# List of top-scoring protein chains for T0364.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1njkA 156 1.95e-10 d.38.1.1 85818 2cyeA 133 3.82e-10 1z54A 132 1.73e-09 1s5uA 138 2.88e-09 d.38.1.1 98573 2aliA 158 8.92e-08 2av9A 147 1.04e-07 2gf6A 135 3.53e-07 1lo7A 141 1.38e-04 d.38.1.1 74144 1lo9A 141 3.33e-04 d.38.1.1 74146 2h4uA 145 7.44e-04 2cy9A 140 1.37e-03 2essA 248 1.43e-03 2b3nA 159 4.39e-02 1yliA 153 4.51e-02 2gvhA 288 9.58e-02 1wluA 136 9.97e-02 1ixlA 131 1.14e-01 d.38.1.5 90717 1zkiA 133 1.67e-01 1t82A 155 3.72e-01 d.38.1.5 106639 1u1zA 168 4.27e-01 d.38.1.6 107602 1vpmA 169 4.58e-01 1psuA 140 7.41e-01 d.38.1.5 88285 2fs2A 151 7.81e-01 1iq6A 134 2.59e+00 d.38.1.4 76755 2cwzA 141 3.48e+00 1kz4A 159 3.78e+00 c.16.1.1 73323 2b6eA 146 3.88e+00 2a59A 159 4.03e+00 1kz1A 159 4.04e+00 c.16.1.1 73318 1kyyA 159 4.04e+00 c.16.1.1 73307 1y7uA 174 4.15e+00 1o0iA 138 4.74e+00 d.38.1.5 86532 1c8uA 285 5.01e+00 1c8uA d.38.1.3,d.38.1.3 38547,38548 2fl8A 602 5.89e+00 1q4uA 151 6.03e+00 d.38.1.5 95828 2bdvA 231 6.50e+00 1q6wA 161 6.58e+00 d.38.1.4 96000 1kz6A 159 6.71e+00 c.16.1.1 73328 1kz9A 159 7.20e+00 c.16.1.1 73339 1khbA 625 7.31e+00 c.91.1.1,c.109.1.1 68606,68607 2f4pA 147 7.58e+00 1vqvA 306 7.65e+00 1re3C 311 9.21e+00 d.171.1.1,h.1.8.1 104894,104895 1rf1C 311 9.26e+00 d.171.1.1,h.1.8.1 97351,97352 1fzcC 319 9.33e+00 3fib d.171.1.1,h.1.8.1 42461,45592 1n86C 324 9.35e+00 d.171.1.1,h.1.8.1 80280,80281 2fibA 269 9.54e+00 3fib d.171.1.1 42457 3fib 249 9.88e+00 3fib d.171.1.1 42455 2f4lA 297 1.08e+01 1wguA 136 1.09e+01 2a4eA 215 1.14e+01 1deqC 411 1.26e+01 i.9.1.1 45995 1ywyA 74 1.32e+01 1n73C 330 1.54e+01 d.171.1.1,h.1.8.1 80217,80218 1lwuC 323 1.59e+01 d.171.1.1,h.1.8.1 74312,74313 1hc1 657 1.71e+01 1lla a.85.1.1,a.86.1.1,b.1.18.3 18494,18505,21870 1pk5A 248 1.74e+01 a.123.1.1 88139 1zh7A 243 1.80e+01 1dv4E 145 1.86e+01 i.1.1.3 45875 1eg0B 148 1.88e+01 1pkp i.1.1.1 45808 1pkp 150 1.89e+01 1pkp d.14.1.1,d.50.1.2 37551,38787 1wuuA 399 2.03e+01 1zhgA 139 2.05e+01 1ixrA 191 2.21e+01 a.60.2.1,b.40.4.2 76925,76926 1z6bA 154 2.23e+01 1b66A 140 2.28e+01 1b66A d.96.1.2 40657 1oysA 245 2.34e+01 d.14.1.4,d.101.1.1 93758,93759 1oypA 245 2.42e+01 d.14.1.4,d.101.1.1 93734,93735 1lm6A 215 2.47e+01 d.167.1.1 84628 2aieP 203 2.54e+01 1rcqA 357 2.56e+01 b.49.2.2,c.1.6.1 104882,104883 2aiaA 203 2.56e+01 1ws0A 156 2.65e+01 1ltxR 650 2.69e+01 c.3.1.3,d.16.1.6 84715,84716 1vg0A 650 2.71e+01 c.3.1.3,d.16.1.6 108596,108597 1x9eA 383 2.75e+01 