# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2cyeA 133 1.56e-10 1s5uA 138 5.16e-10 d.38.1.1 98573 1z54A 132 1.71e-09 1njkA 156 1.96e-09 d.38.1.1 85818 2av9A 147 2.80e-09 2aliA 158 1.81e-08 2gf6A 135 3.11e-08 1yliA 153 5.12e-08 1vpmA 169 1.51e-07 1lo7A 141 3.45e-07 d.38.1.1 74144 1bvqA 141 4.19e-07 1bvqA d.38.1.1 38542 2essA 248 1.54e-06 2gvhA 288 1.83e-05 2h4uA 145 1.81e-04 1u1zA 168 1.17e-03 d.38.1.6 107602 1wluA 136 1.96e-03 1j1yA 136 1.98e-03 d.38.1.5 90776 1ixlA 131 4.09e-03 d.38.1.5 90717 2fs2A 151 5.14e-03 1zkiA 133 5.82e-03 1psuA 140 6.80e-03 d.38.1.5 88285 2b3nA 159 1.16e-02 1iq6A 134 3.38e-02 d.38.1.4 76755 1c8uA 285 3.96e-02 1c8uA d.38.1.3,d.38.1.3 38547,38548 2b6eA 146 6.76e-02 2cwzA 141 6.79e-02 1o0iA 138 8.52e-02 d.38.1.5 86532 1q4uA 151 1.30e-01 d.38.1.5 95828 1z6bA 154 2.10e-01 1t82A 155 5.40e-01 d.38.1.5 106639 1vh5A 148 1.08e+00 d.38.1.5 100642 2bi0A 337 1.36e+00 1sh8A 154 5.24e+00 d.38.1.5 105549 1te5A 257 7.90e+00 d.153.1.1 106795 1tuoA 464 1.14e+01 1txqA 93 1.16e+01 1zxkA 98 1.18e+01 1mvlA 209 1.25e+01 c.34.1.1 85146 1tbuA 118 1.29e+01 1plq 258 1.59e+01 1plq d.131.1.2,d.131.1.2 41388,41389 1vhoA 346 1.77e+01 b.49.3.1,c.56.5.4 100694,100695 1d3yA 301 1.81e+01 1d3yA e.12.1.1 43252 1e20A 209 1.89e+01 1e20A c.34.1.1 31759 1nlbH 218 2.10e+01 b.1.1.1,b.1.1.2 80621,80622 1qfoA 119 2.42e+01 1qfoA b.1.1.1 19708 1vjzA 341 2.49e+01 c.1.8.3 100838 2aieP 203 2.53e+01 1t4wA 196 2.60e+01 b.2.5.2 106427 1xx6A 191 2.61e+01 1whnA 128 2.66e+01 1ne8A 117 2.79e+01 b.34.6.2 80424 1hbq 183 2.79e+01 1aqb b.60.1.1 27078 1c5yB 253 2.86e+01 5ptp 1xmrA 243 2.95e+01 2f4lA 297 3.07e+01 1yoeA 322 3.08e+01 1u7kA 131 3.09e+01 1lm6A 215 3.19e+01 d.167.1.1 84628 2b8tA 223 3.21e+01 2aioA 269 3.35e+01 1yocA 147 3.36e+01 1iqzA 81 3.39e+01 d.58.1.4 66281 1gj7B 253 3.63e+01 1pkp 150 3.65e+01 1pkp d.14.1.1,d.50.1.2 37551,38787 1kt6A 183 4.03e+01 b.60.1.1 84466 1aqb 183 4.06e+01 1aqb b.60.1.1 27084 1mxmA 254 4.12e+01 b.38.1.3,d.58.43.1,f.34.1.1 79647,79648,79649 1zjjA 263 4.30e+01 1f8rA 498 4.34e+01 1f8rA c.3.1.2,d.16.1.5 30410,37974 2avnA 260 4.39e+01 1smlA 269 4.42e+01 1smlA d.157.1.1 42053 2eueA 279 4.50e+01 2a72A 146 4.65e+01 2b06A 155 4.73e+01 1pn2A 280 4.81e+01 d.38.1.4,d.38.1.4 94930,94931 8fabA 212 4.82e+01 8fabA b.1.1.1,b.1.1.2 