# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2cyeA 133 4.80e-15 1s5uA 138 2.55e-14 d.38.1.1 98573 1z54A 132 1.61e-13 2aliA 158 8.47e-12 2gf6A 135 1.15e-11 1yliA 153 2.64e-11 1vpmA 169 3.11e-10 1lo7A 141 3.93e-10 d.38.1.1 74144 2essA 248 6.04e-09 2gvhA 288 1.58e-08 2h4uA 145 4.23e-06 1j1yA 136 6.07e-05 d.38.1.5 90776 1wluA 136 6.66e-05 1ixlA 131 8.97e-05 d.38.1.5 90717 2fs2A 151 1.19e-04 1zkiA 133 2.01e-04 2b3nA 159 6.00e-04 1iq6A 134 8.91e-04 d.38.1.4 76755 2cwzA 141 5.44e-03 1c8uA 285 7.46e-03 1c8uA d.38.1.3,d.38.1.3 38547,38548 1q4uA 151 1.13e-02 d.38.1.5 95828 1o0iA 138 1.14e-02 d.38.1.5 86532 1z6bA 154 4.56e-02 1t82A 155 9.53e-02 d.38.1.5 106639 1vh5A 148 1.21e-01 d.38.1.5 100642 2bi0A 337 2.54e-01 1sh8A 154 1.21e+00 d.38.1.5 105549 1d3yA 301 2.68e+00 1d3yA e.12.1.1 43252 1zxkA 98 5.56e+00 1nlbH 218 5.73e+00 b.1.1.1,b.1.1.2 80621,80622 1u7kA 131 6.14e+00 1mvlA 209 6.34e+00 c.34.1.1 85146 1tbuA 118 6.79e+00 1vjzA 341 7.01e+00 c.1.8.3 100838 1u09A 476 9.00e+00 e.8.1.4 107545 1te5A 257 9.46e+00 d.153.1.1 106795 1vhoA 346 1.08e+01 b.49.3.1,c.56.5.4 100694,100695 1txqA 93 1.18e+01 1yoeA 322 1.39e+01 8fabA 212 1.47e+01 8fabA b.1.1.1,b.1.1.2 19772,20882 2aioA 269 1.64e+01 1ox0A 430 1.67e+01 c.95.1.1,c.95.1.1 87495,87496 1q1aA 289 1.69e+01 c.31.1.5 95561 1t4wA 196 1.74e+01 b.2.5.2 106427 1wmhA 89 1.76e+01 1whnA 128 1.85e+01 1qfoA 119 1.92e+01 1qfoA b.1.1.1 19708 1yocA 147 1.93e+01 1fnd 314 2.07e+01 1fnc b.43.4.2,c.25.1.1 25626,31516 1tuoA 464 2.22e+01 2a72A 146 2.27e+01 3fib 249 2.28e+01 3fib d.171.1.1 42455 2bm3A 166 2.37e+01 1i4wA 353 2.53e+01 c.66.1.24 66028 1iqzA 81 2.59e+01 d.58.1.4 66281 1n0wB 35 2.74e+01 j.97.1.1 79773 1mxmA 254 2.78e+01 b.38.1.3,d.58.43.1,f.34.1.1 79647,79648,79649 2b8tA 223 2.89e+01 1jykA 254 2.91e+01 c.68.1.13 67458 1pn2A 280 2.97e+01 d.38.1.4,d.38.1.4 94930,94931 2f4lA 297 3.02e+01 1xx6A 191 3.15e+01 1bx1A 314 3.18e+01 1fnc b.43.4.2,c.25.1.1 25629,31519 1wdyA 285 3.19e+01 2c0rA 362 3.21e+01 1j5uA 136 3.33e+01 d.208.1.1 71584 1wdtA 665 3.47e+01 1vjqA 79 3.48e+01 k.43.1.1 100830 1ut9A 609 3.48e+01 a.102.1.2,b.1.18.2 99912,99913 2ct9A 208 3.52e+01 1axh 37 3.58e+01 1axh g.3.6.2 44109 1d4oA 184 3.69e+01 1d4oA c.31.1.4 31748 1qftA 175 3.70e+01 1qftA b.60.1.1 27151 1smoA 119 3.74e+01 b.1.1.1 105764 1omrA 201 3.89e+01 a.39.1.5 93349 1vr5A 547 3.99e+01 2aieP 203 4.07e+01 1k7hA 476 4.07e+01 c.76.1.1 72101 1ne8A 117 4.07e+01 b.34.6.2 80424 1gj7B 253 4.11e+01 2booA 