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Sequence Alignment and Modeling Software System
http://www.soe.ucsc.edu/research/compbio/sam.html

Citations (SAM, SAM-T99, HMMs)

Sequence numbers correspond to the following labels:

    • T0362 FG7396A, Prochlorococcus marinus str. MIT 9313, 151 res
    • gi|6048397|gb|AAF02215.1|_128:278 palmitoyl-acyl carrier protein thioesterase [Gossypium hirsutum]
    • gi|8469220|sp|Q9SQI3|FATB_GOSHI Myristoyl-acyl carrier protein thioesterase, chloroplast precursor (16:0-acyl-carrier protein thioesterase) (16:0-ACP thioesterase) (Acyl-[acyl-carrier protein] hydrolase) (PATE) [Taxonomy]
    • gi|88192692|pdb|2CYE|D_1:132 Chain D, Crystal Structure Of Thioesterase Complexed With Coenzyme A And Zn From Thermus Thermophilus Hb8 [Taxonomy]
    • gi|88192691|pdb|2CYE|C Chain C, Crystal Structure Of Thioesterase Complexed With Coenzyme A And Zn From Thermus Thermophilus Hb8 [Taxonomy]
    • gi|88192690|pdb|2CYE|B Chain B, Crystal Structure Of Thioesterase Complexed With Coenzyme A And Zn From Thermus Thermophilus Hb8 [Taxonomy]
    • gi|88192689|pdb|2CYE|A Chain A, Crystal Structure Of Thioesterase Complexed With Coenzyme A And Zn From Thermus Thermophilus Hb8 [Taxonomy]
    • gi|68209047|ref|ZP_00561116.1|_1:141 4-hydroxybenzoyl-CoA thioesterase [Desulfitobacterium hafniense DCB-2]
    • gi|68167062|gb|EAM95079.1| 4-hydroxybenzoyl-CoA thioesterase [Desulfitobacterium hafniense DCB-2]
    • gi|8469217|sp|Q39513|FATB_CUPHO_132:282 Myristoyl-acyl carrier protein thioesterase, chloroplast precursor (16:0-acyl-carrier protein thioesterase) (16:0-ACP thioesterase) (Acyl-[acyl-carrier protein] hydrolase) (PATE) [Taxonomy]
    • gi|758701|gb|AAC48990.1| 16:0-ACP thioesterase preprotein [Taxonomy]
    • gi|49258898|pdb|1S5U|H_3:136 Chain H, Crystal Structure Of Hypothetical Protein Ec709 From Escherichia Coli [Taxonomy]
    • gi|49258897|pdb|1S5U|G Chain G, Crystal Structure Of Hypothetical Protein Ec709 From Escherichia Coli [Taxonomy]
    • gi|49258896|pdb|1S5U|F Chain F, Crystal Structure Of Hypothetical Protein Ec709 From Escherichia Coli [Taxonomy]
    • gi|49258895|pdb|1S5U|E Chain E, Crystal Structure Of Hypothetical Protein Ec709 From Escherichia Coli [Taxonomy]
    • gi|49258894|pdb|1S5U|D Chain D, Crystal Structure Of Hypothetical Protein Ec709 From Escherichia Coli [Taxonomy]
    • gi|49258893|pdb|1S5U|C Chain C, Crystal Structure Of Hypothetical Protein Ec709 From Escherichia Coli [Taxonomy]
    • gi|49258892|pdb|1S5U|B Chain B, Crystal Structure Of Hypothetical Protein Ec709 From Escherichia Coli [Taxonomy]
    • gi|49258891|pdb|1S5U|A Chain A, Crystal Structure Of Hypothetical Protein Ec709 From Escherichia Coli [Taxonomy]
    • gi|82407926|pdb|2AV9|L_8:142 Chain L, Crystal Structure Of The Conserved Hypothetical Protein Pa5185 From Pseudomonas Aeruginosa Strain Pao1 [Taxonomy]
    • gi|82407925|pdb|2AV9|K Chain K, Crystal Structure Of The Conserved Hypothetical Protein Pa5185 From Pseudomonas Aeruginosa Strain Pao1 [Taxonomy]
    • gi|82407924|pdb|2AV9|J Chain J, Crystal Structure Of The Conserved Hypothetical Protein Pa5185 From Pseudomonas Aeruginosa Strain Pao1 [Taxonomy]
