# List of top-scoring protein chains for t06-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1sumB 235 9.05e-08 a.7.12.1 106025 1xwmA 217 2.26e-07 1vctA 205 9.91e-03 1wkbA 810 4.60e-02 1oq9A 363 2.22e-01 a.25.1.2 87257 1ouvA 273 3.60e-01 a.118.18.1 93570 2dc3A 193 3.64e-01 1urvA 190 3.72e-01 2c6cA 707 5.09e-01 1wphA 201 6.88e-01 1ku1A 230 9.79e-01 a.118.3.1 72996 1j1vA 94 1.01e+00 a.4.12.2 83981 2ah6A 208 1.11e+00 1q5nA 454 1.22e+00 a.127.1.1 95901 1spgA 144 1.38e+00 1abwA a.1.1.2 15409 1w2yA 229 1.41e+00 a.204.1.1 109140 1h3nA 878 1.49e+00 a.27.1.1,b.51.1.1,c.26.1.1 76641,76642,76643 1vls 146 1.85e+00 1vls a.24.2.1 16532 1qsaA 618 2.11e+00 1qsaA a.118.5.1,d.2.1.6 19182,36988 1j1jA 240 2.26e+00 a.118.16.1 90762 2f6hX 419 2.32e+00 2awiA 317 2.60e+00 1mkiA 330 2.71e+00 e.3.1.2 84994 1kgnA 329 2.78e+00 a.25.1.2 68584 1keaA 221 2.82e+00 a.96.1.2 68491 1wleA 501 2.90e+00 1irdA 141 3.11e+00 a.1.1.2 66286 1nm2A 317 3.33e+00 c.19.1.1,d.58.23.1 80654,80655 1x42A 232 3.45e+00 1xqrA 296 4.08e+00 2aplA 157 4.27e+00 1o5hA 214 4.30e+00 a.191.1.1 92497 1fgkA 310 4.36e+00 1fgkA d.144.1.7 41693 2d5xA 141 4.46e+00 2b7aA 293 4.59e+00 1siqA 392 4.87e+00 a.29.3.1,e.6.1.1 105585,105586 1aisB 200 5.00e+00 1aisB a.74.1.2,a.74.1.2 18384,18385 1hw1A 239 5.07e+00 1e2xA a.4.5.6,a.78.1.1 16111,18441 2db0A 253 5.98e+00 1ohuA 175 6.14e+00 f.1.4.1 93029 1wmuB 146 6.19e+00 a.1.1.2 109417 1vj7A 393 6.21e+00 a.211.1.1,d.218.1.8 100801,100802 1i3dA 146 6.29e+00 a.1.1.2 61587 1woyA 500 6.35e+00 1n7sA 63 6.50e+00 h.1.15.1 80271 1n81A 186 6.73e+00 a.185.1.1 85388 1aep 161 7.66e+00 1aep a.63.1.1 18139 1ngnA 155 7.90e+00 a.96.1.2 85697 1cuk 203 7.99e+00 1hjp a.5.1.1,a.60.2.1,b.40.4.2 16273,17946,25265 1xqsA 280 8.25e+00 1x8vA 455 8.42e+00 1k6iA 352 8.82e+00 c.2.1.2 68223 1zs9A 261 9.37e+00 1dxrM 323 9.42e+00 6prcM f.26.1.1 43432 1chuA 540 9.67e+00 1chuA a.7.3.1,c.3.1.4,d.168.1.1 16325,30424,42307 1tffA 234 1.01e+01 d.3.1.11 106854 1twfA 1733 1.05e+01 1elrA 131 1.09e+01 1a17 a.118.8.1 19209 1jsdB 176 1.10e+01 h.3.1.1 63259 1eexG 173 1.12e+01 1dioG a.23.2.1 16490 1pjr 724 1.13e+01 1pjr c.37.1.19,c.37.1.19 32391,32392 1fpzA 212 1.18e+01 1fpzA c.45.1.1 59976 1hs6A 611 1.18e+01 1hs6A a.118.1.7,b.98.1.1,d.92.1.13 61233,61234,61235 1xgkA 352 1.29e+01 2aaxA 275 1.33e+01 1w9cA 321 1.35e+01 2btdA 210 1.36e+01 1paqA 189 1.38e+01 