# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1sumB 235 5.70e-06 a.7.12.1 106025 1xwmA 217 4.27e-04 1vctA 205 6.90e-02 1wkbA 810 1.26e-01 1keaA 221 4.99e-01 a.96.1.2 68491 2f6hX 419 1.20e+00 1ofcX 304 1.48e+00 a.4.1.3,a.4.1.13,a.187.1.1 92826,92827,92828 2ah6A 208 1.50e+00 1j1vA 94 1.60e+00 a.4.12.2 83981 2abk 211 1.70e+00 2abk a.96.1.1 18743 2dc3A 193 1.80e+00 2c6cA 707 1.87e+00 1ouvA 273 1.91e+00 a.118.18.1 93570 1oq9A 363 2.02e+00 a.25.1.2 87257 1keyA 235 2.06e+00 a.118.16.1 72389 1i1iP 681 2.35e+00 1i1iP d.92.1.5 40297 1urvA 190 2.35e+00 1ut0A 190 2.35e+00 a.1.1.2 108012 1afrA 345 2.89e+00 1afrA a.25.1.2 16805 1wphA 201 3.20e+00 1ku1A 230 3.75e+00 a.118.3.1 72996 1kgnA 329 4.31e+00 a.25.1.2 68584 1ithA 141 4.41e+00 1ithA a.1.1.2 15623 1r8mE 203 5.15e+00 a.118.3.1 97242 1u13A 455 5.49e+00 a.104.1.1 107578 2awiA 317 5.56e+00 1wy6A 172 5.68e+00 1vj7A 393 5.83e+00 a.211.1.1,d.218.1.8 100801,100802 1e9xA 455 5.94e+00 1ea1A a.104.1.1 18969 1mkiA 330 6.29e+00 e.3.1.2 84994 1xqsA 280 6.36e+00 1a8h 500 6.43e+00 1a8h a.27.1.1,c.26.1.1 16922,31589 1ir6A 424 6.54e+00 c.107.1.2 71342 1vls 146 6.57e+00 1vls a.24.2.1 16532 1hbnA 549 6.81e+00 1mroA a.89.1.1,d.58.31.2 60898,60899 1mroA 548 6.81e+00 1mroA a.89.1.1,d.58.31.2 18525,39443 1o5hA 214 6.99e+00 a.191.1.1 92497 1rzhM 307 7.15e+00 f.26.1.1 98165 1x8vA 455 7.16e+00 1x42A 232 7.83e+00 1n81A 186 8.11e+00 a.185.1.1 85388 1nvmA 345 8.28e+00 a.5.7.1,c.1.10.5 86249,86250 1xqrA 296 8.45e+00 1j1jA 240 8.74e+00 a.118.16.1 90762 1s4bP 674 9.51e+00 d.92.1.5 105252 1w2yA 229 9.51e+00 a.204.1.1 109140 1woyA 500 9.80e+00 1v4eA 299 1.05e+01 a.128.1.1 100296 1wy0A 342 1.06e+01 1jdhA 529 1.08e+01 a.118.1.1 66549 1wwpA 119 1.14e+01 1i7wA 538 1.17e+01 3bct a.118.1.1 61909 2b7aA 293 1.20e+01 1eexA 554 1.22e+01 1dioA c.1.19.3 29650 1n7sA 63 1.23e+01 h.1.15.1 80271 1hlvA 131 1.25e+01 a.4.1.7,a.4.1.7 65854,65855 1oglA 283 1.25e+01 a.204.1.1 92922 1txuA 273 1.27e+01 a.222.1.1 107439 1zgmA 248 1.45e+01 2fnoA 248 1.45e+01 1n4kA 381 1.46e+01 a.118.22.1,b.42.6.1 79992,79993 1rzhL 281 1.49e+01 f.26.1.1 98164 1gnlA 544 1.52e+01 e.26.1.1 70287 1ld8A 382 1.52e+01 a.118.6.1 73838 1h5zA 455 1.53e+01 a.104.1.1 90622 1in4A 334 1.55e+01 1hqcA a.4.5.11,c.37.1.20 62597,62598 1in6A 334 1.55e+01 1hqcA a.4.5.11,c.37.1.20 62601,62602 1z5hA 780 1.59e+01 1dxrM 