# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1sumB 235 8.29e-11 a.7.12.1 106025 1xwmA 217 1.49e-08 1vctA 205 1.78e-03 1hw1A 239 4.55e-01 1e2xA a.4.5.6,a.78.1.1 16111,18441 1o5hA 214 6.15e-01 a.191.1.1 92497 1i5nA 146 8.25e-01 1i5nA a.24.10.3 61805 1j1vA 94 8.96e-01 a.4.12.2 83981 1tqgA 105 1.39e+00 a.24.10.3 107224 1sd4A 126 1.80e+00 a.4.5.39 105428 1oq9A 363 1.81e+00 a.25.1.2 87257 1txuA 273 1.82e+00 a.222.1.1 107439 1vljA 407 1.83e+00 e.22.1.2 108832 1qkrA 188 1.91e+00 1qkrA a.24.9.1 16628 1ofcX 304 2.22e+00 a.4.1.3,a.4.1.13,a.187.1.1 92826,92827,92828 2fupA 168 2.55e+00 1x9mA 698 2.63e+00 1wcrA 103 2.70e+00 1ir6A 424 2.75e+00 c.107.1.2 71342 1s4bP 674 2.79e+00 d.92.1.5 105252 2g0dA 409 3.63e+00 2aeuA 374 3.82e+00 1n81A 186 3.93e+00 a.185.1.1 85388 1fgkA 310 4.05e+00 1fgkA d.144.1.7 41693 2dbnA 461 4.24e+00 1wixA 164 4.41e+00 1hx1B 114 4.48e+00 1hx1B a.7.7.1 61350 1o5kA 306 4.90e+00 c.1.10.1 92504 2etdA 171 5.50e+00 1na3A 91 5.69e+00 k.38.1.1 85481 2a3nA 355 5.99e+00 1uujA 88 6.29e+00 a.221.1.1 108046 1ajsA 412 7.32e+00 1ajsA c.67.1.1 34276 1x42A 232 7.67e+00 1h5uA 842 7.73e+00 1a8i c.87.1.4 60655 1in6A 334 7.88e+00 1hqcA a.4.5.11,c.37.1.20 62601,62602 1ymtA 246 8.06e+00 1bbhA 131 8.56e+00 1bbhA a.24.3.2 16546 1bf5A 545 8.57e+00 1bg1A a.47.1.1,b.2.5.5,d.93.1.1 17766,22460,40526 1sr9A 644 9.32e+00 a.5.7.1,c.1.10.5,d.270.1.1 105960,105961,105962 1chuA 540 9.38e+00 1chuA a.7.3.1,c.3.1.4,d.168.1.1 16325,30424,42307 2b3hA 329 9.45e+00 1u4qA 322 9.75e+00 1wcgA 464 1.05e+01 1vgmA 378 1.09e+01 1cpt 412 1.15e+01 1cpt a.104.1.1 18968 1q0gA 117 1.16e+01 a.24.22.1 104428 1in4A 334 1.20e+01 1hqcA a.4.5.11,c.37.1.20 62597,62598 1p4oA 322 1.22e+01 d.144.1.7 87775 1vykA 149 1.29e+01 1n7sA 63 1.29e+01 h.1.15.1 80271 1u5pA 216 1.33e+01 1cuk 203 1.35e+01 1hjp a.5.1.1,a.60.2.1,b.40.4.2 16273,17946,25265 1l7mA 211 1.39e+01 c.108.1.4 73664 1vk3A 615 1.41e+01 d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 100846,100847,100848,100849 1q59A 172 1.43e+01 f.1.4.1 95881 1h3lA 87 1.47e+01 a.177.1.1 76639 1xv5A 401 1.48e+01 1eerA 166 1.48e+01 1eerA a.26.1.2 16846 2fpqA 444 1.54e+01 1l8rA 101 1.57e+01 a.6.1.4 73700 2dbgA 103 1.59e+01 2ftuA 118 1.62e+01 2bk9A 153 1.63e+01 1paqA 189 1.74e+01 a.118.1.14 94413 1urvA 190 1.77e+01 1vj7A 393 1.78e+01 a.211.1.1,d.218.1.8 100801,100802 1dc1A 323 1.78e+01 1dc1A c.52.1.11 33321 1wkbA 810 1.84e+01 2fji1 399 1.85e+01 1f1mA 164 1.87e+01 1ggqA a.24.12.1 59598 1b9hA 388 1.93e+01 1b9hA c.67.1.4 34488 1wrdA 103 1.95e+01 1uw4B 248 1.95e+01 a.118.1.14 100072 1qbzA 123 2.00e+01 1qbzA h.3.2.1 45729 1qpcA 279 2.05e+01 1fgkA d.144.1.7 41685 1ngnA 155 2.08e+01 a.96.1.2 85697 1wleA 501 2.08e+01 1cunA 213 2.09e+01 1cunA a.7.1.1,a.7.1.1 16313,16314 1aoy 78 2.10e+01 1aoy a.4.5.3 16087 1pszA 303 