a.118.1.14 94413 1sgmA 191 1.43e+01 a.4.1.9,a.121.1.1 105537,105538 1p3qQ 54 1.44e+01 a.5.2.4 87748 1fcyA 236 1.47e+01 2lbd a.123.1.1 19282 1ir6A 424 1.51e+01 c.107.1.2 71342 1orjA 130 1.53e+01 a.24.19.1 93456 1xk4A 93 1.54e+01 2fji1 399 1.55e+01 2fmpA 335 1.55e+01 2fq4A 192 1.60e+01 2fbnA 198 1.63e+01 2fnoA 248 1.63e+01 1bupA 386 1.65e+01 1ba1 c.55.1.1,c.55.1.1 33377,33378 1xv5A 401 1.70e+01 1gmjA 84 1.70e+01 h.4.8.1 65310 1mgtA 174 1.71e+01 1mgtA a.4.2.1,c.55.7.1 16078,33753 1hbnA 549 1.74e+01 1mroA a.89.1.1,d.58.31.2 60898,60899 1h3lA 87 1.76e+01 a.177.1.1 76639 1x0vA 354 1.80e+01 2fpqA 444 1.84e+01 1np3A 338 1.89e+01 a.100.1.2,c.2.1.6 85946,85947 1mxrA 375 1.94e+01 a.25.1.2 85197 1oaoA 674 1.98e+01 e.26.1.2 86744 2cj4A 150 2.00e+01 1na3A 91 2.07e+01 k.38.1.1 85481 1yozA 116 2.07e+01 1g8iA 190 2.07e+01 1rec a.39.1.5 60363 1wwpA 119 2.10e+01 1wy0A 342 2.11e+01 1wy6A 172 2.14e+01 1lf6A 684 2.15e+01 a.102.1.5,b.30.5.5 77918,77919 2abk 211 2.19e+01 2abk a.96.1.1 18743 1wlmA 151 2.19e+01 1d2tA 231 2.20e+01 1d2tA a.111.1.1 19052 1qbzA 123 2.21e+01 1qbzA h.3.2.1 45729 1rxwA 336 2.22e+01 a.60.7.1,c.120.1.2 98059,98060 1h16A 759 2.23e+01 c.7.1.1 76462 1bif 469 2.25e+01 1bif c.37.1.7,c.60.1.4 31961,34003 2fcjA 119 2.27e+01 1txuA 273 2.28e+01 a.222.1.1 107439 2ch7A 309 2.31e+01 2ahmE 203 2.33e+01 1zbpA 273 2.35e+01 2btoA 473 2.37e+01 1qusA 322 2.40e+01 1ltm d.2.1.6 36991 1jdhA 529 2.43e+01 a.118.1.1 66549 1cnt1 187 2.45e+01 1cnt3 2be3A 226 2.64e+01 1ppjA 446 2.64e+01 d.185.1.1,d.185.1.1 104252,104253 2g8lA 299 2.64e+01 1dowA 205 2.68e+01 1dovA a.24.9.1 16626 1vhnA 318 2.68e+01 c.1.4.1 100693 1aoy 78 2.71e+01 1aoy a.4.5.3 16087 2a2fX 325 2.80e+01 1vkmA 297 2.87e+01 c.138.1.1 108670 1eexA 554 2.89e+01 1dioA c.1.19.3 29650 1gnlA 544 2.90e+01 e.26.1.1 70287 1q0gA 117 2.90e+01 a.24.22.1 104428 1v4xB 146 2.94e+01 a.1.1.2 108364 1irdB 146 2.95e+01 a.1.1.2 66287 2e2aA 105 2.95e+01 a.7.2.1 88499 2gsvA 80 2.95e+01 1nf3A 195 2.99e+01 c.37.1.8 85594 1fzcA 87 3.01e+01 1fzcA h.1.8.1 45590 2cfuA 658 3.03e+01 1s4bP 674 3.03e+01 d.92.1.5 105252 1n4kA 381 3.06e+01 a.118.22.1,b.42.6.1 79992,79993 1x9iA 302 3.07e+01 1nkd 65 3.21e+01 1nkd a.30.1.1 16974 1ofcX 304 3.24e+01 a.4.1.3,a.4.1.13,a.187.1.1 92826,92827,92828 1vljA 407 3.27e+01 e.22.1.2 108832 1nekC 129 3.29e+01 f.21.2.2 80431 1nznA 126 3.34e+01 a.118.8.1 92382 