# List of top-scoring protein chains for T0362.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2cyeA 133 3.38e-10 1s5uA 138 7.39e-10 d.38.1.1 98573 1njkA 156 1.81e-09 d.38.1.1 85818 2av9A 147 4.12e-09 1z54A 132 5.21e-09 1yliA 153 2.92e-08 1vpmA 169 3.03e-08 2aliA 158 4.41e-08 2gf6A 135 1.22e-07 1y7uA 174 3.88e-07 1lo7A 141 1.45e-06 d.38.1.1 74144 1lo9A 141 1.77e-06 d.38.1.1 74146 2gvhA 288 2.66e-06 2essA 248 5.41e-05 2h4uA 145 2.77e-04 2cy9A 140 4.30e-04 1u1zA 168 6.64e-04 d.38.1.6 107602 2b3nA 159 1.81e-03 1zkiA 133 2.11e-03 1wluA 136 2.48e-03 2fs2A 151 4.15e-03 1psuA 140 4.15e-03 d.38.1.5 88285 1ixlA 131 1.05e-02 d.38.1.5 90717 1iq6A 134 1.34e-02 d.38.1.4 76755 2b6eA 146 4.30e-02 1o0iA 138 4.91e-02 d.38.1.5 86532 1zhgA 139 1.99e-01 1z6bA 154 2.01e-01 2cwzA 141 2.68e-01 1t82A 155 2.71e-01 d.38.1.5 106639 1q6wA 161 3.20e-01 d.38.1.4 96000 1q4uA 151 4.39e-01 d.38.1.5 95828 1c8uA 285 9.40e-01 1c8uA d.38.1.3,d.38.1.3 38547,38548 1sh8A 154 1.71e+00 d.38.1.5 105549 2fl8A 602 2.72e+00 1vh9A 149 3.80e+00 d.38.1.5 100653 2bdvA 231 6.37e+00 1yocA 147 7.58e+00 1zxkA 98 9.37e+00 2a4eA 215 9.39e+00 2a62A 322 9.77e+00 1vh5A 148 9.87e+00 d.38.1.5 100642 1te5A 257 1.03e+01 d.153.1.1 106795 2a4cA 99 1.26e+01 1sbkA 144 1.33e+01 d.38.1.5 98791 2f4lA 297 1.66e+01 1eg0B 148 1.80e+01 1pkp i.1.1.1 45808 1pkp 150 1.81e+01 1pkp d.14.1.1,d.50.1.2 37551,38787 1dv4E 145 1.83e+01 i.1.1.3 45875 2cdhS 248 1.98e+01 1s9cA 298 2.02e+01 2bi0A 337 2.41e+01 1ex9A 285 2.67e+01 1cvl c.69.1.18 34785 1k77A 260 3.05e+01 c.1.15.5 72096 1j5uA 136 3.07e+01 d.208.1.1 71584 1rcqA 357 3.25e+01 b.49.2.2,c.1.6.1 104882,104883 1szzA 177 3.33e+01 1y6hA 177 3.46e+01 1vmkA 277 3.96e+01 1ah9 71 4.24e+01 1ah9 b.40.4.5 25330 1u83A 276 4.25e+01 c.1.27.1 107732 1rjdA 334 4.34e+01 c.66.1.37 97558 1oysA 245 4.42e+01 d.14.1.4,d.101.1.1 93758,93759 1oypA 245 4.73e+01 d.14.1.4,d.101.1.1 93734,93735 1hjxA 362 4.80e+01 c.1.8.5,d.26.3.1 83512,83513 1f8rA 498 4.81e+01 1f8rA c.3.1.2,d.16.1.5 30410,37974 1euzA 419 5.14e+01 1k89 c.2.1.7,c.58.1.1 59513,59514 1tuoA 464 5.23e+01 1rf1C 311 5.39e+01 d.171.1.1,h.1.8.1 97351,97352 1ny71 189 5.59e+01 1fzcC 319 5.61e+01 3fib d.171.1.1,h.1.8.1 42461,45592 1n86C 324 5.61e+01 d.171.1.1,h.1.8.1 80280,80281 1wguA 136 5.65e+01 1mejA 223 5.66e+01 c.65.1.1 79029 1re3C 311 5.69e+01 d.171.1.1,h.1.8.1 104894,104895 2fibA 269 5.73e+01 3fib d.171.1.1 42457 2davA 126 5.77e+01 3fib 249 5.79e+01 3fib d.171.1.1 42455 1xrvA 361 5.80e+01 2dpeA 361 6.18e+01 1pg4A 652 6.18e+01 e.23.1.1 88067 1grj 158 6.38e+01 1grj a.2.1.1,d.26.1.2 15691,38433 2g1lA 104 6.59e+01 1af6A 421 6.65e+01 2mprA f.4.3.2 43772 1vorV 113 6.67e+01 2d3oS 115 6.73e+01 1sv8A 361 6.99e+01 c.1.8.5,d.26.3.1 99019,99020 1vjzA 341 7.31e+01 c.1.8.3 100838 1hd0A 75 7.34e+01 1ha1 d.58.7.1 39188 1ckv 141 7.38e+01 1ckv d.137.1.1 41452 2f4pA 147 7.69e+01 1sgwA 214 7.97e+01 c.37.1.12 105541 1jhcA 137 8.00e+01 b.87.1.1 63054 1nfdE 212 8.04e+01 8fabA b.1.1.1,b.1.1.2 20186,21202 2gk1B 503 8.06e+01 1nowA 507 8.07e+01 c.1.8.6,d.92.2.1 85936,85937 1o7aA 515 8.08e+01 c.1.8.6,d.92.2.1 92608,92609 1yrqH 549 8.12e+01 1nkgA 508 8.19e+01 b.3.1.2,b.18.1.25,b.30.5.10 103859,103860,103861 1frfL 564 8.29e+01 1h2rL e.18.1.1 43300 1yqwQ 549 8.37e+01 1tie 172 8.39e+01 1wba b.42.4.1 25592 1lilA 212 8.46e+01 8fabA b.1.1.1,b.1.1.2 20557,21466 1tbuA 118 8.47e+01 1outB 146 8.58e+01 1cg5B a.1.1.2 15579 1x4zA 121 8.67e+01 1q3tA 236 8.77e+01 c.37.1.1 104525 1jhhA 202 8.78e+01 a.4.5.2,b.87.1.1 63060,63061 1k32A 1045 8.78e+01 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 1vr9A 213 8.78e+01 1y6wA 148 8.78e+01 1e6yA 569 8.83e+01 1mroA a.89.1.1,d.58.31.2 18529,39447 1txqA 93 8.86e+01 1eluA 390 8.94e+01 1elqA c.67.1.3 34434 1p6pA 125 8.97e+01 b.60.1.2 87839