# List of top-scoring protein chains for T0365.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1t72A 227 1.52e-07 1sumB 235 1.94e-07 a.7.12.1 106025 1xwmA 217 1.97e-05 1vctA 205 5.01e-01 2fo7A 136 5.02e+00 1keaA 221 5.09e+00 a.96.1.2 68491 1l4aA 80 5.29e+00 h.1.15.1 73559 1fgkA 310 7.73e+00 1fgkA d.144.1.7 41693 1sfcA 96 8.31e+00 1sfcA h.1.15.1 45643 1vkhA 273 1.28e+01 c.69.1.32 108662 1s4bP 674 1.30e+01 d.92.1.5 105252 1oecA 316 1.54e+01 1hjp 203 2.07e+01 1hjp a.5.1.1,a.60.2.1,b.40.4.2 16274,17947,25266 1sd4A 126 2.21e+01 a.4.5.39 105428 1vljA 407 2.23e+01 e.22.1.2 108832 1bmtA 246 2.24e+01 1bmtA a.46.1.1,c.23.6.1 17757,31235 2eshA 118 2.48e+01 2ct8A 497 2.55e+01 1gvhA 396 2.58e+01 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 1hn0A 1021 2.74e+01 a.102.3.2,b.18.1.17,b.24.1.1,b.30.5.2 83616,83617,83618,83619 1cuk 203 2.94e+01 1hjp a.5.1.1,a.60.2.1,b.40.4.2 16273,17946,25265 1n7sA 63 3.00e+01 h.1.15.1 80271 1kilA 66 3.02e+01 h.1.15.1 72518 1euzA 419 3.24e+01 1k89 c.2.1.7,c.58.1.1 59513,59514 1liaA 164 3.27e+01 1cpcA a.1.1.3 15661 1wkbA 810 3.28e+01 1wz2A 967 3.41e+01 2c07A 285 3.48e+01 1x9dA 538 3.65e+01 2f5xA 312 3.89e+01 1x42A 232 4.12e+01 1j1vA 94 4.28e+01 a.4.12.2 83981 1whcA 64 4.64e+01 1l1lA 739 4.68e+01 c.7.1.4 73470 1ckv 141 4.69e+01 1ckv d.137.1.1 41452 1lpbB 449 4.69e+01 1gpl b.12.1.2,c.69.1.19 23643,34791 2dc3A 193 4.78e+01 1esc 306 5.42e+01 1esc c.23.10.1 31334 1dwaM 499 5.72e+01 1e70M c.1.8.4 28928 1e4mM 501 5.76e+01 1e70M c.1.8.4 59226 1qhoA 686 5.99e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21844,22513,27751,28738 1qi1A 475 6.11e+01 1euhA c.82.1.1 35381 2fvoA 333 6.14e+01 1myr 501 6.22e+01 1e70M c.1.8.4 28925 1rq0A 342 6.23e+01 e.38.1.1 105044 2erbA 125 6.27e+01 1ofcX 304 6.37e+01 a.4.1.3,a.4.1.13,a.187.1.1 92826,92827,92828 2avpA 70 6.46e+01 1ka2A 499 6.49e+01 d.92.1.5 77305 1efuA 385 6.56e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25682,25722,32115 1dg1G 394 6.57e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25684,25724,32117 1d8tA 393 6.57e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25686,25726,32119 1efcA 393 6.57e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25680,25720,32113 1ob2A 393 6.57e+01 b.43.3.1,b.44.1.1,c.37.1.8 103900,103901,103902 1efm 393 6.64e+01 1efcA c.37.1.8 64732 1etu 394 6.82e+01 1efcA c.37.1.8 64737 2f3iA 150 6.90e+01 1kk9A 221 7.02e+01 d.115.1.1 77432 1lh0A 213 7.23e+01 c.61.1.1 73896 2pjrA 548 7.28e+01 1pjr c.37.1.19,c.37.1.19 32395,32396 1k7jA 206 7.35e+01 d.115.1.1 72103 1pjr 724 7.38e+01 1pjr c.37.1.19,c.37.1.19 32391,32392 1e0uA 470 7.39e+01 1a49A b.58.1.1,c.1.12.1,c.49.1.1 27072,29300,33154 1xgkA 352 7.50e+01 1k6xA 352 7.52e+01 c.2.1.2 68238 1gtmA 419 7.60e+01 1hwyA c.2.1.7,c.58.1.1 30223,33871 1sto 213 7.60e+01 1opr c.61.1.1 34092 1urvA 190 7.85e+01 1dkzA 219 7.96e+01 1dkzA a.8.4.1,b.130.1.1 90345,90346 1ktbA 405 7.96e+01 b.71.1.1,c.1.8.1 72960,72961 2cunA 410 7.96e+01 1o6bA 169 7.98e+01 c.26.1.3 92564 2am1A 454 8.04e+01 2cy5A 140 8.29e+01 1na0A 125 8.70e+01 k.38.1.1 85479 1qhhB 273 8.85e+01 1pjr