2g0dA 409 3.37e+01 2f31A 233 3.38e+01 1nt2B 258 3.42e+01 a.183.1.1 86150 2fm9A 215 3.42e+01 1vp7A 100 3.45e+01 1gtmA 419 3.52e+01 1hwyA c.2.1.7,c.58.1.1 30223,33871 1v54J 59 3.53e+01 f.23.4.1 100331 7odcA 424 3.66e+01 7odcA b.49.2.3,c.1.6.1 26488,28650 1v4xA 144 3.68e+01 a.1.1.2 108363 1m7kA 99 3.69e+01 a.7.7.1 74573 1qkmA 255 3.71e+01 3erdA a.123.1.1 19309 1utg 70 3.78e+01 1utg a.101.1.1 18813 1x1tA 260 3.83e+01 1tqgA 105 3.85e+01 a.24.10.3 107224 1in6A 334 3.92e+01 1hqcA a.4.5.11,c.37.1.20 62601,62602 2f6mB 109 4.00e+01 1gc0A 398 4.00e+01 c.67.1.3 70168 2d5xB 146 4.01e+01 1khyA 148 4.04e+01 a.174.1.1 77410 2ftuA 118 4.05e+01 1x1iA 752 4.05e+01 1s0pA 176 4.07e+01 a.192.1.1 98300 1h5uA 842 4.08e+01 1a8i c.87.1.4 60655 2gtsA 86 4.09e+01 1ywnA 316 4.09e+01 1agjA 242 4.10e+01 1agjA b.47.1.1 25827 1a9xA 1058 4.12e+01 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18550,31479,31657,31658,41502,41503 2bb6A 414 4.15e+01 1h99A 224 4.16e+01 a.142.1.1,a.142.1.1 60814,60815 1n97A 389 4.23e+01 a.104.1.1 80335 1r9kA 172 4.25e+01 a.168.1.1 104869 2gokA 429 4.26e+01 1fs7A 485 4.26e+01 1qdbA a.138.1.3 19691 1cs0A 1073 4.31e+01 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18558,31487,31673,31674,41518,41519 2f1kA 279 4.32e+01 2gwdA 449 4.36e+01 1wixA 164 4.37e+01 1dk8A 147 4.41e+01 1agrE a.91.1.1 18548 1eumA 165 4.44e+01 1eumA a.25.1.1 59507 1sd4A 126 4.47e+01 a.4.5.39 105428 1vdkA 466 4.55e+01 a.127.1.1 100561 1l0lK 56 4.56e+01 f.23.15.1 84497 2ayuA 417 4.57e+01 2f23A 156 4.62e+01 2gtrA 261 4.67e+01 1mtyD 512 4.68e+01 1mhyD a.25.1.2 16742 1u7gA 385 4.71e+01 f.44.1.1 107723 1v54A 514 4.74e+01 f.24.1.1 100321 1azsA 220 4.80e+01 1azsA d.58.29.1 39416 1wy5A 317 4.81e+01 1z72A 225 4.85e+01 1r8mE 203 4.87e+01 a.118.3.1 97242 1qkrA 188 4.87e+01 1qkrA a.24.9.1 16628 1ohfA 644 4.90e+01 b.121.4.8 93014 1k3yA 221 5.06e+01 a.45.1.1,c.47.1.5 77245,77246 2amdA 311 5.07e+01 1ajsA 412 5.26e+01 1ajsA c.67.1.1 34276 1u7kA 131 5.26e+01 1ka2A 499 5.32e+01 d.92.1.5 77305 1huw 166 5.36e+01 1huw a.26.1.1 16831 1rzhL 281 5.37e+01 f.26.1.1 98164 1jr8A 117 5.37e+01 a.24.15.1 67115 1nvmA 345 5.44e+01 a.5.7.1,c.1.10.5 86249,86250 2c2nA 339 5.44e+01 1ash 150 5.49e+01 1ash a.1.1.2 15622 2bh7A 261 5.60e+01 2g40A 224 5.62e+01 1tq4A 413 5.65e+01 c.37.1.8 107201 1v9yA 167 5.73e+01 d.110.3.2 108454 1ykhB 132 5.79e+01 2bs3C 