# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1sumB 235 2.49e-05 a.7.12.1 106025 1xwmA 217 9.72e-04 1vljA 407 1.71e-01 e.22.1.2 108832 1sd4A 126 3.57e-01 a.4.5.39 105428 1eerA 166 9.25e-01 1eerA a.26.1.2 16846 1n81A 186 1.06e+00 a.185.1.1 85388 1ymtA 246 1.31e+00 1cn4C 166 3.13e+00 1eerA a.26.1.2 16847 1eumA 165 5.28e+00 1eumA a.25.1.1 59507 1e0bA 68 5.38e+00 1e0bA b.34.13.2 37476 2gh1A 301 5.69e+00 1z72A 225 6.46e+00 1buyA 166 6.65e+00 1eerA a.26.1.2 16848 1afrA 345 7.02e+00 1afrA a.25.1.2 16805 1o5hA 214 1.03e+01 a.191.1.1 92497 1ntyA 311 1.12e+01 a.87.1.1,b.55.1.1 103873,103874 1kezA 300 1.15e+01 c.69.1.22 68546 1sedA 117 1.23e+01 a.219.1.1 105449 1qoyA 318 1.23e+01 1qoyA h.4.4.1 45788 1rv3A 483 1.23e+01 c.67.1.4 105101 1sr9A 644 1.23e+01 a.5.7.1,c.1.10.5,d.270.1.1 105960,105961,105962 1vctA 205 1.32e+01 1j1vA 94 1.46e+01 a.4.12.2 83981 1rcwA 231 1.64e+01 a.132.1.4 97299 1z63A 500 1.81e+01 1wwpA 119 1.84e+01 1hw1A 239 1.96e+01 1e2xA a.4.5.6,a.78.1.1 16111,18441 1skoA 143 1.96e+01 d.110.7.1 105676 1l8rA 101 2.15e+01 a.6.1.4 73700 2dh4A 340 2.17e+01 1opjA 293 2.25e+01 d.144.1.7 87230 1oq9A 363 2.28e+01 a.25.1.2 87257 1ithA 141 2.34e+01 1ithA a.1.1.2 15623 1hjp 203 2.45e+01 1hjp a.5.1.1,a.60.2.1,b.40.4.2 16274,17947,25266 1xpjA 126 2.51e+01 1ofcX 304 2.66e+01 a.4.1.3,a.4.1.13,a.187.1.1 92826,92827,92828 1vhnA 318 2.75e+01 c.1.4.1 100693 2abk 211 2.95e+01 2abk a.96.1.1 18743 1qqeA 292 2.96e+01 1qqeA a.118.8.1 19210 1po5A 476 2.97e+01 a.104.1.1 94963 1wu9A 80 3.18e+01 1i25A 37 3.25e+01 1i25A g.3.6.2 44115 1t46A 313 3.62e+01 d.144.1.7 106397 1ihoA 283 3.62e+01 1ihoA c.26.1.4 62390 1bpyA 335 3.65e+01 1bpyA a.60.6.1,a.60.12.1,d.218.1.2 17980,75819,75820 2ahqA 76 3.76e+01 1qbjA 81 3.96e+01 1qbjA a.4.5.19 16155 1cuk 203 4.16e+01 1hjp a.5.1.1,a.60.2.1,b.40.4.2 16273,17946,25265 1ofuX 119 4.26e+01 c.37.1.22 86976 1tzvA 142 4.26e+01 a.79.1.1 107526 1z5bA 469 4.32e+01 1sdsA 117 4.34e+01 d.79.3.1 105439 2b7aA 293 4.42e+01 1dt6A 473 4.54e+01 1dt6A a.104.1.1 18977 1hx1B 114 4.56e+01 1hx1B a.7.7.1 61350 1wu4A 396 4.59e+01 1ppjA 446 4.61e+01 d.185.1.1,d.185.1.1 104252,104253 1on3A 523 4.66e+01 c.14.1.4,c.14.1.4 87107,87108 1tv9A 335 4.73e+01 2dc3A 193 4.75e+01 1eqfA 280 4.79e+01 1eqfA a.29.2.1,a.29.2.1 16972,16973 1of9A 77 4.79e+01 a.64.1.4 92821 1qgpA 77 4.85e+01 1qbjA a.4.5.19 16158 1d3uB 201 4.94e+01 1aisB a.74.1.2,a.74.1.2 18386,18387 1r0vA 305 5.33e+01 c.52.2.1,c.52.2.1,d.75.1.1 96742,96743,96744 1elkA 157 5.37e+01 1dvpA a.118.9.2 19217 1fm4A 159 5.41e+01 1bv1 d.129.3.1 76186 2ayuA 417 5.47e+01 1ze3D 125 5.48e+01 1a7cA 379 5.63e+01 1sek e.1.1.1 42660 2dhqA 146 5.80e+01 2dhqA c.23.13.1 31382 1qa5A 58 5.91e+01 1qa5A j.52.1.1 46335 2fmpA 335 5.93e+01 1qa4A 57 5.97e+01 1qa4A j.52.1.1 46334 1aoy 78 5.98e+01 1aoy a.4.5.3 16087 1b5pA 385 5.99e+01 c.67.1.1 90403 1h6kA 757 6.39e+01 a.118.1.14,a.118.1.14,a.118.1.14 60675,60676,60677 1xbiA 120 6.43e+01 1f32A 149 6.48e+01 1f32A d.62.1.1 39539 1h6oA 204 6.63e+01 a.146.1.1 60689 1b3tA 147 6.65e+01 1b3tA d.58.8.1 39228 1jpxA 84 6.68e+01 h.3.2.1 71783 1ngmB 72 6.81e+01 j.104.1.1 85687 2fq4A 192 6.86e+01 1bw6A 56 6.91e+01 1bw6A a.4.1.7 16052 1n7sA 63 7.06e+01 h.1.15.1 80271 2cw9A 194 7.06e+01 1rfzA 168 7.37e+01 a.195.1.1 97411 2bo9A 308 7.46e+01 2fqmA 75 7.77e+01 1t0iA 191 7.88e+01 c.23.5.4 106209 1gz0A 253 8.15e+01 c.116.1.1,d.79.3.3 76391,76392 1qpcA 279 8.21e+01 1fgkA d.144.1.7 41685 1p4oA 322 8.37e+01 d.144.1.7 87775 1jqhA 308 8.38e+01 d.144.1.7 71793 1j8mF 297 8.52e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 1k47A 337 8.75e+01 d.14.1.5,d.58.26.4 72040,72041 1gqeA 365 8.94e+01 e.38.1.1 70351 1l8qA 324 8.98e+01 a.4.12.2,c.37.1.20 77809,77810