    • gi|82407923|pdb|2AV9|I Chain I, Crystal Structure Of The Conserved Hypothetical Protein Pa5185 From Pseudomonas Aeruginosa Strain Pao1 [Taxonomy]
    • gi|82407922|pdb|2AV9|H Chain H, Crystal Structure Of The Conserved Hypothetical Protein Pa5185 From Pseudomonas Aeruginosa Strain Pao1 [Taxonomy]
    • gi|82407921|pdb|2AV9|G Chain G, Crystal Structure Of The Conserved Hypothetical Protein Pa5185 From Pseudomonas Aeruginosa Strain Pao1 [Taxonomy]
    • gi|82407920|pdb|2AV9|F Chain F, Crystal Structure Of The Conserved Hypothetical Protein Pa5185 From Pseudomonas Aeruginosa Strain Pao1 [Taxonomy]
    • gi|82407919|pdb|2AV9|E Chain E, Crystal Structure Of The Conserved Hypothetical Protein Pa5185 From Pseudomonas Aeruginosa Strain Pao1 [Taxonomy]
    • gi|82407918|pdb|2AV9|D Chain D, Crystal Structure Of The Conserved Hypothetical Protein Pa5185 From Pseudomonas Aeruginosa Strain Pao1 [Taxonomy]
    • gi|82407917|pdb|2AV9|C Chain C, Crystal Structure Of The Conserved Hypothetical Protein Pa5185 From Pseudomonas Aeruginosa Strain Pao1 [Taxonomy]
    • gi|82407916|pdb|2AV9|B Chain B, Crystal Structure Of The Conserved Hypothetical Protein Pa5185 From Pseudomonas Aeruginosa Strain Pao1 [Taxonomy]
    • gi|82407915|pdb|2AV9|A Chain A, Crystal Structure Of The Conserved Hypothetical Protein Pa5185 From Pseudomonas Aeruginosa Strain Pao1 [Taxonomy]
    • gi|33357469|pdb|1NJK|D_17:155 Chain D, Crystal Structure Of Escherichia Coli Hypothetical Protein Ybaw [Taxonomy]
    • gi|33357468|pdb|1NJK|C Chain C, Crystal Structure Of Escherichia Coli Hypothetical Protein Ybaw [Taxonomy]
    • gi|33357467|pdb|1NJK|B Chain B, Crystal Structure Of Escherichia Coli Hypothetical Protein Ybaw [Taxonomy]
    • gi|33357466|pdb|1NJK|A Chain A, Crystal Structure Of Escherichia Coli Hypothetical Protein Ybaw [Taxonomy]
    • gi|8469219|sp|Q42712|FATA_CORSA_77:216 Oleoyl-acyl carrier protein thioesterase, chloroplast precursor (18:0-acyl-carrier protein thioesterase) (18:0-ACP thioesterase) (Acyl-[acyl-carrier protein] hydrolase) [Taxonomy]
    • gi|511497|gb|AAA19864.1| oleoyl-acyl carrier protein thioesterase [Taxonomy]
    • gi|60594418|pdb|1YLI|B_11:152 Chain B, Structure Of Hi0827, A Thioesterase Acting On Short-Chain Acyl-Coa Compounds [Taxonomy]
    • gi|60594417|pdb|1YLI|A Chain A, Structure Of Hi0827, A Thioesterase Acting On Short-Chain Acyl-Coa Compounds [Taxonomy]
    • gi|1063246|dbj|BAA11257.1|_10:147 low homology to P14 protein of Heamophilus influenzar and 14.2 kDa protein of Escherichia coli [Bacillus subtilis]
    • gi|404026|gb|AAA33019.1|_94:233 oleoyl-acyl carrier protein thioesterase [Taxonomy]
    • gi|76792195|ref|ZP_00774697.1|_1:130 Thioesterase superfamily [Pseudoalteromonas atlantica T6c]
    • gi|76592626|gb|EAO68814.1| Thioesterase superfamily [Pseudoalteromonas atlantica T6c]
    • gi|76794468|ref|ZP_00776936.1|_14:155 Thioesterase superfamily [Pseudoalteromonas atlantica T6c]
    • gi|76590224|gb|EAO66446.1| Thioesterase superfamily [Pseudoalteromonas atlantica T6c]
    • gi|76793813|ref|ZP_00776294.1|_9:140 Thioesterase superfamily [Pseudoalteromonas atlantica T6c]
    • gi|76590866|gb|EAO67075.1| Thioesterase superfamily [Pseudoalteromonas atlantica T6c]