19772,20882 1ckiA 317 4.96e+01 1csn d.144.1.7 41660 1f3mA 80 4.99e+01 1f3mA j.66.1.1 46358 1l5jA 865 5.01e+01 a.118.15.1,c.8.2.1,c.83.1.1 73592,73593,73594 2ffjA 300 5.21e+01 1oahA 519 5.21e+01 a.138.1.3 86736 1m3sA 186 5.26e+01 c.80.1.3 78573 1nbfA 353 5.27e+01 d.3.1.9 80387 1ox0A 430 5.29e+01 c.95.1.1,c.95.1.1 87495,87496 1qftA 175 5.38e+01 1qftA b.60.1.1 27151 3fib 249 5.44e+01 3fib d.171.1.1 42455 1jykA 254 5.44e+01 c.68.1.13 67458 1hnjA 317 5.45e+01 1hn9A c.95.1.2,c.95.1.2 35969,35970 2aabL 218 5.50e+01 2ct9A 208 5.68e+01 2fibA 269 5.81e+01 3fib d.171.1.1 42457 1ltlA 279 5.90e+01 b.40.4.11 84701 1vr5A 547 5.98e+01 1a8i 842 5.99e+01 1a8i c.87.1.4 35490 1rjdA 334 6.09e+01 c.66.1.37 97558 1lm4A 194 6.36e+01 d.167.1.1 84626 1je6A 275 6.40e+01 b.1.1.2,d.19.1.1 71638,71639 1rcqA 357 6.50e+01 b.49.2.2,c.1.6.1 104882,104883 1lid 131 6.63e+01 1hmt b.60.1.2 27184 2bvpA 276 6.68e+01 1w66A 232 6.69e+01 2bm3A 166 6.77e+01 2bwqA 129 6.81e+01 1v64A 108 6.83e+01 a.21.1.1 108392 1i4wA 353 6.86e+01 c.66.1.24 66028 2bnkA 67 6.95e+01 2a0jA 149 6.99e+01 1n0wB 35 7.08e+01 j.97.1.1 79773 2booA 247 7.11e+01 2axpA 173 7.13e+01 1e8yA 966 7.15e+01 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19152,23187,37635,41715 1k7hA 476 7.21e+01 c.76.1.1 72101 1xyiA 66 7.22e+01 1j6oA 268 7.31e+01 c.1.9.12 77088 1uhnA 189 7.31e+01 a.39.1.5 99399 1m55A 197 7.36e+01 d.89.1.3 74469 1smoA 119 7.50e+01 b.1.1.1 105764 1zmdA 474 7.62e+01 1vd2A 89 7.62e+01 d.15.2.2 108517 1g7nA 131 7.64e+01 b.60.1.2 83274 1spgB 147 7.69e+01 1cg5B a.1.1.2 15588 1f8yA 157 7.70e+01 1f8xA c.23.14.1 31395 2av7A 275 7.75e+01 1rz1A 161 7.79e+01 b.45.1.2 98124 1u09A 476 7.87e+01 e.8.1.4 107545 1j5uA 136 7.93e+01 d.208.1.1 71584 1wdyA 285 7.95e+01 2b5dX 528 7.96e+01 1z2iA 358 7.97e+01 1jb0F 164 8.02e+01 1jb0F f.23.16.1 62825 2ew0A 192 8.04e+01 1wmhA 89 8.06e+01 1yg9A 330 8.11e+01 1itcA 516 8.28e+01 b.3.1.1,c.1.8.1 83705,83706 1hr0W 71 8.29e+01 1ah9 b.40.4.5 25329 1to6A 371 8.31e+01 c.141.1.1 107170 2dcnA 311 8.32e+01 1vorQ 125 8.36e+01 1gsoA 431 8.44e+01 1gsoA b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 2c5rA 67 8.47e+01 1y6hA 177 8.48e+01 2av1A 275 8.54e+01 1m3wA 32 8.76e+01 k.8.1.1 78575 1vjqA 79 8.88e+01 k.43.1.1 100830 1h5uA 842 8.93e+01 1a8i c.87.1.4 60655 1ug3A 339 8.97e+01