# List of top-scoring protein chains for T0363.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2d04B 114 2.48e-01 1rwsA 77 3.04e-01 d.15.3.2 97991 2cfeA 162 5.03e-01 1vjkA 98 5.37e-01 d.15.3.1 108631 1wk9A 146 4.46e+00 1wkaA 147 4.49e+00 1frrA 95 4.85e+00 1awd d.15.4.1 37674 1wmzA 140 5.79e+00 d.169.1.1 109422 8i1b 152 6.76e+00 2i1b b.42.1.2 25550 2fgtA 417 7.47e+00 1zba2 218 8.50e+00 1r7sA 106 9.95e+00 d.15.4.1 97207 1xlqA 106 1.02e+01 1pdxA 106 1.04e+01 1ayfA d.15.4.1 37682 1put 106 1.13e+01 1ayfA d.15.4.1 37680 1oqqA 106 1.27e+01 d.15.4.1 93422 1z3aA 168 1.29e+01 1gpx 106 1.30e+01 1ayfA d.15.4.1 37681 1uksA 686 1.51e+01 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 99517,99518,99519,99520 1i7bA 267 1.55e+01 1jenA 2ghiA 260 1.62e+01 1jenA 267 1.64e+01 1jenA 1oedE 260 1.66e+01 f.36.1.1 86915 1u2cA 246 1.67e+01 b.1.6.2,d.272.1.1 107610,107611 1ub0A 258 1.73e+01 c.72.1.2 88394 1jl0A 334 1.82e+01 1jenA d.156.1.1 63155 2bbvA 363 1.87e+01 2bbvA b.121.4.4 23323 2f4pA 147 1.94e+01 1msvA 354 1.97e+01 d.156.1.1 85094 1v4tA 451 2.06e+01 c.55.1.3,c.55.1.3 100311,100312 1v4sA 455 2.08e+01 c.55.1.3,c.55.1.3 100309,100310 1f1uA 323 2.08e+01 d.32.1.3,d.32.1.3 83200,83201 1f1xA 322 2.10e+01 d.32.1.3,d.32.1.3 83208,83209 1d7fA 686 2.14e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21848,22517,27755,28742 1pamA 686 2.14e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21846,22515,27753,28740 1v3jA 686 2.14e+01 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 108305,108306,108307,108308 1v3kA 686 2.15e+01 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 108313,108314,108315,108316 1uktA 686 2.15e+01 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 99525,99526,99527,99528 1q0cA 365 2.17e+01 d.32.1.3,d.32.1.3 88343,88344 1qmjA 132 2.23e+01 1c1lA b.29.1.3 24210 1wf8A 107 2.45e+01 1gaxA 862 2.49e+01 1gaxA b.51.1.1,c.26.1.1,a.2.7.3,a.27.1.1 26893,31595,75842,75843 1qqp2 218 2.67e+01 1qqp2 1dlpA 236 3.15e+01 1b2pA b.78.1.1,b.78.1.1 28000,28001 1d4m3 238 3.39e+01 1aym3 1cii 602 3.56e+01 1cii f.1.1.1,h.4.3.1 43381,45787 1vckA 115 3.60e+01 1wb1A 482 3.71e+01 1tpg 91 3.77e+01 1tpg g.3.11.1,g.27.1.1 44325,44955 2d04A 113 3.77e+01 1tme2 267 3.86e+01 1aym2 1zvtA 256 3.89e+01 1hth 34 3.99e+01 1hth j.15.1.1 46163 1ekeA 230 4.05e+01 1ekeA c.55.3.1 33572 2fcfA 103 4.10e+01 1df9A 191 4.33e+01 1befA b.47.1.3 26420 1befA 181 4.58e+01 1befA b.47.1.3 26419 1pvtA 238 4.78e+01 c.74.1.1 95189 1mt0A 241 4.91e+01 c.37.1.12 85096 1xefA 241 4.94e+01 1vybA 238 5.20e+01 d.151.1.1 108897 2agyA 361 5.24e+01 1tmf2 267 5.52e+01 1aym2 1sj1A 66 5.55e+01 d.58.1.4 105595 2mev2 256 5.69e+01 1aym2 1aq0A 306 6.05e+01 1aq0A c.1.8.3 28842 2cpmA 94 6.20e+01 1fmd2 218 6.38e+01 1qqp2 1zpuA 534 6.52e+01 1bdg 451 6.52e+01 1qhaA c.55.1.3,c.55.1.3 33461,33462 1r8eA 278 6.98e+01 a.6.1.3,d.60.1.1 104843,104844 1ot1A 686 6.98e+01 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 87392,87393,87394,87395 1iwpB 194 7.03e+01 c.51.3.1 76885 1mmfB 194 7.04e+01 c.51.3.1 85019 1cgy 686 7.10e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21823,22492,27730,28717 1e43A 483 7.19e+01 1bli b.71.1.1,c.1.8.1 59217,59218 1dtuA 686 7.28e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21840,22509,27747,28734 1cgv 686 7.35e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21820,22489,27727,28714 1wwkA 307 7.53e+01 1d5gA 96 7.55e+01 b.36.1.1 70080 1eo5A 686 7.57e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21828,22497,27735,28722 1kwiA 101 7.69e+01 d.17.1.3 77564 1ot2A 686 7.70e+01 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 87396,87397,87398,87399 1cdg 686 7.70e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21816,22485,27723,28710 1tcmA 686 7.75e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21833,22502,27740,28727 1d3cA 686 7.81e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21827,22496,27734,28721 1pfpA 105 7.81e+01 d.17.1.3 94656 1cxlA 686 7.86e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21829,22498,27736,28723 1pezA 686 7.91e+01 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 94600,94601,94602,94603 1xmwA 178 7.94e+01 1cgx 686 8.09e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21832,22501,27739,28726 1qcxA 359 8.23e+01 1qcxA b.80.1.2 28028 2gwnA 452 8.28e+01 1yb0A 159 8.28e+01 1e1oA 504 8.29e+01 1lylA b.40.4.1,d.104.1.1 25258,40714 2cb4A 291 8.33e+01 1zkcA 197 8.41e+01 2bcjQ 353 8.85e+01 2cb6A 291 8.86e+01 1vq2A 193 8.95e+01 1b5l 172 8.96e+01 1b5l a.26.1.3 16900