    • gi|76794104|ref|ZP_00776580.1|_10:151 conserved hypothetical protein [Pseudoalteromonas atlantica T6c]
    • gi|76590616|gb|EAO66830.1| conserved hypothetical protein [Pseudoalteromonas atlantica T6c]
    • gi|76637495|ref|XP_879984.1|_106:252 PREDICTED: similar to Cytosolic acyl coenzyme A thioester hydrolase (Long chain acyl-CoA thioester hydrolase) (CTE-II) (CTE-IIa) (Brain acyl-CoA hydrolase) isoform 3 [Bos taurus]
    • gi|85681911|sp|Q64559|BACH_RAT_233:364 Cytosolic acyl coenzyme A thioester hydrolase (Long chain acyl-CoA thioester hydrolase) (CTE-II) (CTE-IIa) (Brain acyl-CoA hydrolase) (ACT) (CTE-IIb) (LACH1) (MTE-II) (ACH1) (Acyl-CoA thioesterase 7) [Taxonomy]
    • gi|23495557|dbj|BAC20217.1|_233:364 acyl-CoA hydrolase [Mus musculus]
    • gi|28376965|sp|Q91V12|BACH_MOUSE Cytosolic acyl coenzyme A thioester hydrolase (Long chain acyl-CoA thioester hydrolase) (CTE-II) (CTE-IIa) (Brain acyl-CoA hydrolase) (Acyl-CoA thioesterase 7) [Taxonomy]
    • gi|58177027|pdb|1VPM|C_25:157 Chain C, Crystal Structure Of Acyl-Coa Hydrolase (Np_241664.1) From Bacillus Halodurans At 1.66 A Resolution [Taxonomy]
    • gi|58177026|pdb|1VPM|B Chain B, Crystal Structure Of Acyl-Coa Hydrolase (Np_241664.1) From Bacillus Halodurans At 1.66 A Resolution [Taxonomy]
    • gi|58177025|pdb|1VPM|A Chain A, Crystal Structure Of Acyl-Coa Hydrolase (Np_241664.1) From Bacillus Halodurans At 1.66 A Resolution [Taxonomy]
    • gi|8469216|sp|Q39473|FATB_CINCA_102:251 Myristoyl-acyl carrier protein thioesterase, chloroplast precursor (14:0-acyl-carrier protein thioesterase) (14:0-ACP thioesterase) (Acyl-[acyl-carrier protein] hydrolase) [Taxonomy]
    • gi|1143156|gb|AAC49151.1| acyl-ACP thioesterase [Taxonomy]
    • gi|1585440|prf||2124429A acyl-acyl carrier protein thioesterase [Taxonomy]
    • gi|73956766|ref|XP_536727.2|_173:304 PREDICTED: similar to Cytosolic acyl coenzyme A thioester hydrolase (Long chain acyl-CoA thioester hydrolase) (CTE-II) (CTE-IIa) (Brain acyl-CoA hydrolase) [Canis familiaris]
    • gi|76637499|ref|XP_592693.2|_173:304 PREDICTED: similar to Cytosolic acyl coenzyme A thioester hydrolase (Long chain acyl-CoA thioester hydrolase) (CTE-II) (CTE-IIa) (Brain acyl-CoA hydrolase) isoform 1 [Bos taurus]
    • gi|76637497|ref|XP_880062.1|_176:307 PREDICTED: similar to Cytosolic acyl coenzyme A thioester hydrolase (Long chain acyl-CoA thioester hydrolase) (CTE-II) (CTE-IIa) (Brain acyl-CoA hydrolase) isoform 4 [Bos taurus]
    • gi|76637501|ref|XP_870188.1|_226:357 PREDICTED: similar to brain acyl-CoA hydrolase isoform hBACHa isoform 2 [Bos taurus]
    • gi|8469218|sp|Q41635|FATB_UMBCA_102:251 Lauroyl-acyl carrier protein thioesterase, chloroplast precursor (12:0-acyl-carrier protein thioesterase) (12:0-ACP thioesterase) (Acyl-[acyl-carrier protein] hydrolase) (BTE) [Taxonomy]
    • gi|170556|gb|AAA34215.1| thioesterase [Taxonomy]
    • gi|76637501|ref|XP_870188.1|_37:189 PREDICTED: similar to brain acyl-CoA hydrolase isoform hBACHa isoform 2 [Bos taurus]
    • gi|76791085|ref|ZP_00773593.1|_13:154 4-hydroxybenzoyl-CoA thioesterase [Pseudoalteromonas atlantica T6c]
