# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2cyeA 133 3.81e-15 1s5uA 138 1.15e-14 d.38.1.1 98573 1z54A 132 9.18e-14 2aliA 158 2.14e-12 2gf6A 135 6.11e-12 1yliA 153 3.91e-11 1vpmA 169 5.31e-11 1lo7A 141 1.50e-10 d.38.1.1 74144 2essA 248 3.80e-10 2gvhA 288 1.13e-07 2h4uA 145 8.80e-07 2fs2A 151 4.47e-05 1wluA 136 1.50e-04 1j1yA 136 1.69e-04 d.38.1.5 90776 1ixlA 131 3.48e-04 d.38.1.5 90717 1zkiA 133 6.68e-04 2b3nA 159 4.18e-03 2cwzA 141 9.26e-03 1q4uA 151 1.20e-02 d.38.1.5 95828 1iq6A 134 1.92e-02 d.38.1.4 76755 1o0iA 138 2.39e-02 d.38.1.5 86532 1c8uA 285 5.09e-02 1c8uA d.38.1.3,d.38.1.3 38547,38548 2bi0A 337 2.15e-01 1vh5A 148 2.37e-01 d.38.1.5 100642 1z6bA 154 3.26e-01 1sh8A 154 5.75e-01 d.38.1.5 105549 1t82A 155 6.85e-01 d.38.1.5 106639 1nlbH 218 1.72e+00 b.1.1.1,b.1.1.2 80621,80622 1i3zA 103 3.94e+00 d.93.1.1 83667 1mvlA 209 6.28e+00 c.34.1.1 85146 3fib 249 7.28e+00 3fib d.171.1.1 42455 1yb5A 351 7.42e+00 1u7kA 131 7.66e+00 1d3yA 301 7.80e+00 1d3yA e.12.1.1 43252 1te5A 257 8.83e+00 d.153.1.1 106795 1js8A 394 8.85e+00 a.86.1.1,b.112.1.1 67219,67220 2booA 247 1.00e+01 1to6A 371 1.01e+01 c.141.1.1 107170 1k78A 149 1.11e+01 a.4.1.5,a.4.1.5 68255,68256 2aioA 269 1.18e+01 1lc5A 364 1.20e+01 c.67.1.1 73827 1ox0A 430 1.25e+01 c.95.1.1,c.95.1.1 87495,87496 1ne8A 117 1.27e+01 b.34.6.2 80424 1mxmA 254 1.27e+01 b.38.1.3,d.58.43.1,f.34.1.1 79647,79648,79649 1j05B 121 1.33e+01 b.1.1.1 90736 1u09A 476 1.46e+01 e.8.1.4 107545 2f8lA 344 1.53e+01 1iqzA 81 1.76e+01 d.58.1.4 66281 2bm3A 166 1.82e+01 1t4wA 196 1.86e+01 b.2.5.2 106427 1zxkA 98 1.93e+01 1mk4A 157 1.99e+01 d.108.1.1 84979 1a8q 274 2.01e+01 1brt c.69.1.12 34702 2f4lA 297 2.14e+01 1qftA 175 2.18e+01 1qftA b.60.1.1 27151 8fabA 212 2.23e+01 8fabA b.1.1.1,b.1.1.2 19772,20882 1khbA 625 2.23e+01 c.91.1.1,c.109.1.1 68606,68607 1whnA 128 2.30e+01 1vflA 356 2.34e+01 1yoeA 322 2.39e+01 1r7jA 95 2.57e+01 a.4.5.49 104836 1vjzA 341 2.64e+01 c.1.8.3 100838 1tbaA 67 2.64e+01 1tbaA a.15.1.1 16380 1n4xH 120 2.68e+01 b.1.1.1 85324 1yq2A 1024 2.71e+01 1kt6A 183 2.72e+01 b.60.1.1 84466 1j5uA 136 2.82e+01 d.208.1.1 71584 1hkhA 279 3.21e+01 c.69.1.12 90628 2bmwA 304 3.23e+01 1txqA 93 3.29e+01 1qfoA 119 3.34e+01 1qfoA b.1.1.1 19708 1z6mA 175 3.35e+01 1m3sA 186 3.39e+01 c.80.1.3 78573 1ok8A 394 3.40e+01 b.1.18.4,f.10.1.1 93236,93237 1f8rA 498 3.41e+01 1f8rA c.3.1.2,d.16.1.5 30410,37974 2c0rA 362 3.43e+01 1l6eA 46 3.56e+01 a.31.1.1 73607 1q0xH 221 3.64e+01 b.1.1.1,b.1.1.2 95517,95518 1akhA 61 3.65e+01 1akhA a.4.1.1 15980 1z2iA 358 3.73e+01 1oaqH 121 3.77e+01 b.1.1.1 92707 1aohA 147 3.81e+01 1aohA b.2.2.2 22401 1n8vA 112 3.89e+01 a.118.21.1 85457 1qv9A 283 3.95e+01 c.127.1.1 96356 1r7lA 110 4.08e+01 d.277.1.1 104837 1jykA 254 4.09e+01 c.68.1.13 67458 1r77A 103 4.11e+01 