# List of top-scoring protein chains for t04-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1sumB 235 1.23e-08 a.7.12.1 106025 1xwmA 217 2.06e-05 1vctA 205 6.12e-03 1hw1A 239 1.83e-01 1e2xA a.4.5.6,a.78.1.1 16111,18441 1o5hA 214 2.12e-01 a.191.1.1 92497 1i5nA 146 6.45e-01 1i5nA a.24.10.3 61805 1tqgA 105 8.08e-01 a.24.10.3 107224 1wcrA 103 8.55e-01 1j1vA 94 9.50e-01 a.4.12.2 83981 1oq9A 363 9.84e-01 a.25.1.2 87257 1afrA 345 1.44e+00 1afrA a.25.1.2 16805 1vljA 407 1.50e+00 e.22.1.2 108832 1qkrA 188 2.17e+00 1qkrA a.24.9.1 16628 2fupA 168 2.22e+00 1hx1B 114 2.84e+00 1hx1B a.7.7.1 61350 1o5kA 306 4.48e+00 c.1.10.1 92504 1bmtA 246 5.01e+00 1bmtA a.46.1.1,c.23.6.1 17757,31235 1n81A 186 5.34e+00 a.185.1.1 85388 1u5pA 216 5.34e+00 1ajsA 412 5.64e+00 1ajsA c.67.1.1 34276 1sd4A 126 5.76e+00 a.4.5.39 105428 2a3nA 355 6.23e+00 1ir6A 424 6.49e+00 c.107.1.2 71342 2avpA 70 7.25e+00 1h5uA 842 7.49e+00 1a8i c.87.1.4 60655 1ofcX 304 7.56e+00 a.4.1.3,a.4.1.13,a.187.1.1 92826,92827,92828 1wrdA 103 7.67e+00 1vykA 149 7.70e+00 2etdA 171 8.15e+00 1cpt 412 8.22e+00 1cpt a.104.1.1 18968 1h6gA 256 9.23e+00 1h6gA a.24.9.1,a.24.9.1 60669,60670 1chuA 540 9.71e+00 1chuA a.7.3.1,c.3.1.4,d.168.1.1 16325,30424,42307 1s4bP 674 1.02e+01 d.92.1.5 105252 1fgkA 310 1.10e+01 1fgkA d.144.1.7 41693 1u4qA 322 1.12e+01 1t7pA 698 1.15e+01 1t7pA c.55.3.5,e.8.1.1 33712,43005 1qmqA 414 1.23e+01 1phd a.104.1.1 18907 1eerA 166 1.24e+01 1eerA a.26.1.2 16846 2bduA 297 1.24e+01 1b9hA 388 1.28e+01 1b9hA c.67.1.4 34488 2b3hA 329 1.29e+01 2pth 193 1.29e+01 2pth c.56.3.1 33793 1ithA 141 1.31e+01 1ithA a.1.1.2 15623 1g9zA 152 1.38e+01 1bp7A d.95.2.1 60408 1x9mA 698 1.43e+01 1na3A 91 1.43e+01 k.38.1.1 85481 1wqgA 185 1.44e+01 1ir3A 306 1.49e+01 1fmk d.144.1.7 41702 1wixA 164 1.57e+01 2ftuA 118 1.57e+01 1bbhA 131 1.64e+01 1bbhA a.24.3.2 16546 1ev7A 317 1.66e+01 1ev7B c.52.1.9 33315 1txuA 273 1.67e+01 a.222.1.1 107439 1qqeA 292 1.76e+01 1qqeA a.118.8.1 19210 2dbnA 461 1.77e+01 1xv5A 401 1.86e+01 1u00A 227 1.91e+01 1n7sA 63 1.92e+01 h.1.15.1 80271 1uw4B 248 1.96e+01 a.118.1.14 100072 1i1iP 681 1.96e+01 1i1iP d.92.1.5 40297 1x42A 232 2.02e+01 1a8i 842 2.14e+01 1a8i c.87.1.4 35490 1p4oA 322 2.18e+01 d.144.1.7 87775 1dofA 403 2.18e+01 1c3cA a.127.1.1 19429 1vkeA 133 2.19e+01 a.152.1.2 108650 2bk9A 153 2.20e+01 1hl2A 297 2.33e+01 c.1.10.1 83581 1vls 146 2.38e+01 1vls a.24.2.1 16532 1azsA 220 2.45e+01 1azsA d.58.29.1 39416 1wleA 501 2.47e+01 1bw0A 416 2.48e+01 1bw0A c.67.1.1 34385 1hr6B 443 2.48e+01 1be3A d.185.1.1,d.185.1.1 