# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1vjkA 98 2.47e-03 d.15.3.1 108631 1oqqA 106 2.42e-02 d.15.4.1 93422 1xlqA 106 2.44e-02 1qorA 327 9.30e-02 1qorA b.35.1.2,c.2.1.1 24766,29782 1rwsA 77 1.96e-01 d.15.3.2 97991 1frrA 95 2.29e-01 1awd d.15.4.1 37674 1ryjA 70 3.56e-01 d.15.3.2 98104 2bb6A 414 5.90e-01 1e9mA 106 6.58e-01 1ayfA d.15.4.1 59397 1uwmA 106 6.58e-01 1fm0D 81 8.68e-01 1fmaD d.15.3.1 37642 1frd 98 1.26e+00 1awd d.15.4.1 37648 2aj2A 208 1.53e+00 2bpsA 81 1.81e+00 1o5oA 221 2.06e+00 c.61.1.1 92509 1nw1A 429 2.38e+00 d.144.1.8 86286 1awd 94 2.65e+00 1awd d.15.4.1 37673 2gupA 292 2.82e+00 1ib8A 164 2.83e+00 b.38.2.1,d.52.4.1 71168,71169 1vybA 238 3.34e+00 d.151.1.1 108897 1f1xA 322 3.46e+00 d.32.1.3,d.32.1.3 83208,83209 1wmzA 140 3.47e+00 d.169.1.1 109422 1zud2 66 3.98e+00 1l5pA 93 4.93e+00 d.15.4.1 73598 1offA 97 4.94e+00 d.15.4.1 86947 2bwfA 77 5.51e+00 1xc3A 302 5.57e+00 1mh1 186 5.69e+00 1eesA c.37.1.8 32002 1f1uA 323 5.83e+00 d.32.1.3,d.32.1.3 83200,83201 1a70 97 6.00e+00 1awd d.15.4.1 37678 1z06A 189 6.18e+00 1b9rA 105 6.24e+00 1ayfA d.15.4.1 37683 1yb5A 351 6.61e+00 1wgrA 100 7.13e+00 2cfeA 162 7.56e+00 1wjnA 97 7.66e+00 1czpA 98 8.10e+00 1awd d.15.4.1 37645 2f4pA 147 8.98e+00 1r3eA 309 9.67e+00 b.122.1.1,d.265.1.2 96907,96908 1eb7A 323 1.08e+01 1eb7A a.3.1.5,a.3.1.5 59404,59405 1ra6A 461 1.16e+01 e.8.1.4 104879 1i2oA 316 1.18e+01 1onrA c.1.10.1 61574 1yqzA 438 1.22e+01 1lfdA 87 1.29e+01 1lfdA d.15.1.5 37622 1onrA 316 1.32e+01 1onrA c.1.10.1 29169 1rfkA 98 1.32e+01 1dmhA 311 1.33e+01 1dmhA b.3.6.1 22633 2cu3A 64 1.48e+01 1doi 128 1.52e+01 1awd d.15.4.1 37676 2dafA 118 1.52e+01 1jj2H 167 1.59e+01 1ffkF d.41.4.1 63093 1c1yB 77 1.73e+01 1c1yB d.15.1.5 37618 1knmA 130 1.85e+01 b.42.2.1 72781 1l7yA 94 1.93e+01 d.15.1.6 73676 1mgpA 313 1.95e+01 c.119.1.1 79098 1d2eA 397 1.96e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25701,25741,32136 2ap1A 327 2.07e+01 1t6aA 126 2.11e+01 d.129.8.1 106555 1ng2A 193 2.13e+01 b.34.2.1,b.34.2.1 85660,85661 1i7hA 111 2.19e+01 d.15.4.1 71122 1u3wA 374 2.20e+01 2i1b 153 2.22e+01 2i1b b.42.1.2 25538 1p5tA 127 2.42e+01 b.55.1.2 94148 1l2hA 153 2.43e+01 b.42.1.2 77655 2azwA 148 2.46e+01 1ftrA 296 2.52e+01 1ftrA d.58.33.1,d.58.33.1 39485,39486 1dg6A 191 2.53e+01 1d4vB b.22.1.1 23883 2fcr 173 2.59e+01 1rcf c.23.5.1 31151 1zu0A 529 2.64e+01 1wkaA 147 2.65e+01 2fn4A 181 2.69e+01 1zpuA 534 2.69e+01 2a4vA 159 2.80e+01 2c2hA 192 2.92e+01 1b1cA 181 2.93e+01 1amoA c.23.5.2 31212 2al3A 90 2.98e+01 1jb3A 131 3.08e+01 1jc7A b.40.3.2 62833 1rdr 461 3.11e+01 1rdr e.8.1.4 43116 1k07A 263 3.16e+01 d.157.1.1 77218 1prs 173 3.36e+01 1prs b.11.1.1,b.11.1.1 23625,23626 1jenA 267 3.38e+01 1jenA 2c5lC 117 3.40e+01 1iyjB 817 3.57e+01 a.170.1.1,a.171.1.1,b.40.4.3,b.40.4.3,b.40.4.3 76948,76949,76950,76951,76952 2ohxA 374 3.63e+01 2ohxA b.35.1.2,c.2.1.1 24669,29685 1n8kA 374 3.66e+01 b.35.1.2,c.2.1.1 80298,80299 1hetA 374 3.67e+01 2ohxA b.35.1.2,c.2.1.1 60975,60976 1u94A 356 3.69e+01 c.37.1.11,d.48.1.1 107743,107744 1ws8A 109 3.72e+01 1euvB 86 3.75e+01 1a5r d.15.1.1 37598 1xneA 113 3.88e+01 2b5wA 357 3.90e+01 2reb 352 3.92e+01 2reb c.37.1.11,d.48.1.1 