323 1.63e+01 6prcM f.26.1.1 43432 1v54A 514 1.65e+01 f.24.1.1 100321 1nznA 126 1.65e+01 a.118.8.1 92382 1xk4A 93 1.67e+01 1ajsA 412 1.71e+01 1ajsA c.67.1.1 34276 1i50A 1733 1.71e+01 e.29.1.2 61754 1twfA 1733 1.79e+01 1cuk 203 1.83e+01 1hjp a.5.1.1,a.60.2.1,b.40.4.2 16273,17946,25265 1qsaA 618 1.89e+01 1qsaA a.118.5.1,d.2.1.6 19182,36988 2cj4A 150 2.00e+01 1yg2A 179 2.05e+01 1tn6A 382 2.05e+01 2b05A 246 2.09e+01 2occA 514 2.14e+01 2occA f.24.1.1 43518 1sgmA 191 2.15e+01 a.4.1.9,a.121.1.1 105537,105538 2db0A 253 2.18e+01 1fgkA 310 2.30e+01 1fgkA d.144.1.7 41693 1wleA 501 2.30e+01 1iw0A 215 2.32e+01 a.132.1.1 83720 1na3A 91 2.32e+01 k.38.1.1 85481 1aisB 200 2.32e+01 1aisB a.74.1.2,a.74.1.2 18384,18385 16vpA 366 2.33e+01 16vpA d.180.1.1 42601 1yozA 116 2.36e+01 1ciy 590 2.38e+01 1ciy b.18.1.3,b.77.2.1,f.1.3.1 23720,27977,43392 1paqA 189 2.43e+01 a.118.1.14 94413 1hw1A 239 2.43e+01 1e2xA a.4.5.6,a.78.1.1 16111,18441 1vljA 407 2.58e+01 e.22.1.2 108832 1k6xA 352 2.63e+01 c.2.1.2 68238 1ka2A 499 2.64e+01 d.92.1.5 77305 1dowA 205 2.66e+01 1dovA a.24.9.1 16626 1sly 618 2.73e+01 1qsaA a.118.5.1,d.2.1.6 19184,36990 1xv5A 401 2.74e+01 1r8sE 203 2.77e+01 a.118.3.1 97248 1mr8A 93 2.77e+01 1b4cA a.39.1.2 17186 1tffA 234 2.84e+01 d.3.1.11 106854 2fq4A 192 2.84e+01 2f31A 233 2.91e+01 1abrA 251 2.92e+01 1mrj d.165.1.1 42196 1h4vB 421 2.94e+01 1adjA c.51.1.1,d.104.1.1 60624,60625 1qusA 322 2.97e+01 1ltm d.2.1.6 36991 2btdA 210 3.00e+01 1jsdB 176 3.03e+01 h.3.1.1 63259 1xlyA 234 3.04e+01 2ct8A 497 3.05e+01 1siqA 392 3.13e+01 a.29.3.1,e.6.1.1 105585,105586 2bw3A 534 3.15e+01 1mqsA 671 3.15e+01 e.25.1.1 79414 1wusA 180 3.16e+01 2aaxA 275 3.18e+01 1lshA 1056 3.19e+01 a.118.4.1,f.7.1.1,f.7.1.1 74242,74243,74244 2fflA 756 3.21e+01 2avpA 70 3.30e+01 1n97A 389 3.32e+01 a.104.1.1 80335 1or3A 165 3.40e+01 1nfn a.24.1.1 16522 1eexG 173 3.41e+01 1dioG a.23.2.1 16490 1chuA 540 3.42e+01 1chuA a.7.3.1,c.3.1.4,d.168.1.1 16325,30424,42307 1c3wA 222 3.42e+01 1c3wA f.13.1.1 43405 1cojA 212 3.45e+01 1avmA a.2.11.1,d.44.1.1 15737,38734 1vhnA 318 3.45e+01 c.1.4.1 100693 1tqgA 105 3.48e+01 a.24.10.3 107224 1s0pA 176 3.49e+01 a.192.1.1 98300 1nm2A 317 3.49e+01 c.19.1.1,d.58.23.1 80654,80655 1xgwA 176 3.51e+01 1puoA 170 3.53e+01 a.101.1.1,a.101.1.1 95134,95135 1cnt1 187 3.58e+01 1cnt3 1nc5A 373 3.58e+01 