2.11e+01 1toaA c.92.2.2 35600 1hl2A 297 2.23e+01 c.1.10.1 83581 1rl4A 188 2.24e+01 d.167.1.1 97636 1txdA 385 2.30e+01 a.87.1.1,b.55.1.1 107422,107423 1z8uA 102 2.32e+01 1yrcA 414 2.35e+01 1yzmA 51 2.36e+01 1gntA 553 2.38e+01 e.26.1.1 70290 1elrA 131 2.52e+01 1a17 a.118.8.1 19209 1azsA 220 2.53e+01 1azsA d.58.29.1 39416 1y8aA 332 2.61e+01 2f6mB 109 2.61e+01 1ihoA 283 2.65e+01 1ihoA c.26.1.4 62390 1vkeA 133 2.68e+01 a.152.1.2 108650 2oatA 439 2.70e+01 2dkb c.67.1.4 34452 1p3qQ 54 2.72e+01 a.5.2.4 87748 1t9iA 163 2.76e+01 1t6uA 117 2.78e+01 a.24.22.1 106584 1dofA 403 2.80e+01 1c3cA a.127.1.1 19429 2fmpA 335 2.85e+01 1zxaA 67 2.87e+01 1q5dA 419 2.89e+01 a.104.1.1 95891 1ev7A 317 2.91e+01 1ev7B c.52.1.9 33315 1usmA 80 2.94e+01 d.74.1.1 99876 2g09A 297 2.99e+01 1t3wA 148 2.99e+01 1m7kA 99 3.04e+01 a.7.7.1 74573 1jadA 251 3.05e+01 h.4.10.1 66461 1cpq 129 3.05e+01 1cpq a.24.3.2 16556 1g6uA 48 3.07e+01 1g6uA k.9.1.1 46425 1mkiA 330 3.07e+01 e.3.1.2 84994 1wqgA 185 3.10e+01 1ka2A 499 3.11e+01 d.92.1.5 77305 1ep3A 311 3.11e+01 2dorA c.1.4.1 28597 2g50A 530 3.13e+01 1zkrA 153 3.19e+01 1ntyA 311 3.19e+01 a.87.1.1,b.55.1.1 103873,103874 1vls 146 3.21e+01 1vls a.24.2.1 16532 1eu8A 409 3.25e+01 1eu8A c.94.1.1 59502 2b8iA 77 3.25e+01 1z72A 225 3.26e+01 1opjA 293 3.40e+01 d.144.1.7 87230 1rcwA 231 3.45e+01 a.132.1.4 97299 2azeB 106 3.46e+01 1e4mM 501 3.47e+01 1e70M c.1.8.4 59226 1upkA 341 3.53e+01 a.118.1.15 99758 1h6gA 256 3.64e+01 1h6gA a.24.9.1,a.24.9.1 60669,60670 1ytlA 174 3.70e+01 1quuA 250 3.74e+01 1quuA a.7.1.1,a.7.1.1 16320,16321 1zbpA 273 3.74e+01 1bw0A 416 3.77e+01 1bw0A c.67.1.1 34385 1xdpA 687 3.88e+01 2d8dA 90 3.90e+01 1fcyA 236 3.92e+01 2lbd a.123.1.1 19282 7odcA 424 3.97e+01 7odcA b.49.2.3,c.1.6.1 26488,28650 1yzsA 121 4.02e+01 2bl8A 103 4.09e+01 1ppjA 446 4.12e+01 d.185.1.1,d.185.1.1 104252,104253 2btoA 473 4.14e+01 1s0pA 176 4.28e+01 a.192.1.1 98300 1tzvA 142 4.43e+01 a.79.1.1 107526 1ta8A 332 4.44e+01 1o60A 292 4.54e+01 c.1.10.4 92532 2f6hX 419 4.57e+01 1k47A 337 4.58e+01 d.14.1.5,d.58.26.4 72040,72041 1gh9A 71 4.58e+01 1gh9A g.41.6.1 45266 1elkA 157 4.61e+01 1dvpA a.118.9.2 19217 1u59A 287 4.68e+01 d.144.1.7 107681 2a33A 215 4.71e+01 1yrbA 262 4.78e+01 1b4pA 217 4.82e+01 a.45.1.1,c.47.1.5 83158,83159 3sdhA 146 4.85e+01 3sdhA a.1.1.2 14984 1x9iA 302 4.89e+01 1xk4A 93 4.91e+01 1xw3A 110 4.97e+01 1x2iA 75 4.98e+01 1umnA 165 4.99e+01 a.25.1.1 99607 1eumA 165 5.03e+01 1eumA a.25.1.1 59507 1gqeA 365 5.03e+01 e.38.1.1 70351 2av4A 162 5.03e+01 2c2qA 199 5.03e+01 1o65A 246 5.05e+01 b.58.1.2 92544 1p42A 270 5.08e+01 d.14.1.7,d.14.1.7 87754,87755 1agjA 242 5.08e+01 1agjA b.47.1.1 25827 1f32A 149 5.09e+01 1f32A d.62.1.1 39539 1u00A 227 5.15e+01 1js8A 394 5.21e+01 a.86.1.1,b.112.1.1 67219,67220 1cs0A 1073 5.22e+01 