# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1vjkA 98 8.54e-03 d.15.3.1 108631 1xlqA 106 1.27e-01 1oqqA 106 1.44e-01 d.15.4.1 93422 1jl0A 334 3.54e-01 1jenA d.156.1.1 63155 1ekeA 230 3.97e-01 1ekeA c.55.3.1 33572 1frrA 95 7.83e-01 1awd d.15.4.1 37674 1uwmA 106 1.52e+00 1fm0D 81 1.59e+00 1fmaD d.15.3.1 37642 1ivzA 132 2.34e+00 d.58.41.1 76863 2fcr 173 2.66e+00 1rcf c.23.5.1 31151 1r8eA 278 5.44e+00 a.6.1.3,d.60.1.1 104843,104844 2f4pA 147 6.11e+00 1f1uA 323 6.12e+00 d.32.1.3,d.32.1.3 83200,83201 2bb6A 414 6.17e+00 1uasA 362 6.54e+00 b.71.1.1,c.1.8.1 88388,88389 1vckA 115 8.45e+00 1tzyC 136 8.70e+00 a.22.1.1 107532 1r85A 379 8.99e+00 c.1.8.3 104839 1vybA 238 9.40e+00 d.151.1.1 108897 2bpsA 81 9.85e+00 1cjaA 342 9.89e+00 1cjaA d.144.1.3 41708 1gnyA 153 1.00e+01 b.18.1.11 65404 1jb3A 131 1.01e+01 1jc7A b.40.3.2 62833 2bkdN 134 1.25e+01 2bkkA 264 1.27e+01 1meqA 23 1.36e+01 j.53.1.1 79036 1dmhA 311 1.40e+01 1dmhA b.3.6.1 22633 1qmvA 197 1.64e+01 1qq2A c.47.1.10 33066 1cnv 299 1.67e+01 1cnv c.1.8.5 28989 1zupA 315 1.69e+01 1ad2 228 1.71e+01 1ad2 e.24.1.1 43353 1vc3B 97 1.75e+01 2f49C 30 1.78e+01 1l5pA 93 1.89e+01 d.15.4.1 73598 1l7yA 94 1.89e+01 d.15.1.6 73676 1wgrA 100 1.95e+01 1qy1A 174 2.08e+01 b.60.1.1 96568 2furA 209 2.17e+01 2cu3A 64 2.18e+01 1f1xA 322 2.38e+01 d.32.1.3,d.32.1.3 83208,83209 2bwfA 77 2.39e+01 2fcfA 103 2.40e+01 2cfeA 162 2.44e+01 1ktbA 405 2.47e+01 b.71.1.1,c.1.8.1 72960,72961 1zkcA 197 2.60e+01 1dljA 402 2.62e+01 1dliA a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 1k07A 263 2.66e+01 d.157.1.1 77218 1r5lA 262 2.71e+01 a.5.3.1,c.13.1.1 97099,97100 1tmxA 293 2.75e+01 1zt3A 80 2.79e+01 1o57A 291 2.85e+01 a.4.5.40,c.61.1.1 92483,92484 1ok0A 74 2.87e+01 b.5.1.1 93191 1tzvA 142 2.95e+01 a.79.1.1 107526 1ejbA 168 2.98e+01 1rvv1 c.16.1.1 59417 1zndA 174 3.02e+01 1uptA 171 3.07e+01 c.37.1.8 99767 1wmzA 140 3.07e+01 d.169.1.1 109422 1euwA 152 3.26e+01 1dupA b.85.4.1 28349 1xc3A 302 3.27e+01 1p99A 295 3.33e+01 c.94.1.1 94384 1zd9A 188 3.39e+01 1cxyA 90 3.52e+01 1cyo d.120.1.1 41085 2iu4A 336 3.56e+01 1rfkA 98 3.57e+01 1j8bA 112 3.62e+01 d.222.1.1 77101 2avuE 192 3.67e+01 2axtI 38 3.72e+01 1i7hA 111 3.74e+01 d.15.4.1 71122 2azwA 148 3.79e+01 2es4D 332 3.81e+01 1ag9A 175 3.86e+01 1rcf c.23.5.1 31178 1y93A 159 3.89e+01 2bbrA 195 3.94e+01 1zvtA 256 4.04e+01 1w6sB 74 4.06e+01 1doi 128 4.10e+01 1awd d.15.4.1 37676 1vl5A 260 4.18e+01 c.66.1.41 108720 1e0nA 27 4.36e+01 b.72.1.1 27807 1xk7A 408 4.38e+01 1aie 31 4.41e+01 1aie a.53.1.1 17829 1sj1A 66 4.44e+01 d.58.1.4 105595 2bjqA 345 4.48e+01 1vzyA 291 4.59e+01 5nul 138 4.68e+01 5nul c.23.5.1 31191 2gm3A 175 4.73e+01 1gq8A 319 4.85e+01 b.80.1.5 70350 1seiA 130 5.03e+01 1seiA d.140.1.1 41463 1ejfA 125 5.09e+01 1ejfA b.15.1.2 23683 1h12A 405 5.14e+01 a.102.1.2 83447 1l2hA 153 5.20e+01 b.42.1.2 77655 2fexA 188 5.33e+01 1frd 98 5.40e+01 1awd d.15.4.1 37648 2fyxA 143 5.47e+01 1k47A 337 5.57e+01 d.14.1.5,d.58.26.4 72040,72041 1hynP 379 5.58e+01 1hynP d.112.1.2 61408 1ccwA 137 5.76e+01 1be1 c.23.6.1 31238 1zh2A 121 5.88e+01 1xe1A 116 6.01e+01 b.43.3.1 109571 1u2cA 246 6.05e+01 b.1.6.2,d.272.1.1 107610,107611 1qkkA 155 6.17e+01 1dbwA c.23.1.1 31104 1gnxA 479 6.33e+01 c.1.8.4 76241 1ys5A 164 6.37e+01 1wwkA 307 6.45e+01 2fb6A 117 6.58e+01 2ck3A 510 6.69e+01 2d0tA 406 6.69e+01 2evaA 307 6.84e+01 1dy9A 187 6.88e+01 1jxpA b.47.1.3 26400 1l4uA 176 7.00e+01 c.37.1.2 73568 1sznA 417 7.07e+01 b.71.1.1,c.1.8.1 106162,106163 1v7bA 185 7.16e+01 1z3qA 200 7.16e+01 1oi2A 366 7.19e+01 c.119.1.2 103802 1feuA 206 7.37e+01 1feuA b.53.1.1 59801 1f1eA 154 7.43e+01 a.22.1.2 64927 1svfB 38 7.43e+01 1svfB h.3.2.1 45764 1w61A 414 7.57e+01 2f5xA 312 7.67e+01 1azsA 220 7.75e+01 1azsA d.58.29.1 39416 2dafA 118 7.76e+01 1xtqA 177 7.91e+01 2gh1A 301 7.93e+01 1wmmA 145 7.99e+01 1oboA 169 8.01e+01 c.23.5.1 86776 1zpsA 138 8.15e+01 1jidA 128 8.15e+01 d.201.1.1 66735 1wyzA 242 8.36e+01 2fxqA 264 8.48e+01 2fclA 169 8.50e+01 1onrA 316 8.60e+01 1onrA c.1.10.1 29169 1agjA 242 8.84e+01 1agjA b.47.1.1 25827 1h0pA 182 8.86e+01 b.62.1.1 76450 1ztdA 133 8.87e+01 1hf2A 210 8.94e+01 1hf2A b.80.3.1,c.102.1.1 60992,60993