# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1vjkA 98 5.54e-04 d.15.3.1 108631 1xlqA 106 6.69e-03 1oqqA 106 6.76e-03 d.15.4.1 93422 1frrA 95 9.24e-02 1awd d.15.4.1 37674 2bb6A 414 2.42e-01 1uwmA 106 2.76e-01 1fm0D 81 4.07e-01 1fmaD d.15.3.1 37642 1frd 98 6.56e-01 1awd d.15.4.1 37648 2bpsA 81 7.28e-01 1vybA 238 1.07e+00 d.151.1.1 108897 1f1xA 322 1.20e+00 d.32.1.3,d.32.1.3 83208,83209 1ib8A 164 1.26e+00 b.38.2.1,d.52.4.1 71168,71169 1nw1A 429 1.30e+00 d.144.1.8 86286 2gupA 292 1.31e+00 1awd 94 1.35e+00 1awd d.15.4.1 37673 1zud2 66 1.66e+00 1wmzA 140 1.83e+00 d.169.1.1 109422 1f1uA 323 2.19e+00 d.32.1.3,d.32.1.3 83200,83201 1xc3A 302 2.21e+00 1l5pA 93 2.39e+00 d.15.4.1 73598 1offA 97 2.56e+00 d.15.4.1 86947 1yb5A 351 2.59e+00 1mh1 186 2.82e+00 1eesA c.37.1.8 32002 1a70 97 3.15e+00 1awd d.15.4.1 37678 2bwfA 77 3.55e+00 1wgrA 100 3.66e+00 1z06A 189 3.97e+00 2cfeA 162 4.16e+00 1czpA 98 4.77e+00 1awd d.15.4.1 37645 2f4pA 147 4.80e+00 1r3eA 309 5.66e+00 b.122.1.1,d.265.1.2 96907,96908 1onrA 316 5.75e+00 1onrA c.1.10.1 29169 1ra6A 461 6.48e+00 e.8.1.4 104879 1lfdA 87 6.95e+00 1lfdA d.15.1.5 37622 1yqzA 438 7.29e+00 1dmhA 311 7.68e+00 1dmhA b.3.6.1 22633 2dafA 118 7.84e+00 1rfkA 98 7.87e+00 1doi 128 8.45e+00 1awd d.15.4.1 37676 2cu3A 64 8.63e+00 1knmA 130 8.94e+00 b.42.2.1 72781 1u3wA 374 9.22e+00 1c1yB 77 9.61e+00 1c1yB d.15.1.5 37618 1l7yA 94 1.01e+01 d.15.1.6 73676 1ng2A 193 1.11e+01 b.34.2.1,b.34.2.1 85660,85661 1l2hA 153 1.23e+01 b.42.1.2 77655 1i7hA 111 1.25e+01 d.15.4.1 71122 1t6aA 126 1.30e+01 d.129.8.1 106555 1dg6A 191 1.31e+01 1d4vB b.22.1.1 23883 1jb3A 131 1.37e+01 1jc7A b.40.3.2 62833 1ftrA 296 1.41e+01 1ftrA d.58.33.1,d.58.33.1 39485,39486 2ap1A 327 1.45e+01 2azwA 148 1.54e+01 1n8kA 374 1.58e+01 b.35.1.2,c.2.1.1 80298,80299 1p5tA 127 1.65e+01 b.55.1.2 94148 1iyjB 817 1.71e+01 a.170.1.1,a.171.1.1,b.40.4.3,b.40.4.3,b.40.4.3 76948,76949,76950,76951,76952 1k07A 263 1.78e+01 d.157.1.1 77218 2fcr 173 1.78e+01 1rcf c.23.5.1 31151 2al3A 90 1.84e+01 2fn4A 181 1.86e+01 1u94A 356 1.98e+01 c.37.1.11,d.48.1.1 107743,107744 2b5wA 357 2.01e+01 1zu0A 529 2.05e+01 2a4vA 159 2.06e+01 1ws8A 109 2.06e+01 1wkaA 147 2.09e+01 2c5lC 117 2.20e+01 1xneA 113 2.31e+01 1euvB 86 2.31e+01 1a5r d.15.1.1 37598 1vq2A 193 2.43e+01 1pt6A 213 2.44e+01 c.62.1.1 95091 1cxyA 90 2.61e+01 1cyo d.120.1.1 41085 1p8xA 344 2.62e+01 d.109.1.1,d.109.1.1,d.109.1.1 94365,94366,94367 2a4hA 126 2.63e+01 2cyjA 118 2.66e+01 1zbsA 291 2.78e+01 1sfe 180 2.84e+01 1sfe a.4.2.1,c.55.7.1 16073,33748 1lm8B 118 2.87e+01 d.15.1.1 74033 1wi0A 113 2.90e+01 2fh1A 344 2.95e+01 1zvtA 256 3.16e+01 2ghpA 292 3.29e+01 1wwtA 88 3.33e+01 1dqaA 467 3.35e+01 1dqaA d.58.20.1,d.179.1.1 39364,42585 2btzA 394 3.38e+01 1dljA 402 3.41e+01 1dliA a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 1msk 331 3.48e+01 1msk d.173.1.1 42495 2ex2A 458 3.49e+01 1ne7A 289 3.52e+01 c.124.1.1 91833 1k47A 337 3.57e+01 d.14.1.5,d.58.26.4 