a.102.1.6 85548 1ngnA 155 3.66e+01 a.96.1.2 85697 1wlmA 151 3.69e+01 1mrj 247 3.69e+01 1mrj d.165.1.1 42177 1gmjA 84 3.71e+01 h.4.8.1 65310 1wy5A 317 3.81e+01 1pbv 195 3.82e+01 1pbv a.118.3.1 19179 1tv9A 335 3.85e+01 1ho8A 480 3.86e+01 1ho8A a.118.1.9 61107 1q0gA 117 3.86e+01 a.24.22.1 104428 1h2kA 349 3.88e+01 b.82.2.6 76572 1h3lA 87 3.89e+01 a.177.1.1 76639 1hr6B 443 3.93e+01 1be3A d.185.1.1,d.185.1.1 61166,61167 2bptA 861 3.94e+01 1iwhA 141 3.95e+01 a.1.1.2 76882 1xgkA 352 4.02e+01 1lf6A 684 4.05e+01 a.102.1.5,b.30.5.5 77918,77919 1np3A 338 4.09e+01 a.100.1.2,c.2.1.6 85946,85947 1wzdA 215 4.09e+01 2fbnA 198 4.10e+01 1h5uA 842 4.12e+01 1a8i c.87.1.4 60655 2az0A 73 4.13e+01 2csgA 424 4.18e+01 1dkzA 219 4.20e+01 1dkzA a.8.4.1,b.130.1.1 90345,90346 2fpqA 444 4.24e+01 1g8iA 190 4.24e+01 1rec a.39.1.5 60363 1a8i 842 4.25e+01 1a8i c.87.1.4 35490 2bb6A 414 4.32e+01 1n7oA 721 4.39e+01 a.102.3.2,b.24.1.1,b.30.5.2 80259,80260,80261 1zs9A 261 4.41e+01 2e2aA 105 4.45e+01 a.7.2.1 88499 1m48A 133 4.49e+01 a.26.1.2 74443 1d8dA 377 4.49e+01 1ft1A a.118.6.1 19185 1utg 70 4.50e+01 1utg a.101.1.1 18813 1vdkA 466 4.59e+01 a.127.1.1 100561 1sd4A 126 4.59e+01 a.4.5.39 105428 1ornA 226 4.67e+01 a.96.1.1 87342 1ei1A 391 4.76e+01 1aj6 d.14.1.3,d.122.1.2 37570,41104 1q5nA 454 4.82e+01 a.127.1.1 95901 1jk0B 345 4.84e+01 a.25.1.2 63143 2a5yA 204 4.86e+01 2utgA 70 4.86e+01 1utg a.101.1.1 18814 1eguA 731 4.87e+01 1eguA a.102.3.2,b.24.1.1,b.30.5.2 18850,23899,24423 1v54J 59 4.91e+01 f.23.4.1 100331 2occJ 59 4.91e+01 2occJ f.23.4.1 43524 1zbpA 273 4.92e+01 1x0vA 354 4.95e+01 1vi0A 206 4.96e+01 a.4.1.9,a.121.1.1 100720,100721 1r2fA 319 5.14e+01 1r2fA a.25.1.2 16800 1gtmA 419 5.19e+01 1hwyA c.2.1.7,c.58.1.1 30223,33871 1wcrA 103 5.22e+01 1z72A 225 5.22e+01 1wmuB 146 5.24e+01 a.1.1.2 109417 1k04A 162 5.25e+01 a.24.14.1 67904 1gvhA 396 5.30e+01 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 1l3aA 228 5.30e+01 d.18.1.2 73531 1a17 166 5.32e+01 1a17 a.118.8.1 19206 1po5A 476 5.38e+01 a.104.1.1 94963 1mgtA 174 5.46e+01 1mgtA a.4.2.1,c.55.7.1 16078,33753 1q8hA 49 5.47e+01 g.32.1.1 96207 1z2cB 383 5.56e+01 1ash 150 5.64e+01 1ash a.1.1.2 15622 1khyA 148 5.67e+01 a.174.1.1 77410 1sfjA 238 5.74e+01 1eq1A 166 5.80e+01 a.63.1.1 64910 2f2bA 246 5.88e+01 1rj1A 151 5.92e+01 a.29.6.1 97526 1z82A 335 5.94e+01 