# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1vjkA 98 1.59e-02 d.15.3.1 108631 1xlqA 106 1.13e-01 1oqqA 106 1.19e-01 d.15.4.1 93422 1rwsA 77 1.71e-01 d.15.3.2 97991 1ekeA 230 8.02e-01 1ekeA c.55.3.1 33572 1frrA 95 9.61e-01 1awd d.15.4.1 37674 1uwmA 106 1.26e+00 1e9mA 106 1.45e+00 1ayfA d.15.4.1 59397 2bb6A 414 1.99e+00 1ivzA 132 2.94e+00 d.58.41.1 76863 1b9rA 105 2.97e+00 1ayfA d.15.4.1 37683 1jenA 267 3.63e+00 1jenA 1jl0A 334 4.54e+00 1jenA d.156.1.1 63155 2f4pA 147 6.22e+00 1fm0D 81 6.64e+00 1fmaD d.15.3.1 37642 2fcr 173 7.52e+00 1rcf c.23.5.1 31151 1l7yA 94 7.84e+00 d.15.1.6 73676 1wjnA 97 1.16e+01 1r8eA 278 1.26e+01 a.6.1.3,d.60.1.1 104843,104844 2bbvA 363 1.29e+01 2bbvA b.121.4.4 23323 2bopA 85 1.30e+01 2bopA d.58.8.1 39217 1wgrA 100 1.31e+01 2fexA 188 1.44e+01 1l5pA 93 1.54e+01 d.15.4.1 73598 1zupA 315 1.60e+01 1uasA 362 1.67e+01 b.71.1.1,c.1.8.1 88388,88389 2bpsA 81 1.67e+01 1rfkA 98 1.79e+01 1ok0A 74 1.88e+01 b.5.1.1 93191 1vckA 115 2.09e+01 1f1uA 323 2.10e+01 d.32.1.3,d.32.1.3 83200,83201 1befA 181 2.15e+01 1befA b.47.1.3 26419 1vybA 238 2.17e+01 d.151.1.1 108897 2bwfA 77 2.20e+01 1cjaA 342 2.22e+01 1cjaA d.144.1.3 41708 1hoe 74 2.32e+01 1hoe b.5.1.1 22833 1hq3C 136 2.66e+01 1aoiA a.22.1.1 16454 1tzyC 136 2.67e+01 a.22.1.1 107532 1jb3A 131 2.74e+01 1jc7A b.40.3.2 62833 1ad2 228 2.82e+01 1ad2 e.24.1.1 43353 1i7hA 111 2.89e+01 d.15.4.1 71122 2bkkA 264 2.91e+01 1meqA 23 3.00e+01 j.53.1.1 79036 1jk3A 158 3.20e+01 d.92.1.11 66790 1dmhA 311 3.28e+01 1dmhA b.3.6.1 22633 1gnyA 153 3.41e+01 b.18.1.11 65404 1r5lA 262 3.53e+01 a.5.3.1,c.13.1.1 97099,97100 2cfeA 162 3.54e+01 2d0tA 406 3.56e+01 1ryjA 70 3.61e+01 d.15.3.2 98104 2fcfA 103 3.66e+01 1i06A 180 3.69e+01 1mup b.60.1.1 27131 1xwiA 322 3.71e+01 1r85A 379 3.75e+01 c.1.8.3 104839 2aj6A 159 3.77e+01 1k07A 263 3.77e+01 d.157.1.1 77218 1y93A 159 3.82e+01 1uptC 170 3.83e+01 c.37.1.8 99769 1mup 166 3.86e+01 1mup b.60.1.1 27133 1ktbA 405 4.09e+01 b.71.1.1,c.1.8.1 72960,72961 2f49C 30 4.14e+01 1jv4A 162 4.17e+01 b.60.1.1 67343 1i05A 180 4.18e+01 1mup b.60.1.1 27130 2dafA 118 4.23e+01 1frd 98 4.26e+01 1awd d.15.4.1 37648 1p99A 295 4.30e+01 c.94.1.1 94384 2bkdN 134 4.30e+01 1vzyA 291 4.43e+01 1doi 128 4.46e+01 1awd d.15.4.1 37676 1qy1A 174 4.48e+01 b.60.1.1 96568 1euwA 152 4.52e+01 1dupA b.85.4.1 28349 2avuE 192 4.59e+01 1kwiA 101 5.00e+01 d.17.1.3 77564 1tzvA 142 5.28e+01 a.79.1.1 107526 1u2cA 246 5.35e+01 b.1.6.2,d.272.1.1 107610,107611 1f1xA 322 5.44e+01 d.32.1.3,d.32.1.3 83208,83209 1qfoA 119 5.45e+01 1qfoA b.1.1.1 19708 1txyA 104 5.51e+01 1vc3B 97 5.56e+01 1k47A 337 5.68e+01 d.14.1.5,d.58.26.4 72040,72041 1czpA 98 5.69e+01 1awd d.15.4.1 37645 1qmvA 197 5.86e+01 1qq2A c.47.1.10 33066 1xw2A 405 5.90e+01 1se8A 301 5.91e+01 b.40.4.3 105448 1qkkA 155 6.14e+01 1dbwA c.23.1.1 31104 1zndA 174 6.29e+01 1seiA 130 6.42e+01 1seiA d.140.1.1 41463 1w77A 228 6.46e+01 1zh2A 121 6.46e+01 1o57A 291 6.51e+01 a.4.5.40,c.61.1.1 92483,92484 2furA 209 6.60e+01 1zkcA 197 6.60e+01 1h12A 405 6.66e+01 a.102.1.2 83447 1dljA 402 6.67e+01 1dliA a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 1offA 97 6.73e+01 d.15.4.1 86947 1t5eA 360 6.86e+01 f.46.1.1 106436 1r4aA 165 6.90e+01 c.37.1.8 96986 1wocA 103 6.95e+01 1zt3A 80 7.00e+01 1w6sB 74 7.12e+01 1aie 31 7.40e+01 1aie a.53.1.1 17829 1sg1X 161 7.40e+01 g.24.1.1,g.24.1.1,g.24.1.1,g.24.1.1 105515,105516,105517,105518 1xwtA 405 7.42e+01 1yarH 217 7.50e+01 1gnxA 479 7.50e+01 c.1.8.4 76241 1u5tB 169 7.51e+01 a.4.5.54,a.4.5.54 107686,107687 1g5cA 170 7.78e+01 1g5cA c.53.2.1 60264 2axtI 38 8.07e+01 1miuA 738 8.09e+01 a.170.1.1,a.171.1.1,b.40.4.3,b.40.4.3,b.40.4.3 79153,79154,79155,79156,79157 1s5lZ 62 8.13e+01 1s5lI 38 8.17e+01 1uptA 171 8.21e+01 c.37.1.8 99767 2axtZ 62 8.30e+01 1e79A 510 8.34e+01 1skyB a.69.1.1,b.49.1.1,c.37.1.11 18269,26434,32314 1ag9A 175 8.45e+01 1rcf c.23.5.1 31178 1f0cA 305 8.46e+01 1c8oA e.1.1.1 42676 2ck3A 510 8.48e+01 2cu3A 64 8.50e+01 1cnv 299 8.70e+01 1cnv c.1.8.5 28989 1rm8A 169 8.87e+01 d.92.1.11 97660