72040,72041 2bolA 314 3.58e+01 1woqA 267 3.59e+01 c.55.1.10,c.55.1.10 109462,109463 1zy4A 303 3.74e+01 2fcfA 103 3.80e+01 1xm3A 264 3.81e+01 1qtnA 164 3.81e+01 1pauA c.17.1.1 30999 1nf3A 195 3.83e+01 c.37.1.8 85594 1jx4A 352 3.95e+01 d.240.1.1,e.8.1.7 90378,90379 2fnjB 118 4.12e+01 1yj1A 76 4.13e+01 1pzwA 80 4.16e+01 g.39.1.10 95483 1kmqA 184 4.18e+01 c.37.1.8 84412 2fmpA 335 4.18e+01 1r31A 428 4.25e+01 d.58.20.1,d.179.1.1 96897,96898 1y9aA 360 4.32e+01 1m93B 245 4.37e+01 1w77A 228 4.43e+01 1pl8A 356 4.48e+01 b.35.1.2,c.2.1.1 94878,94879 1ry9A 145 4.54e+01 d.198.1.1 98094 1so9A 164 4.58e+01 b.146.1.1 105842 1npsA 88 4.80e+01 1prs b.11.1.1 23622 1yj7A 171 4.80e+01 1wwkA 307 4.82e+01 1qysA 106 4.85e+01 k.41.1.1 96603 1wloA 136 4.85e+01 1owfB 94 4.97e+01 a.55.1.1 87488 3pmgA 561 4.98e+01 3pmgA c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 1omzA 293 4.99e+01 c.68.1.15 87093 1udkA 51 5.01e+01 g.3.14.1 99211 2fm8A 135 5.02e+01 1ogwA 76 5.05e+01 d.15.1.1 87001 2cb4A 291 5.08e+01 1fiqB 350 5.09e+01 1fiqB d.87.2.1,d.145.1.3 40229,41760 1t0qC 86 5.22e+01 d.15.12.1 106222 1ooyA 481 5.24e+01 c.124.1.3,c.124.1.2 93388,93389 1p99A 295 5.28e+01 c.94.1.1 94384 1m2oA 768 5.29e+01 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 78480,78481,78482,78483,78484 2c1vA 338 5.30e+01 2apoA 357 5.35e+01 1ryaA 160 5.52e+01 d.113.1.5 105122 1siqA 392 5.55e+01 a.29.3.1,e.6.1.1 105585,105586 2aotA 292 5.59e+01 1nhs 447 5.60e+01 1nhp c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 1jl0A 334 5.61e+01 1jenA d.156.1.1 63155 1jtdB 273 5.69e+01 b.69.5.2 67265 2bmeA 186 5.72e+01 1x8bA 289 5.76e+01 1vioA 243 5.76e+01 d.265.1.3,d.66.1.5 100762,100763 1oc2A 348 5.83e+01 c.2.1.2 92765 1tygB 87 5.86e+01 d.15.3.2 107455 1vf7A 369 5.87e+01 f.46.1.1 108557 1b9mA 265 6.21e+01 1b9mA a.4.5.8,b.40.6.2,b.40.6.2 16118,58938,58939 1xqwA 293 6.26e+01 1zavA 180 6.41e+01 1fjgE 162 6.57e+01 1pkp d.14.1.1,d.50.1.2 37553,38789 2act 220 6.88e+01 1cs8A d.3.1.1 37002 1euwA 152 6.98e+01 1dupA b.85.4.1 28349 2h6dA 276 6.99e+01 1ghhA 81 7.03e+01 1ghhA d.57.1.1 38940 1xi1A 575 7.20e+01 1yqbA 100 7.29e+01 2d7nA 93 7.29e+01 1hbnC 248 7.44e+01 1mroC d.58.31.1 60902 1vr6A 350 7.44e+01 2pia 321 7.51e+01 2pia b.43.4.2,c.25.1.2,d.15.4.2 25663,31553,37704 2gptA 523 7.62e+01 2fexA 188 7.63e+01 2fp4B 395 7.68e+01 1xe1A 116 7.69e+01 b.43.3.1 109571 1vbiA 344 7.70e+01 1xuvA 178 7.89e+01 1qmvA 197 8.00e+01 1qq2A c.47.1.10 33066 1aohA 147 8.00e+01 1aohA b.2.2.2 22401 1qh5A 260 8.18e+01 1qh5A d.157.1.2 42057 2d42A 249 8.18e+01 1agjA 242 8.19e+01 1agjA b.47.1.1 25827 1xs0A 136 8.40e+01 1pvmA 184 8.51e+01 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 2bkdN 134 8.58e+01 1xizA 159 8.61e+01 1hz6A 72 8.65e+01 2ptl d.15.7.1 61429 1e6yC 247 8.67e+01 1mroC d.58.31.1 39441 2fqmA 75 8.67e+01 1f06A 320 8.68e+01 1dapA c.2.1.3,d.81.1.3 59556,59557 1uuqA 440 8.76e+01 c.1.8.3 100015 1aqzA 149 8.95e+01 1aqzA d.1.1.3 36238