1ez0A 510 5.96e+01 1eyyA c.82.1.1 35385 2es4D 332 5.99e+01 2ch7A 309 6.01e+01 1fxxA 482 6.01e+01 1fxxA c.55.3.5 33726 1sflA 238 6.02e+01 2ethA 154 6.06e+01 1jk0A 419 6.10e+01 a.25.1.2 63142 1azsA 220 6.16e+01 1azsA d.58.29.1 39416 1oj6A 151 6.17e+01 a.1.1.2 93088 2bk9A 153 6.27e+01 1n9dA 199 6.29e+01 a.26.1.1 85464 1oz9A 150 6.29e+01 d.92.1.15 93808 2aelA 374 6.30e+01 1n93X 375 6.40e+01 a.206.1.1 91707 1qpcA 279 6.42e+01 1fgkA d.144.1.7 41685 1r9kA 172 6.45e+01 a.168.1.1 104869 1h3nA 878 6.48e+01 a.27.1.1,b.51.1.1,c.26.1.1 76641,76642,76643 1us6A 102 6.56e+01 a.2.13.1 107999 2az2A 73 6.57e+01 2cbiA 594 6.65e+01 1zroA 602 6.68e+01 1a41 234 6.81e+01 1a41 d.163.1.2 42174 1x1iA 752 6.87e+01 2ayuA 417 6.95e+01 1kkcA 221 7.07e+01 a.2.11.1,d.44.1.1 68660,68661 1giqA 413 7.08e+01 d.166.1.1,d.166.1.1 76224,76225 1orjA 130 7.11e+01 a.24.19.1 93456 1e7lA 157 7.13e+01 1en7A a.140.4.1,d.4.1.5 64728,64729 1qlnA 883 7.13e+01 1cezA e.8.1.3 43111 1dvpA 220 7.15e+01 1dvpA a.118.9.2,g.50.1.1 19216,45358 1dk8A 147 7.15e+01 1agrE a.91.1.1 18548 1bu7A 455 7.18e+01 1bu7A a.104.1.1 18937 1hlgA 371 7.23e+01 1hlgA c.69.1.6 34656 1t9kA 347 7.26e+01 c.124.1.5 106721 1h6pA 203 7.27e+01 a.146.1.1 60690 2fk8A 318 7.34e+01 1m7kA 99 7.34e+01 a.7.7.1 74573 2cwcA 303 7.40e+01 1bupA 386 7.47e+01 1ba1 c.55.1.1,c.55.1.1 33377,33378 2fmpA 335 7.52e+01 1q5zA 177 7.57e+01 a.196.1.1 95954 1h4pA 408 7.58e+01 c.1.8.3 90617 1oxjA 173 7.67e+01 a.60.1.2,a.118.1.13 87517,87518 1vp7A 100 7.76e+01 1u61A 138 7.77e+01 a.149.1.1 107696 2be3A 226 7.78e+01 1vkeA 133 7.80e+01 a.152.1.2 108650 1hx1B 114 7.81e+01 1hx1B a.7.7.1 61350 1d2tA 231 7.93e+01 1d2tA a.111.1.1 19052 2d5xA 141 7.94e+01 1x3zA 335 8.03e+01 1elrA 131 8.07e+01 1a17 a.118.8.1 19209 2ashA 381 8.10e+01 1wqgA 185 8.14e+01 1m0kA 262 8.17e+01 f.13.1.1 78344 1gw5A 621 8.20e+01 a.118.1.10 70629 2cfuA 658 8.21e+01 1jnrA 643 8.25e+01 a.7.3.1,c.3.1.4,d.168.1.1 66966,66967,66968 1ta3A 274 8.33e+01 c.1.8.5 106731 1om0A 274 8.33e+01 c.1.8.5 87058 1vpdA 299 8.34e+01 1pszA 303 8.39e+01 1toaA c.92.2.2 35600 1my6A 199 8.47e+01 a.2.11.1,d.44.1.1 85232,85233 1z1lA 345 8.54e+01 2aqjA 538 8.60e+01 1skoA 143 8.69e+01 d.110.7.1 105676 1fvkA 189 8.72e+01 1fvkA c.47.1.13 90351 2f1kA 279 8.76e+01 1jq0A 84 8.76e+01 h.3.2.1 71786 1mxrA 375 8.79e+01 a.25.1.2 85197 2a5kA 307 8.97e+01