256 5.84e+01 1o5kA 306 5.86e+01 c.1.10.1 92504 1wqgA 185 5.89e+01 1khoA 370 5.90e+01 a.124.1.1,b.12.1.3 72489,72490 2aa1B 146 5.97e+01 2f6mA 65 6.01e+01 1oz9A 150 6.07e+01 d.92.1.15 93808 1za0A 275 6.10e+01 1wrdA 103 6.20e+01 1m0kA 262 6.23e+01 f.13.1.1 78344 1kqqA 139 6.24e+01 a.4.3.1 72885 1xf1A 926 6.24e+01 1zu0A 529 6.27e+01 1yarO 237 6.28e+01 1po5A 476 6.30e+01 a.104.1.1 94963 2ck3A 510 6.35e+01 1ho8A 480 6.41e+01 1ho8A a.118.1.9 61107 1wcrA 103 6.41e+01 1lshA 1056 6.41e+01 a.118.4.1,f.7.1.1,f.7.1.1 74242,74243,74244 2c12A 439 6.44e+01 1o9iA 266 6.45e+01 a.25.1.3 92671 1vgmA 378 6.57e+01 2cwcA 303 6.57e+01 1xmeA 568 6.67e+01 1sflA 238 6.74e+01 2bk9A 153 6.78e+01 1n2aA 201 6.87e+01 a.45.1.1,c.47.1.5 91553,91554 2ez6A 221 6.89e+01 2gnoA 305 6.90e+01 1q0uA 219 6.95e+01 c.37.1.19 95512 1qxoA 388 7.00e+01 d.258.1.1 96539 2oatA 439 7.08e+01 2dkb c.67.1.4 34452 1jdpA 441 7.09e+01 c.93.1.1 62906 1klxA 138 7.12e+01 a.118.18.1 77440 1h6gA 256 7.17e+01 1h6gA a.24.9.1,a.24.9.1 60669,60670 2eulA 156 7.27e+01 1gntA 553 7.28e+01 e.26.1.1 70290 1twfB 1224 7.28e+01 1q9uA 130 7.29e+01 d.129.7.1 96314 1yakA 263 7.30e+01 1t46A 313 7.31e+01 d.144.1.7 106397 2fefA 294 7.40e+01 1r8sE 203 7.48e+01 a.118.3.1 97248 1ffyA 917 7.53e+01 1qu2A a.27.1.1,b.51.1.1,c.26.1.1 16926,26891,31593 2gf4A 100 7.57e+01 1wdtA 665 7.58e+01 1q77A 138 7.59e+01 c.26.2.4 96023 1oe8A 211 7.61e+01 a.45.1.1,c.47.1.5 86905,86906 2g38A 99 7.64e+01 1q0rA 298 7.71e+01 c.69.1.28 95508 1tazA 365 7.73e+01 a.211.1.2 106734 2a11A 242 7.75e+01 2c8vA 288 7.90e+01 1kicA 339 7.97e+01 c.70.1.1 72510 1jhgA 101 8.00e+01 1jhgA a.4.12.1 19009 1v66A 65 8.01e+01 2fk8A 318 8.02e+01 1f1mA 164 8.03e+01 1ggqA a.24.12.1 59598 2bptA 861 8.05e+01 1s7zA 117 8.06e+01 a.159.3.1 98715 1aq5A 47 8.10e+01 1aq5A h.1.6.1 45577 1tu9A 134 8.12e+01 a.1.1.2 107320 1vjlA 164 8.14e+01 d.257.1.1 100822 1ylmA 144 8.27e+01 1p9bA 442 8.30e+01 c.37.1.10 94385 1z0kB 69 8.34e+01 1t33A 224 8.37e+01 a.4.1.9,a.121.1.1 106295,106296 1in4A 334 8.38e+01 1hqcA a.4.5.11,c.37.1.20 62597,62598 1uq5A 263 8.46e+01 d.165.1.1 99778 1y2mA 716 8.56e+01 1yzxA 226 8.58e+01 1f5vA 240 8.60e+01 1bkjA d.90.1.1 40255 1gk9A 260 8.66e+01 d.153.1.2 65246 1hl9A 449 8.70e+01 b.71.1.3,c.1.8.11 90650,90651 1zhcA 76 8.76e+01 1hz4A 373 8.88e+01 a.118.8.2 65960 1w6sB 74 8.90e+01 1mp8A 281 8.98e+01 d.144.1.7 91384