61166,61167 1vgmA 378 2.48e+01 2dbgA 103 2.49e+01 1y8aA 332 2.53e+01 2g0dA 409 2.54e+01 1z7mA 344 2.59e+01 1korA 400 2.59e+01 c.26.2.1,d.210.1.1 72824,72825 1qpcA 279 2.59e+01 1fgkA d.144.1.7 41685 1s0pA 176 2.60e+01 a.192.1.1 98300 1usmA 80 2.65e+01 d.74.1.1 99876 1re9A 414 2.75e+01 1urvA 190 2.76e+01 1ut0A 190 2.76e+01 a.1.1.2 108012 2fpqA 444 2.78e+01 1f1mA 164 2.78e+01 1ggqA a.24.12.1 59598 1uujA 88 2.80e+01 a.221.1.1 108046 1ytlA 174 2.80e+01 1q0gA 117 2.84e+01 a.24.22.1 104428 1sig 339 2.90e+01 1sig a.177.1.1 19068 1q59A 172 3.07e+01 f.1.4.1 95881 1umnA 165 3.10e+01 a.25.1.1 99607 1dc1A 323 3.11e+01 1dc1A c.52.1.11 33321 1wkbA 810 3.14e+01 1zgmA 248 3.17e+01 1ymtA 246 3.23e+01 1wcgA 464 3.24e+01 1w1oA 534 3.40e+01 d.58.32.4,d.145.1.1 109071,109072 1ntyA 311 3.55e+01 a.87.1.1,b.55.1.1 103873,103874 1f32A 149 3.57e+01 1f32A d.62.1.1 39539 1pszA 303 3.61e+01 1toaA c.92.2.2 35600 1sr9A 644 3.63e+01 a.5.7.1,c.1.10.5,d.270.1.1 105960,105961,105962 1yrcA 414 3.64e+01 1c4xA 285 3.71e+01 1c4xA c.69.1.10 34684 2byjA 439 3.73e+01 2f6mB 109 3.75e+01 1cunA 213 3.76e+01 1cunA a.7.1.1,a.7.1.1 16313,16314 1jadA 251 3.82e+01 h.4.10.1 66461 2d5xB 146 3.88e+01 1e4mM 501 4.00e+01 1e70M c.1.8.4 59226 1t9iA 163 4.01e+01 1ij2A 34 4.02e+01 h.1.3.1 62474 1yzmA 51 4.05e+01 1o60A 292 4.12e+01 c.1.10.4 92532 1tzvA 142 4.14e+01 a.79.1.1 107526 1tv8A 340 4.18e+01 c.1.28.3 107352 1cpq 129 4.32e+01 1cpq a.24.3.2 16556 1iwhB 146 4.41e+01 a.1.1.2 76883 1gh9A 71 4.55e+01 1gh9A g.41.6.1 45266 1o9iA 266 4.61e+01 a.25.1.3 92671 1l8rA 101 4.64e+01 a.6.1.4 73700 1elrA 131 4.67e+01 1a17 a.118.8.1 19209 2fnoA 248 4.72e+01 1ep3A 311 4.76e+01 2dorA c.1.4.1 28597 1jkvA 266 4.77e+01 a.25.1.3 71719 2cy7A 396 4.85e+01 2g8lA 299 4.87e+01 1zkrA 153 4.97e+01 2azeB 106 4.98e+01 7odcA 424 4.99e+01 7odcA b.49.2.3,c.1.6.1 26488,28650 1bg6 359 5.04e+01 1bg6 a.100.1.5,c.2.1.6 18810,30214 1orjA 130 5.07e+01 a.24.19.1 93456 1vmeA 410 5.10e+01 c.23.5.1,d.157.1.3 108893,108894 2kfnA 605 5.11e+01 1xwl c.55.3.5,e.8.1.1 33682,42975 2c2qA 199 5.13e+01 2bylA 439 5.21e+01 2hmzA 113 5.22e+01 2mhr a.24.4.1 16564 1yrbA 262 5.26e+01 1io1A 398 5.30e+01 1io1A e.32.1.1 62611 1nzeA 149 5.35e+01 a.24.18.1 92374 1cuk 203 5.36e+01 1hjp a.5.1.1,a.60.2.1,b.40.4.2 16273,17946,25265 2aeuA 374 5.40e+01 1m7kA 99 5.46e+01 a.7.7.1 74573 1peh 35 5.48e+01 1peh j.14.1.1 46151 2c2pA 199 5.49e+01 1q5dA 419 5.53e+01 a.104.1.1 95891 1mq4A 272 5.63e+01 d.144.1.7 91391 1gntA 553 5.65e+01 e.26.1.1 70290 1zbpA 273 5.72e+01 1eu8A 409 5.77e+01 1eu8A c.94.1.1 59502 3sdhA 