# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1sumB 235 2.57e-11 a.7.12.1 106025 1xwmA 217 6.39e-07 1hw1A 239 9.95e-02 1e2xA a.4.5.6,a.78.1.1 16111,18441 1jkvA 266 3.60e-01 a.25.1.3 71719 1sd4A 126 3.95e-01 a.4.5.39 105428 1o5hA 214 4.25e-01 a.191.1.1 92497 1vctA 205 8.34e-01 1vljA 407 1.03e+00 e.22.1.2 108832 1o9iA 266 1.30e+00 a.25.1.3 92671 1t0iA 191 1.34e+00 c.23.5.4 106209 2bduA 297 1.91e+00 2g09A 297 2.06e+00 1e0bA 68 2.59e+00 1e0bA b.34.13.2 37476 1eerA 166 2.74e+00 1eerA a.26.1.2 16846 1qmqA 414 3.45e+00 1phd a.104.1.1 18907 1j1vA 94 3.46e+00 a.4.12.2 83981 1urvA 190 3.60e+00 1ut0A 190 3.60e+00 a.1.1.2 108012 1bmtA 246 3.84e+00 1bmtA a.46.1.1,c.23.6.1 17757,31235 2b7aA 293 3.98e+00 1okrA 123 4.07e+00 a.4.5.39 93269 1jipA 403 4.50e+00 a.104.1.1 66748 1s4bP 674 5.13e+00 d.92.1.5 105252 1re9A 414 5.32e+00 2avpA 70 5.90e+00 1keaA 221 7.30e+00 a.96.1.2 68491 1dz4A 414 8.44e+00 1phd a.104.1.1 18903 1ygs 234 9.08e+00 1ygs b.26.1.1 23907 1z8oA 404 9.18e+00 1j97A 211 9.81e+00 1f5sA c.108.1.4 62753 1yrcA 414 9.86e+00 1ohuA 175 9.90e+00 f.1.4.1 93029 1n81A 186 1.05e+01 a.185.1.1 85388 1q59A 172 1.08e+01 f.1.4.1 95881 1e4mM 501 1.08e+01 1e70M c.1.8.4 59226 1zczA 464 1.10e+01 1rv3A 483 1.23e+01 c.67.1.4 105101 2abk 211 1.29e+01 2abk a.96.1.1 18743 1q8hA 49 1.29e+01 g.32.1.1 96207 1in6A 334 1.36e+01 1hqcA a.4.5.11,c.37.1.20 62601,62602 1eupA 403 1.38e+01 1rom a.104.1.1 18967 1bg1A 722 1.40e+01 1bg1A a.47.1.1,b.2.5.5,d.93.1.1 17767,22461,40527 1ymtA 246 1.47e+01 1l8rA 101 1.47e+01 a.6.1.4 73700 2myr 501 1.57e+01 1a8i 842 1.61e+01 1a8i c.87.1.4 35490 1jpzA 473 1.61e+01 a.104.1.1 67069 1oj6A 151 1.61e+01 a.1.1.2 93088 2bk9A 153 1.72e+01 2a5yA 204 1.78e+01 1k3pA 426 1.80e+01 a.103.1.1 77237 1tqgA 105 1.80e+01 a.24.10.3 107224 1cpt 412 1.81e+01 1cpt a.104.1.1 18968 1in4A 334 1.87e+01 1hqcA a.4.5.11,c.37.1.20 62597,62598 2d2mD 145 1.88e+01 1t33A 224 1.89e+01 a.4.1.9,a.121.1.1 106295,106296 1t9bA 677 1.91e+01 1v4xA 144 1.93e+01 a.1.1.2 108363 1l7mA 211 1.95e+01 c.108.1.4 73664 1skoA 143 2.03e+01 d.110.7.1 105676 1k6xA 352 2.11e+01 c.2.1.2 68238 1zrzA 364 2.11e+01 1s0pA 176 2.19e+01 a.192.1.1 98300 2pth 193 2.19e+01 2pth c.56.3.1 33793 1ffyA 917 2.27e+01 1qu2A a.27.1.1,b.51.1.1,c.26.1.1 16926,26891,31593 1xgkA 352 2.27e+01 1chmA 401 2.29e+01 1chmA c.55.2.1,d.127.1.1 33545,41142 1kinA 366 2.36e+01 1wy6A 172 2.39e+01 1qpcA 279 2.39e+01 1fgkA d.144.1.7 41685 1mym 154 2.41e+01 1a6m a.1.1.2 15054 1q0gA 117 2.48e+01 a.24.22.1 104428 1qw9A 502 2.55e+01 b.71.1.2,c.1.8.3 96466,96467 1vmeA 410 2.57e+01 c.23.5.1,d.157.1.3 108893,108894 1h5uA 842 2.69e+01 1a8i c.87.1.4 60655 1elkA 157 2.69e+01 1dvpA a.118.9.2 19217 1ij2A 34 2.74e+01 h.1.3.1 62474 1uujA 88 2.75e+01 a.221.1.1 108046 1o5kA 306 2.83e+01 c.1.10.1 92504 1fqiA 147 2.85e+01 1agrE a.91.1.1 18542 1z7mA 344 2.86e+01 1chuA 540 2.87e+01 1chuA a.7.3.1,c.3.1.4,d.168.1.1 16325,30424,42307 2awiA 317 2.91e+01 1vykA 149 2.95e+01 1sr9A 644 3.10e+01 a.5.7.1,c.1.10.5,d.270.1.1 105960,105961,105962 2dc3A 193 3.12e+01 1na3A 91 3.17e+01 