1ojrA 274 4.17e+01 c.74.1.1 93147 1pp7U 131 4.17e+01 a.4.5.44 94973 1ogiA 303 4.25e+01 b.43.4.2,c.25.1.1 92914,92915 1xx6A 191 4.26e+01 1tuoA 464 4.27e+01 4ubpB 126 4.29e+01 1ubpB b.85.3.1 28345 1bgvA 449 4.32e+01 1k89 c.2.1.7,c.58.1.1 30217,33865 1fnd 314 4.34e+01 1fnc b.43.4.2,c.25.1.1 25626,31516 1jkoC 52 4.37e+01 a.4.1.2 66809 2gatA 66 4.40e+01 1gatA g.39.1.1 45102 1q3iA 214 4.54e+01 d.220.1.1 104524 1ulrA 88 4.57e+01 2a72A 146 4.57e+01 2c8mA 262 4.65e+01 2ap1A 327 4.69e+01 2b7uA 257 4.72e+01 1vjqA 79 4.73e+01 k.43.1.1 100830 1g7nA 131 4.73e+01 b.60.1.2 83274 2bc4A 211 4.79e+01 1mrg 263 4.86e+01 1mrj d.165.1.1 42183 1vr5A 547 4.90e+01 1rcqA 357 4.98e+01 b.49.2.2,c.1.6.1 104882,104883 1tyjA 170 5.03e+01 1e8yA 966 5.09e+01 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19152,23187,37635,41715 1mjuL 219 5.14e+01 b.1.1.1,b.1.1.2 91304,91305 2cqeA 98 5.22e+01 1nkqA 259 5.24e+01 d.177.1.1 103862 1w66A 232 5.34e+01 1mqkH 127 5.59e+01 b.1.1.1 85053 2ew0A 192 5.68e+01 1qd1A 325 5.82e+01 1qd1A d.58.34.1,d.58.34.1 39493,39494 1j6oA 268 5.92e+01 c.1.9.12 77088 2b8tA 223 5.95e+01 1bsmA 201 6.39e+01 1avmA a.2.11.1,d.44.1.1 15780,38743 1tc5A 194 6.44e+01 c.110.1.1 106752 1puc 105 6.55e+01 1puc d.97.1.1 40675 1bx1A 314 6.63e+01 1fnc b.43.4.2,c.25.1.1 25629,31519 1s4kA 120 6.70e+01 a.35.1.6 105254 2f4pA 147 6.78e+01 1jmsA 381 6.80e+01 a.60.6.1,a.60.12.1,d.218.1.2 66889,75862,75863 1g79A 218 6.81e+01 1ci0A b.45.1.1 25752 1g5aA 628 6.82e+01 b.71.1.1,c.1.8.1 65152,65153 2ct9A 208 6.88e+01 1jbeA 128 6.89e+01 3chy c.23.1.1 62845 2agyA 361 6.94e+01 1uhnA 189 6.98e+01 a.39.1.5 99399 2gpzA 111 6.99e+01 2aieP 203 7.04e+01 1nxuA 333 7.14e+01 c.122.1.1 86389 1f7lA 121 7.15e+01 1f7lA d.150.1.2 59666 2f6hX 419 7.16e+01 1q1vA 70 7.18e+01 a.159.4.1 104479 1y74A 57 7.20e+01 2f3yA 148 7.29e+01 1oj4A 283 7.38e+01 d.14.1.5,d.58.26.5 93083,93084 2c0hA 353 7.38e+01 2c8sA 172 7.57e+01 1t8hA 277 7.59e+01 d.194.1.2 106664 1ummA 172 7.60e+01 a.3.1.1 107958 2grrB 170 7.62e+01 1u2cA 246 7.88e+01 b.1.6.2,d.272.1.1 107610,107611 1umqA 81 7.90e+01 a.4.1.12 99625 1e3oC 160 7.95e+01 1au7A a.4.1.1,a.35.1.1 59197,59198 2aplA 157 7.98e+01 1yl3V 253 8.14e+01 1tbuA 118 8.16e+01 2etbA 256 8.21e+01 1fbr 93 8.24e+01 1fbr g.27.1.1,g.27.1.1 44948,44949 2ezvA 269 8.28e+01 1fs1A 53 8.32e+01 1fqvA a.158.1.1 19250 1omrA 201 8.33e+01 a.39.1.5 93349 1ynlH 219 8.34e+01 1hlqA 75 8.38e+01 g.35.1.1 83613 1wf3A 301 8.39e+01 1wy1A 172 8.50e+01 1fjlA 81 8.53e+01 2hddA a.4.1.1 16017 1gp6A 356 8.57e+01 b.82.2.1 65441 2hntE 81 8.63e+01 1ucyH 1gj7B 253 8.63e+01 1u9cA 224 8.66e+01 1of5A 221 8.69e+01 d.17.4.2 86933 1rzfL 213 8.80e+01 b.1.1.1,b.1.1.2 98152,98153 1bjt 793 8.82e+01 1bjt e.11.1.1 43249 1if1A 113 8.90e+01 2irfG a.4.5.23 16183 1yocA 147 8.99e+01