146 5.83e+01 3sdhA a.1.1.2 14984 1xkyA 301 5.84e+01 1eupA 403 5.88e+01 1rom a.104.1.1 18967 2fu2A 102 5.88e+01 1je5A 206 6.00e+01 1je5A b.40.4.7 62909 1gdeA 389 6.01e+01 c.67.1.1 60456 1g6uA 48 6.07e+01 1g6uA k.9.1.1 46425 1dugA 234 6.09e+01 1b8xA a.45.1.1,c.47.1.5 17718,33012 2f9dP 43 6.21e+01 1vk3A 615 6.22e+01 d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 100846,100847,100848,100849 2c1xA 456 6.28e+01 2g09A 297 6.31e+01 1nal1 297 6.45e+01 1nal3 2bl8A 103 6.46e+01 1e2uA 553 6.49e+01 1e1dA e.26.1.1 43362 2gyqA 175 6.50e+01 1oatA 439 6.63e+01 2dkb c.67.1.4 34461 1gqeA 365 6.65e+01 e.38.1.1 70351 2ghjA 118 6.65e+01 1jipA 403 6.73e+01 a.104.1.1 66748 1fqiA 147 6.76e+01 1agrE a.91.1.1 18542 1fcyA 236 6.81e+01 2lbd a.123.1.1 19282 1dar 691 6.82e+01 1dar b.43.3.1,c.37.1.8,d.14.1.1,d.58.11.1 25707,32142,37547,39300 1yspA 181 6.84e+01 1h3lA 87 6.86e+01 a.177.1.1 76639 2b7oA 464 6.90e+01 2c07A 285 6.95e+01 1vj7A 393 6.96e+01 a.211.1.1,d.218.1.8 100801,100802 1vf6A 83 7.07e+01 a.194.1.1 100600 1rh9A 373 7.08e+01 1b4pA 217 7.11e+01 a.45.1.1,c.47.1.5 83158,83159 1z8uA 102 7.12e+01 2hmqA 113 7.37e+01 2mhr a.24.4.1 16568 1xezA 721 7.38e+01 1sazA 381 7.49e+01 1j1jA 240 7.49e+01 a.118.16.1 90762 2g3kA 94 7.51e+01 1t3wA 148 7.56e+01 1f5nA 592 7.59e+01 1dg3A a.114.1.1,c.37.1.8 19077,32152 1wchA 315 7.59e+01 1z47A 355 7.67e+01 1r1hA 696 7.81e+01 d.92.1.4 104756 1z0kB 69 7.82e+01 1l7mA 211 7.83e+01 c.108.1.4 73664 1lxjA 104 7.85e+01 d.58.48.1 84736 1zxaA 67 7.87e+01 1t98A 287 7.88e+01 1o26A 232 7.88e+01 d.207.1.1 86566 1g24A 211 7.92e+01 1g24A d.166.1.1 42270 1opjA 293 7.97e+01 d.144.1.7 87230 1ppjA 446 7.99e+01 d.185.1.1,d.185.1.1 104252,104253 1ihuA 589 7.99e+01 c.37.1.10,c.37.1.10 62394,62395 1e55A 512 8.07e+01 1e70M c.1.8.4 28934 1o65A 246 8.12e+01 b.58.1.2 92544 1mr8A 93 8.13e+01 1b4cA a.39.1.2 17186 1xuvA 178 8.13e+01 1h49A 512 8.19e+01 c.1.8.4 83477 1uslA 170 8.19e+01 c.121.1.1 99871 1dmtA 696 8.26e+01 1dmtA d.92.1.4 40296 1odoA 408 8.39e+01 a.104.1.1 92783 2btzA 394 8.39e+01 1sflA 238 8.39e+01 1lf6A 684 8.44e+01 a.102.1.5,b.30.5.5 77918,77919 1jekB 36 8.45e+01 1jekB 1ihoA 283 8.48e+01 1ihoA c.26.1.4 62390 1eumA 165 8.61e+01 1eumA a.25.1.1 59507 1babB 146 8.62e+01 1abwA a.1.1.2 15414 1svjA 156 8.68e+01 d.220.1.1 106049 1qusA 322 8.72e+01 1ltm d.2.1.6 36991 1u59A 287 8.73e+01 d.144.1.7 107681 1o1zA 234 8.81e+01 c.1.18.3 86555 1opc 110 8.81e+01 1opc a.4.6.1 16231 2cwoA 197 8.89e+01 1sfjA 238 8.93e+01 2a9kB 223 8.94e+01 1geqA 248 8.96e+01 2tysA c.1.2.4 28589 2d8dA 90 8.98e+01