32282,38767 1pt6A 213 4.14e+01 c.62.1.1 95091 1p8xA 344 4.26e+01 d.109.1.1,d.109.1.1,d.109.1.1 94365,94366,94367 1lm8B 118 4.29e+01 d.15.1.1 74033 1cf2O 337 4.46e+01 1b7gO c.2.1.3,d.81.1.1 29994,39909 1vcbA 118 4.47e+01 1vcbA d.15.1.1 37603 2cyjA 118 4.56e+01 1vq2A 193 4.58e+01 1qc5A 192 4.60e+01 1aoxA c.62.1.1 34147 1msk 331 4.60e+01 1msk d.173.1.1 42495 1cxyA 90 4.65e+01 1cyo d.120.1.1 41085 2fh1A 344 4.73e+01 2a4hA 126 4.76e+01 1wwtA 88 4.86e+01 1woqA 267 5.03e+01 c.55.1.10,c.55.1.10 109462,109463 1nbfD 76 5.07e+01 d.15.1.1 80390 2ex2A 458 5.08e+01 1sfe 180 5.12e+01 1sfe a.4.2.1,c.55.7.1 16073,33748 1d9tA 289 5.14e+01 1deaA 1wi0A 113 5.18e+01 2ghpA 292 5.27e+01 1se9A 126 5.31e+01 d.15.1.1 98821 1ne7A 289 5.35e+01 c.124.1.1 91833 1yj1A 76 5.42e+01 2atxA 194 5.50e+01 1jqbA 351 5.71e+01 b.35.1.2,c.2.1.1 77151,77152 1zvtA 256 5.73e+01 1xm3A 264 5.74e+01 1dqaA 467 5.87e+01 1dqaA d.58.20.1,d.179.1.1 39364,42585 2fnjB 118 5.90e+01 1zy4A 303 5.91e+01 1sg1X 161 5.92e+01 g.24.1.1,g.24.1.1,g.24.1.1,g.24.1.1 105515,105516,105517,105518 1qtnA 164 5.95e+01 1pauA c.17.1.1 30999 1kmqA 184 6.05e+01 c.37.1.8 84412 2fcfA 103 6.13e+01 1zbsA 291 6.18e+01 1k47A 337 6.27e+01 d.14.1.5,d.58.26.4 72040,72041 1yj7A 171 6.29e+01 1uh6A 100 6.34e+01 d.15.1.1 99394 1nf3A 195 6.38e+01 c.37.1.8 85594 2btzA 394 6.41e+01 1jx4A 352 6.44e+01 d.240.1.1,e.8.1.7 90378,90379 1pzwA 80 6.61e+01 g.39.1.10 95483 1dljA 402 6.62e+01 1dliA a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 1ryaA 160 6.64e+01 d.113.1.5 105122 1fiqB 350 6.77e+01 1fiqB d.87.2.1,d.145.1.3 40229,41760 2bolA 314 6.85e+01 1kevA 351 6.92e+01 1pedA b.35.1.2,c.2.1.1 24749,29765 1qysA 106 6.97e+01 k.41.1.1 96603 1ogwA 76 7.02e+01 d.15.1.1 87001 1ubi 76 7.02e+01 1ubi d.15.1.1 37584 1wwkA 307 7.06e+01 1npsA 88 7.14e+01 1prs b.11.1.1 23622 1pl8A 356 7.16e+01 b.35.1.2,c.2.1.1 94878,94879 1so9A 164 7.17e+01 b.146.1.1 105842 1fsz 372 7.17e+01 1fsz c.32.1.1,d.79.2.1 31750,39802 1x8bA 289 7.43e+01 1y9aA 360 7.53e+01 1w77A 228 7.58e+01 1jl0A 334 7.62e+01 1jenA d.156.1.1 63155 1b4rA 80 7.67e+01 1b4rA b.1.3.1 22072 1m93B 245 7.75e+01 1vioA 243 7.76e+01 d.265.1.3,d.66.1.5 100762,100763 1ubeA 349 7.79e+01 c.37.1.11,d.48.1.1 88412,88413 2cb4A 291 7.79e+01 1pvc3 238 7.83e+01 1aym3 2fmpA 335 7.89e+01 1fvrA 327 8.08e+01 d.144.1.7 60047 1s0uA 408 8.12e+01 b.43.3.1,b.44.1.1,c.37.1.8 98302,98303,98304 1ry9A 145 8.13e+01 d.198.1.1 98094 3pmgA 561 8.14e+01 3pmgA c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 1omzA 293 8.15e+01 c.68.1.15 87093 1ooyA 481 8.15e+01 c.124.1.3,c.124.1.2 93388,93389 1owfB 94 8.16e+01 a.55.1.1 87488 1t0qC 86 8.23e+01 d.15.12.1 106222 1xqwA 293 8.25e+01 2apoA 357 8.25e+01 2fm8A 135 8.30e+01 1jqeA 292 8.37e+01 c.66.1.19 71789 2aotA 292 8.46e+01 1nhs 447 8.52e+01 1nhp c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 1m2oA 768 8.52e+01 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 78480,78481,78482,78483,78484 1jtdB 273 8.65e+01 b.69.5.2 67265 1f0cA 305 8.70e+01 1c8oA e.1.1.1 42676 1r4aA 165 8.72e+01 c.37.1.8 96986 2a9kA 187 8.75e+01 1wloA 136 8.77e+01 1r31A 428 8.88e+01 d.58.20.1,d.179.1.1 96897,96898 1vf7A 369 8.91e+01 f.46.1.1 108557