    • gi|76593708|gb|EAO69890.1| 4-hydroxybenzoyl-CoA thioesterase [Pseudoalteromonas atlantica T6c]
    • gi|60594152|pdb|1Y7U|C_16:144 Chain C, Crystal Structure Of Acyl-Coa Hydrolase From Bacillus Cereus [Taxonomy]
    • gi|60594151|pdb|1Y7U|B Chain B, Crystal Structure Of Acyl-Coa Hydrolase From Bacillus Cereus [Taxonomy]
    • gi|60594150|pdb|1Y7U|A Chain A, Crystal Structure Of Acyl-Coa Hydrolase From Bacillus Cereus [Taxonomy]
    • gi|73956766|ref|XP_536727.2|_2:136 PREDICTED: similar to Cytosolic acyl coenzyme A thioester hydrolase (Long chain acyl-CoA thioester hydrolase) (CTE-II) (CTE-IIa) (Brain acyl-CoA hydrolase) [Canis familiaris]
    • gi|76637499|ref|XP_592693.2|_2:136 PREDICTED: similar to Cytosolic acyl coenzyme A thioester hydrolase (Long chain acyl-CoA thioester hydrolase) (CTE-II) (CTE-IIa) (Brain acyl-CoA hydrolase) isoform 1 [Bos taurus]
    • gi|21466133|pdb|1LO8|A_1:139 Chain A, X-Ray Crystal Structure Of 4-Hydroxybenzoyl Coa Thioesterase Complexed With 4-Hydroxybenzyl Coa [Taxonomy]
    • gi|21466132|pdb|1LO7|A Chain A, X-Ray Structure Of 4-Hydroxybenzoyl Coa Thioesterase Complexed With 4-Hydroxyphenacyl Coa [Taxonomy]
    • gi|6729739|pdb|1BVQ|A Chain A, Three-Dimensional Structure Of 4-Hydroxybenzoyl Coa Thioesterase From Pseudomonas Sp. Strain Cbs-3 [Taxonomy]
    • gi|76637497|ref|XP_880062.1|_2:136 PREDICTED: similar to Cytosolic acyl coenzyme A thioester hydrolase (Long chain acyl-CoA thioester hydrolase) (CTE-II) (CTE-IIa) (Brain acyl-CoA hydrolase) isoform 4 [Bos taurus]
    • gi|21466134|pdb|1LO9|A_1:139 Chain A, X-Ray Crystal Structure Of 4-Hydroxybenzoyl Coa Thioesterase Mutant D17n Complexed With 4-Hydroxybenzoyl Coa [Taxonomy]
    • gi|99032484|pdb|2GF6|D_2:132 Chain D, Crystal Structure Of Conserved Hypothetical Protein (13815598) From Sulfolobus Solfataricus At 1.91 A Resolution [Taxonomy]
    • gi|99032483|pdb|2GF6|C Chain C, Crystal Structure Of Conserved Hypothetical Protein (13815598) From Sulfolobus Solfataricus At 1.91 A Resolution [Taxonomy]
    • gi|99032482|pdb|2GF6|B Chain B, Crystal Structure Of Conserved Hypothetical Protein (13815598) From Sulfolobus Solfataricus At 1.91 A Resolution [Taxonomy]
    • gi|99032481|pdb|2GF6|A Chain A, Crystal Structure Of Conserved Hypothetical Protein (13815598) From Sulfolobus Solfataricus At 1.91 A Resolution [Taxonomy]
    • gi|76634096|ref|XP_594209.2|_103:242 PREDICTED: similar to mesenchymal stem cell protein DSCD75 [Bos taurus]
    • gi|23495557|dbj|BAC20217.1|_50:181 acyl-CoA hydrolase [Mus musculus]
    • gi|28376965|sp|Q91V12|BACH_MOUSE Cytosolic acyl coenzyme A thioester hydrolase (Long chain acyl-CoA thioester hydrolase) (CTE-II) (CTE-IIa) (Brain acyl-CoA hydrolase) (Acyl-CoA thioesterase 7) [Taxonomy]
    • gi|85681911|sp|Q64559|BACH_RAT_50:181 Cytosolic acyl coenzyme A thioester hydrolase (Long chain acyl-CoA thioester hydrolase) (CTE-II) (CTE-IIa) (Brain acyl-CoA hydrolase) (ACT) (CTE-IIb) (LACH1) (MTE-II) (ACH1) (Acyl-CoA thioesterase 7) [Taxonomy]
    • gi|76795114|ref|ZP_00777552.1|_1:135 Thioesterase superfamily [Pseudoalteromonas atlantica T6c]
    • gi|76589608|gb|EAO65858.1| Thioesterase superfamily [Pseudoalteromonas atlantica T6c]