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18558,31487,31673,31674,41518,41519 1ta9A 450 5.27e+01 1odoA 408 5.28e+01 a.104.1.1 92783 1lxjA 104 5.31e+01 d.58.48.1 84736 1vf6A 83 5.31e+01 a.194.1.1 100600 2g2dA 193 5.36e+01 1n1bA 549 5.36e+01 a.102.4.1,a.128.1.3 79799,79800 1opc 110 5.36e+01 1opc a.4.6.1 16231 1gakA 141 5.38e+01 1gakA a.19.1.1 16415 1w1oA 534 5.47e+01 d.58.32.4,d.145.1.1 109071,109072 1o9iA 266 5.49e+01 a.25.1.3 92671 1rtwA 220 5.54e+01 a.132.1.3 97823 1xuvA 178 5.60e+01 1elwA 118 5.63e+01 1a17 a.118.8.1 19207 1obbA 480 5.65e+01 c.2.1.5,d.162.1.2 86760,86761 2d5xB 146 5.71e+01 1wmuB 146 5.78e+01 a.1.1.2 109417 1q8cA 151 5.81e+01 a.79.1.2 96202 1wchA 315 5.85e+01 2fnoA 248 5.89e+01 2cdqA 510 5.91e+01 1z0kB 69 5.91e+01 2cy7A 396 6.08e+01 1lhpA 312 6.17e+01 c.72.1.5 77960 2fzsA 193 6.20e+01 1xsvA 113 6.32e+01 1pcfA 66 6.33e+01 1pcfA d.18.1.1 38142 1g24A 211 6.33e+01 1g24A d.166.1.1 42270 1yg6A 193 6.34e+01 2cj4A 150 6.36e+01 1peh 35 6.36e+01 1peh j.14.1.1 46151 1t98A 287 6.37e+01 1vp4A 425 6.39e+01 1xezA 721 6.39e+01 1r8sE 203 6.57e+01 a.118.3.1 97248 2gsfA 373 6.59e+01 1puoA 170 6.64e+01 a.101.1.1,a.101.1.1 95134,95135 2feaA 236 6.74e+01 1sflA 238 6.77e+01 2cw9A 194 6.78e+01 1j31A 262 6.78e+01 d.160.1.2 90808 1uj8A 77 6.83e+01 1o26A 232 6.86e+01 d.207.1.1 86566 1g73A 162 6.88e+01 1fewA a.7.4.1 16332 1keaA 221 6.96e+01 a.96.1.2 68491 1fqiA 147 7.01e+01 1agrE a.91.1.1 18542 2c5kT 95 7.01e+01 2cbuA 468 7.05e+01 1aep 161 7.05e+01 1aep a.63.1.1 18139 1tv8A 340 7.10e+01 c.1.28.3 107352 1qw9A 502 7.19e+01 b.71.1.2,c.1.8.3 96466,96467 1yspA 181 7.21e+01 1wy6A 172 7.21e+01 1c9kA 180 7.22e+01 1c9kB c.37.1.11 32363 1jpaA 312 7.22e+01 d.144.1.7 67011 2pth 193 7.23e+01 2pth c.56.3.1 33793 1xkyA 301 7.25e+01 1j5wA 298 7.25e+01 d.104.1.1 71589 1t6fA 37 7.26e+01 h.1.28.1 106565 1jekB 36 7.30e+01 1jekB 1em8B 112 7.33e+01 c.126.1.1 90458 2hmzA 113 7.34e+01 2mhr a.24.4.1 16564 1sazA 381 7.65e+01 1e0tA 470 7.66e+01 1a49A b.58.1.1,c.1.12.1,c.49.1.1 27064,29292,33146 1c3mA 147 7.68e+01 1jotA b.77.3.1 27983 1g6aA 271 7.69e+01 1btl e.3.1.1 42704 1je5A 206 7.75e+01 1je5A b.40.4.7 62909 2gyqA 175 7.81e+01 2dc3A 193 7.83e+01 1v4xB 146 7.85e+01 a.1.1.2 108364 1j2jB 45 7.87e+01 a.7.8.1 84017 1t6t1 118 8.01e+01 2etsA 128 8.19e+01 1wc3A 219 8.32e+01 1u94A 356 8.34e+01 c.37.1.11,d.48.1.1 107743,107744 2gjsA 176 8.34e+01 1odkA 235 8.36e+01 c.56.2.1 86863 2fe7A 166 8.42e+01 1f5nA 592 8.52e+01 1dg3A a.114.1.1,c.37.1.8 19077,32152 1uslA 170 8.63e+01 c.121.1.1 99871 1hgxA 183 8.77e+01 1tc1A c.61.1.1 34027 1jihA 531 8.80e+01 d.240.1.1,e.8.1.7 90374,90375 2f9dP 43 8.91e+01 1w6sB 74 8.93e+01 2gwdA 449 8.94e+01 2spcA 107 8.95e+01 2spcA a.7.1.1 16311 1wwpA 119 8.96e+01 1bg6 359 8.99e+01 1bg6 a.100.1.5,c.2.1.6 18810,30214