# List of top-scoring protein chains for t06-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1vjkA 98 2.29e-04 d.15.3.1 108631 1xlqA 106 5.05e-03 2bpsA 81 1.07e-02 1oqqA 106 1.41e-02 d.15.4.1 93422 1frrA 95 3.89e-02 1awd d.15.4.1 37674 2bb6A 414 1.54e-01 1zud2 66 1.69e-01 1uwmA 106 2.19e-01 1frd 98 3.08e-01 1awd d.15.4.1 37648 2cu3A 64 4.84e-01 1fm0D 81 5.16e-01 1fmaD d.15.3.1 37642 1yb5A 351 6.25e-01 1awd 94 6.87e-01 1awd d.15.4.1 37673 1vybA 238 8.49e-01 d.151.1.1 108897 2bwfA 77 8.80e-01 1ib8A 164 1.14e+00 b.38.2.1,d.52.4.1 71168,71169 1offA 97 1.20e+00 d.15.4.1 86947 1euvB 86 1.77e+00 1a5r d.15.1.1 37598 1l5pA 93 1.78e+00 d.15.4.1 73598 1c1yB 77 2.03e+00 1c1yB d.15.1.5 37618 1czpA 98 2.20e+00 1awd d.15.4.1 37645 1wgrA 100 2.28e+00 1doi 128 2.31e+00 1awd d.15.4.1 37676 1n8jA 186 2.40e+00 c.47.1.10 85401 1wm3A 72 2.74e+00 1a70 97 3.05e+00 1awd d.15.4.1 37678 2al3A 90 3.40e+00 2a4hA 126 3.44e+00 1yqzA 438 4.33e+00 1ra6A 461 4.45e+00 e.8.1.4 104879 2dafA 118 4.63e+00 2cfeA 162 4.72e+00 2c1vA 338 4.77e+00 1rfkA 98 5.62e+00 1f1xA 322 5.76e+00 d.32.1.3,d.32.1.3 83208,83209 1i7hA 111 5.84e+00 d.15.4.1 71122 1t0qC 86 5.90e+00 d.15.12.1 106222 1zu0A 529 6.13e+00 1ogwA 76 6.46e+00 d.15.1.1 87001 1f1uA 323 6.54e+00 d.32.1.3,d.32.1.3 83200,83201 1yqbA 100 7.31e+00 1yj1A 76 7.33e+00 1r3eA 309 7.36e+00 b.122.1.1,d.265.1.2 96907,96908 1t6aA 126 8.08e+00 d.129.8.1 106555 1lm8B 118 9.11e+00 d.15.1.1 74033 2bt6A 108 9.16e+00 1u3wA 374 9.21e+00 1k07A 263 9.92e+00 d.157.1.1 77218 1wwtA 88 1.01e+01 1t3qA 168 1.15e+01 a.56.1.1,d.15.4.2 106367,106368 1l2hA 153 1.18e+01 b.42.1.2 77655 1wi0A 113 1.22e+01 2gptA 523 1.24e+01 2fcr 173 1.32e+01 1rcf c.23.5.1 31151 1cnzA 363 1.34e+01 1cnzA c.77.1.1 35061 1ws8A 109 1.37e+01 2fnjB 118 1.46e+01 2pia 321 1.47e+01 2pia b.43.4.2,c.25.1.2,d.15.4.2 25663,31553,37704 1krhA 338 1.51e+01 b.43.4.2,c.25.1.2,d.15.4.2 72891,72892,72893 1n8kA 374 1.52e+01 b.35.1.2,c.2.1.1 80298,80299 1knmA 130 1.53e+01 b.42.2.1 72781 2azwA 148 1.66e+01 1mh1 186 1.72e+01 1eesA c.37.1.8 32002 1wfyA 104 1.87e+01 2cyjA 118 1.98e+01 2gk3A 256 2.00e+01 1cxyA 90 2.02e+01 1cyo d.120.1.1 41085 2cr5A 109 2.10e+01 1vc3B 97 2.12e+01 1jl0A 334 2.12e+01 1jenA d.156.1.1 63155 1h4xA 117 2.19e+01 1auz c.13.2.1 60626 1l7yA 94 2.23e+01 d.15.1.6 73676 1jb3A 131 2.30e+01 1jc7A b.40.3.2 62833 2fazA 78 2.37e+01 1lfdA 87 2.39e+01 1lfdA d.15.1.5 37622 1ftrA 296 2.50e+01 1ftrA d.58.33.1,d.58.33.1 39485,39486 2apoA 357 2.58e+01 1dmhA 311 2.79e+01 1dmhA b.3.6.1 22633 2c5lC 117 2.82e+01 1ooyA 481 2.82e+01 c.124.1.3,c.124.1.2 93388,93389 1bbhA 131 2.85e+01 1bbhA a.24.3.2 16546 1z2mA 155 2.86e+01 1dqaA 467 2.88e+01 1dqaA d.58.20.1,d.179.1.1 39364,42585 1dg6A 191 2.89e+01 1d4vB b.22.1.1 23883 1p99A 295 2.93e+01 c.94.1.1 94384 1zbsA 291 2.96e+01 2b5wA 357 2.97e+01 1tygB 87 3.00e+01 d.15.3.2 107455 2f4pA 147 3.02e+01 1wriA 93 3.13e+01 1wkaA 147 3.16e+01 1qh5A 260 3.21e+01 1qh5A d.157.1.2 42057 1woqA 267 3.24e+01 c.55.1.10,c.55.1.10 109462,109463 2a6zA 222 3.38e+01 1k0eA 453 3.48e+01 d.161.1.1 67938 1xuvA 178 3.49e+01 1qfxA 460 3.50e+01 1qfxA c.60.1.2 33994 1xc3A 302 3.52e+01 1efdN 266 