1yslA 402 2.88e+01 2a4cA 99 2.93e+01 1g43A 160 3.06e+01 1nbcA b.2.2.2 22392 1jvqI 432 3.23e+01 e.1.1.1 84232 1oyhI 432 3.23e+01 e.1.1.1 93727 1dzgI 432 3.23e+01 1ovaA e.1.1.1 42656 1dzhI 432 3.24e+01 1ovaA e.1.1.1 42652 1ezrA 314 3.24e+01 2masA c.70.1.1 34816 2f6eA 127 3.78e+01 1vh5A 148 4.05e+01 d.38.1.5 100642 1tb6I 432 4.30e+01 e.1.1.1 106738 1sh8A 154 4.31e+01 d.38.1.5 105549 2azjA 289 4.41e+01 2aw4P 114 4.45e+01 1widA 130 4.47e+01 2c9kA 612 4.51e+01 2a62A 322 4.60e+01 2azkA 289 4.64e+01 1szzA 177 4.68e+01 1iapA 211 4.78e+01 a.91.1.1 62119 1ek9A 428 4.85e+01 1ek9A f.5.1.1 43809 2coaA 125 4.87e+01 1yv9A 264 5.02e+01 1fi8C 84 5.04e+01 1sluA b.16.1.1 23693 1eif 135 5.13e+01 1bkb b.34.5.2,b.40.4.5 24608,25340 1shzC 233 5.15e+01 2eifA 136 5.16e+01 1bkb b.34.5.2,b.40.4.5 24607,25339 2gd4C 443 5.35e+01 1ckiA 317 5.36e+01 1csn d.144.1.7 41660 2gc1A 188 5.38e+01 1qxrA 189 5.40e+01 b.82.1.7 96552 1sbkA 144 5.40e+01 d.38.1.5 98791 1x82A 190 5.44e+01 1adqL 213 5.46e+01 8fabA b.1.1.1,b.1.1.2 20272,21272 2a3mA 130 5.52e+01 1iilE 220 5.60e+01 1cvsC b.1.1.4,b.1.1.4 62437,62438 2fdbP 220 5.61e+01 1tqqA 471 5.70e+01 f.5.1.1 107242 1z0hA 438 5.78e+01 1w9hA 427 5.87e+01 1b8aA 438 5.97e+01 1b8aA b.40.4.1,d.104.1.1 25244,40765 1tr9A 341 6.01e+01 1y65A 342 6.02e+01 2ewrA 170 6.49e+01 1s7aA 103 6.61e+01 a.4.5.46 98633 1stfI 98 6.64e+01 1stfI d.17.1.2 38006 1n2tA 386 6.73e+01 c.67.1.3 79858 1eluA 390 6.73e+01 1elqA c.67.1.3 34434 1jyhA 157 6.74e+01 d.60.1.3 71956 1ah9 71 6.75e+01 1ah9 b.40.4.5 25330 1w4vA 119 6.78e+01 1vorQ 125 6.92e+01 1s5jA 847 7.06e+01 2fclA 169 7.06e+01 1y6hA 177 7.13e+01 1zdzA 302 7.17e+01 1squA 155 7.27e+01 d.252.1.1 98971 1lilA 212 7.36e+01 8fabA b.1.1.1,b.1.1.2 20557,21466 1o1uA 127 7.41e+01 b.60.1.2 81076 1zovA 386 7.47e+01 1xkoA 159 7.49e+01 2gsrA 207 7.68e+01 1pgtA a.45.1.1,c.47.1.5 17586,32880 2cb4A 291 7.71e+01 1yyfC 181 7.72e+01 1hv9A 456 7.85e+01 1fwyA b.81.1.4,c.68.1.5 28060,34518 1zl9A 207 8.11e+01 1nkwN 166 8.23e+01 i.1.1.2 80599 1aohA 147 8.23e+01 1aohA b.2.2.2 22401 1epwA 1290 8.38e+01 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 1fvqA 72 8.48e+01 1aw0 d.58.17.1 60046 1juhA 350 8.63e+01 b.82.1.5 71884 1ezuA 142 8.83e+01 1sluA b.16.1.1 23695 1uh4A 637 8.86e+01 b.1.18.2,b.71.1.1,c.1.8.1 99391,99392,99393 1izkA 637 8.86e+01 b.1.18.2,b.71.1.1,c.1.8.1 83844,83845,83846 1ji1A 637 8.87e+01 b.1.18.2,b.71.1.1,c.1.8.1 71666,71667,71668 1izjA 637 8.87e+01 b.1.18.2,b.71.1.1,c.1.8.1 83841,83842,83843