k.38.1.1 85481 1hr6B 443 3.34e+01 1be3A d.185.1.1,d.185.1.1 61166,61167 1ir6A 424 3.35e+01 c.107.1.2 71342 1p7gA 222 3.42e+01 a.2.11.1,d.44.1.1 94223,94224 1c3mA 147 3.43e+01 1jotA b.77.3.1 27983 1n7sA 63 3.54e+01 h.1.15.1 80271 1bu7A 455 3.55e+01 1bu7A a.104.1.1 18937 2f42A 179 3.72e+01 2e2aA 105 3.74e+01 a.7.2.1 88499 1kwgA 645 3.88e+01 b.71.1.1,c.1.8.1,c.23.16.5 77561,77562,77563 1ho8A 480 3.91e+01 1ho8A a.118.1.9 61107 1vhcA 224 3.94e+01 c.1.10.1 100661 1v33A 366 4.03e+01 d.264.1.1 100278 2fupA 168 4.29e+01 1odoA 408 4.38e+01 a.104.1.1 92783 1em8B 112 4.51e+01 c.126.1.1 90458 1irdA 141 4.61e+01 a.1.1.2 66286 2fnaA 357 4.74e+01 1mwwA 128 4.80e+01 d.80.1.4 91483 1fgkA 310 4.83e+01 1fgkA d.144.1.7 41693 6paxA 133 5.04e+01 6paxA a.4.1.5,a.4.1.5 64758,64759 1ei7A 158 5.10e+01 1rmvA a.24.5.1 16584 2etsA 128 5.11e+01 1d02A 202 5.20e+01 1d02A c.52.1.8 33313 2d5xA 141 5.22e+01 1vhnA 318 5.33e+01 c.1.4.1 100693 2blnA 305 5.34e+01 1iqoA 88 5.40e+01 d.214.1.1 71277 1f83B 24 5.44e+01 j.72.1.1 46368 1ylmA 144 5.47e+01 1xezA 721 5.47e+01 1zbpA 273 5.63e+01 1cuk 203 5.67e+01 1hjp a.5.1.1,a.60.2.1,b.40.4.2 16273,17946,25265 1wmhA 89 5.68e+01 2g2dA 193 5.70e+01 1r8mE 203 5.74e+01 a.118.3.1 97242 1q5dA 419 5.78e+01 a.104.1.1 95891 1pqxA 91 5.89e+01 d.267.1.1 104296 1izmA 184 5.93e+01 a.199.1.1 90725 1ovaA 386 5.96e+01 1ovaA e.1.1.1 42619 1o60A 292 6.11e+01 c.1.10.4 92532 3caoA 103 6.21e+01 3caoA a.138.1.1 19661 1r0vA 305 6.25e+01 c.52.2.1,c.52.2.1,d.75.1.1 96742,96743,96744 1pbv 195 6.36e+01 1pbv a.118.3.1 19179 1e2aA 105 6.42e+01 1e2aA a.7.2.1 16322 1qqeA 292 6.51e+01 1qqeA a.118.8.1 19210 1rw6A 210 6.61e+01 a.47.4.1 105113 1bf5A 545 6.64e+01 1bg1A a.47.1.1,b.2.5.5,d.93.1.1 17766,22460,40526 2b3hA 329 6.64e+01 1rcwA 231 6.71e+01 a.132.1.4 97299 1r8sE 203 6.75e+01 a.118.3.1 97248 1iwhA 141 6.85e+01 a.1.1.2 76882 2cy5A 140 6.93e+01 1e79H 146 7.02e+01 1e79H a.2.10.1,b.93.1.1 15721,28438 1mxrA 375 7.02e+01 a.25.1.2 85197 1q1fA 151 7.06e+01 a.1.1.2 104476 1spgA 144 7.06e+01 1abwA a.1.1.2 15409 1elrA 131 7.09e+01 1a17 a.118.8.1 19209 1ej5A 107 7.10e+01 1ej5A a.68.1.1 18268 1io1A 398 7.14e+01 1io1A e.32.1.1 62611 1mll 154 7.28e+01 1a6m a.1.1.2 15057 1obbA 480 7.29e+01 c.2.1.5,d.162.1.2 86760,86761 1o65A 246 7.36e+01 b.58.1.2 92544 1n9dA 199 7.43e+01 a.26.1.1 85464 1zxaA 67 7.43e+01 1w5fA 353 7.47e+01 1st0A 337 7.76e+01 d.13.1.3,d.246.1.1 98979,98980 1dwtA 153 7.86e+01 1a6m a.1.1.2 15190 1vp4A 425 7.89e+01 1twfB 1224 7.90e+01 1kkcA 221 8.02e+01 a.2.11.1,d.44.1.1 68660,68661 1aep 161 8.05e+01 1aep a.63.1.1 18139 1g6aA 271 8.07e+01 1btl e.3.1.1 42704 1a7cA 379 8.19e+01 1sek e.1.1.1 42660 1ubeA 349 8.24e+01 c.37.1.11,d.48.1.1 88412,88413 1hs7A 97 8.35e+01 1hs7A a.47.2.1 61236 1d7uA 433 8.46e+01 2dkb c.67.1.4 34439 1qa5A 58 8.50e+01 1qa5A j.52.1.1 46335 2gyqA 175 8.61e+01 1wcgA 464 8.62e+01 2d8dA 90 8.63e+01 1babA 143 8.66e+01 1abwA a.1.1.2 15235 1e2kA 331 8.68e+01 1qhiA c.37.1.1 31854 1qa4A 57 8.73e+01 1qa4A j.52.1.1 46334 1bj4A 470 8.78e+01 1bj4A c.67.1.4 34479 2b8iA 77 8.78e+01