3.74e+01 1efdN c.92.2.1 35597 1n62A 166 3.78e+01 a.56.1.1,d.15.4.2 80090,80091 1ip9A 85 3.85e+01 1ip9A d.15.2.2 62638 2bolA 314 3.87e+01 1hc7A 477 3.90e+01 1hc7A c.51.1.1,d.104.1.1,d.68.5.1 60938,60939,60940 1mr3F 181 3.95e+01 c.37.1.8 79422 1ku0A 388 3.98e+01 c.69.1.18 72994 1avbA 226 4.01e+01 1led b.29.1.1 24158 2act 220 4.12e+01 1cs8A d.3.1.1 37002 2c8mA 262 4.18e+01 1iueA 98 4.19e+01 d.15.4.1 90697 1aqzA 149 4.22e+01 1aqzA d.1.1.3 36238 2gupA 292 4.25e+01 1w6vA 141 4.34e+01 1nw1A 429 4.35e+01 d.144.1.8 86286 2h1tA 188 4.49e+01 2go7A 207 4.52e+01 1rm6C 161 4.59e+01 2fmpA 335 4.60e+01 1pzwA 80 4.70e+01 g.39.1.10 95483 1x0rA 249 4.73e+01 1zx8A 136 4.77e+01 1ey4A 149 4.78e+01 1snc b.40.1.1 24815 1udkA 51 5.03e+01 g.3.14.1 99211 1iyjB 817 5.09e+01 a.170.1.1,a.171.1.1,b.40.4.3,b.40.4.3,b.40.4.3 76948,76949,76950,76951,76952 2b0vA 153 5.10e+01 1jx4A 352 5.24e+01 d.240.1.1,e.8.1.7 90378,90379 2ghpA 292 5.31e+01 2ex2A 458 5.42e+01 1ttwA 138 5.45e+01 d.198.1.1 107308 1owfB 94 5.51e+01 a.55.1.1 87488 1xm3A 264 5.57e+01 1k8wA 327 5.65e+01 b.122.1.1,d.265.1.2 83094,90388 1nf3A 195 5.73e+01 c.37.1.8 85594 2sns 149 5.85e+01 1snc b.40.1.1 24860 1v5mA 136 5.87e+01 b.55.1.1 108379 2blnA 305 5.91e+01 1i0rA 169 5.92e+01 1i0rA b.45.1.2 61489 1fiqB 350 5.92e+01 1fiqB d.87.2.1,d.145.1.3 40229,41760 1pvmA 184 6.01e+01 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 1j54A 186 6.03e+01 c.55.3.5 77077 1p4oA 322 6.07e+01 d.144.1.7 87775 1pz7A 204 6.11e+01 b.29.1.4 95405 1l1qA 186 6.18e+01 c.61.1.1 77653 2fb1A 226 6.19e+01 1xe1A 116 6.21e+01 b.43.3.1 109571 1pt6A 213 6.25e+01 c.62.1.1 95091 1xdyA 298 6.32e+01 1wwkA 307 6.35e+01 1pm3A 78 6.63e+01 b.41.1.2 94889 2btzA 394 6.66e+01 1msk 331 6.67e+01 1msk d.173.1.1 42495 1yvhA 329 6.75e+01 2fu0A 160 6.78e+01 1xs0A 136 6.81e+01 1nhs 447 6.95e+01 1nhp c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 1z9zA 60 7.03e+01 1wloA 136 7.07e+01 1ghhA 81 7.17e+01 1ghhA d.57.1.1 38940 2f69A 261 7.19e+01 2ah5A 210 7.23e+01 1wv2A 265 7.26e+01 1p8xA 344 7.40e+01 d.109.1.1,d.109.1.1,d.109.1.1 94365,94366,94367 1xd3A 230 7.42e+01 2fh1A 344 7.52e+01 2ervA 150 7.54e+01 1uuqA 440 7.54e+01 c.1.8.3 100015 1uxy 340 7.60e+01 2mbr d.145.1.2,d.146.1.1 41748,41761 1b9mA 265 7.61e+01 1b9mA a.4.5.8,b.40.6.2,b.40.6.2 16118,58938,58939 1uhgA 385 7.68e+01 e.1.1.1 88491 1xi1A 575 7.72e+01 2fn4A 181 7.82e+01 1yf9A 171 7.91e+01 2d7nA 93 7.95e+01 1vplA 256 7.97e+01 2fsqA 243 7.99e+01 2g7zA 282 7.99e+01 1siqA 392 8.05e+01 a.29.3.1,e.6.1.1 105585,105586 1eejA 216 8.12e+01 1eejA c.47.1.9,d.17.3.1 33057,38071 2fqmA 75 8.14e+01 1zvtA 256 8.18e+01 1yndA 165 8.27e+01 1oruA 195 8.32e+01 b.58.1.2 93464 1ztdA 133 8.34e+01 1vq2A 193 8.38e+01 2bjiA 277 8.39e+01 1wzdA 215 8.45e+01 1iw0A 215 8.45e+01 a.132.1.1 83720 2fm8A 135 8.46e+01 1i2aA 219 8.54e+01 e.24.1.1 90660 1f06A 320 8.54e+01 1dapA c.2.1.3,d.81.1.3 59556,59557 1omzA 293 8.56e+01 c.68.1.15 87093 1yeyA 444 8.60e+01 1uptA 171 8.71e+01 c.37.1.8 99767 2giyA 191 8.73e+01 1y0bA 197 8.84e+01 1vioA 243 8.90e+01 d.265.1.3,d.66.1.5 100762,100763 1ng2A 193 8.92e+01 b.34.2.1,b.34.2.1 85660,85661 2gaxA 135 8.98e+01