247 4.29e+01 1f3mA 80 4.30e+01 1f3mA j.66.1.1 46358 2c5rA 67 4.42e+01 1n8vA 112 4.60e+01 a.118.21.1 85457 1m3sA 186 4.85e+01 c.80.1.3 78573 1xyiA 66 4.91e+01 2b06A 155 5.02e+01 1g7nA 131 5.03e+01 b.60.1.2 83274 1f8rA 498 5.39e+01 1f8rA c.3.1.2,d.16.1.5 30410,37974 1wf3A 301 5.45e+01 1cmcA 104 5.51e+01 1cmbA a.43.1.5 17462 1mjuL 219 5.61e+01 b.1.1.1,b.1.1.2 91304,91305 1kt6A 183 5.63e+01 b.60.1.1 84466 1h5uA 842 5.86e+01 1a8i c.87.1.4 60655 1wzdA 215 5.92e+01 1vemA 516 5.97e+01 1q74A 303 6.04e+01 c.134.1.1 96019 1rz1A 161 6.05e+01 b.45.1.2 98124 1k66A 149 6.16e+01 c.23.1.1 90941 1js8A 394 6.16e+01 a.86.1.1,b.112.1.1 67219,67220 1zjjA 263 6.18e+01 1nnxA 109 6.23e+01 b.40.10.1 92013 1a8q 274 6.37e+01 1brt c.69.1.12 34702 1pp7U 131 6.57e+01 a.4.5.44 94973 1j6oA 268 6.58e+01 c.1.9.12 77088 1txkA 498 6.60e+01 b.1.18.2,b.30.5.9 107425,107426 2bjqA 345 6.70e+01 2bwqA 129 6.71e+01 1hg7A 66 6.75e+01 1msi b.85.1.1 28280 1iw0A 215 6.82e+01 a.132.1.1 83720 1rzfL 213 6.92e+01 b.1.1.1,b.1.1.2 98152,98153 1aohA 147 6.92e+01 1aohA b.2.2.2 22401 2b7uA 257 7.01e+01 1fjgS 93 7.11e+01 1qkfA d.28.1.1 38451 1j8uA 325 7.11e+01 d.178.1.1 71611 2fblA 153 7.12e+01 1yq2A 1024 7.12e+01 1jkoC 52 7.14e+01 a.4.1.2 66809 1rcqA 357 7.21e+01 b.49.2.2,c.1.6.1 104882,104883 1z2iA 358 7.38e+01 1k78A 149 7.40e+01 a.4.1.5,a.4.1.5 68255,68256 1lm4A 194 7.42e+01 d.167.1.1 84626 1hr0W 71 7.45e+01 1ah9 b.40.4.5 25329 2glfA 450 7.54e+01 1gtzA 156 7.56e+01 c.23.13.1 70539 1qkmA 255 7.65e+01 3erdA a.123.1.1 19309 1npsA 88 7.66e+01 1prs b.11.1.1 23622 1to6A 371 7.67e+01 c.141.1.1 107170 1gsoA 431 7.67e+01 1gsoA b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 1lc5A 364 7.68e+01 c.67.1.1 73827 1jeoA 180 7.79e+01 c.80.1.3 66611 1hnjA 317 7.94e+01 1hn9A c.95.1.2,c.95.1.2 35969,35970 1gqeA 365 8.01e+01 e.38.1.1 70351 1n4xH 120 8.03e+01 b.1.1.1 85324 1vlpA 441 8.08e+01 d.41.2.2,d.41.2.3 108840,108841 1hkhA 279 8.16e+01 c.69.1.12 90628 1avyA 74 8.16e+01 1avyB h.1.17.1 45656 1auk 489 8.16e+01 1auk c.76.1.2 35030 1gai 472 8.18e+01 1ayx a.102.1.1 18819 1uhnA 189 8.25e+01 a.39.1.5 99399 1i3zA 103 8.46e+01 d.93.1.1 83667 1szqA 483 8.61e+01 e.44.1.1 99045 1ueoA 63 8.63e+01 j.107.1.1 99269 1m3wA 32 8.64e+01 k.8.1.1 78575 1mbmA 198 8.68e+01 b.47.1.3 78916 1sx5A 244 8.83e+01 c.52.1.2 99023 1e8yA 966 8.86e+01 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19152,23187,37635,41715 2f4pA 147 8.88e+01 2as0A 396 8.92e+01 1zvnA 99 8.99e+01