# List of top-scoring protein chains for T0361.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2iugA 120 1.92e+00 1jj2B 337 2.19e+00 1ffkB b.43.3.2 63086 1vqoB 338 2.19e+00 1ffkB 337 2.24e+00 1ffkB b.43.3.2 25719 1yl3E 338 2.48e+00 2bvfA 459 2.72e+00 2hrvA 142 6.17e+00 2hrvA b.47.1.4 26429 1ehyA 294 7.71e+00 1ehyA c.69.1.11 34693 1dq3A 454 1.36e+01 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1av6A 295 1.37e+01 3mag c.66.1.25 34218 4dcg 307 1.38e+01 3mag c.66.1.25 34208 1v4aA 440 1.38e+01 a.24.16.4,d.218.1.9 108350,108351 3mct 297 1.38e+01 3mag c.66.1.25 34215 1jteA 307 1.38e+01 c.66.1.25 71860 1eamA 307 1.39e+01 3mag c.66.1.25 34212 1eqa 297 1.39e+01 3mag c.66.1.25 34216 3mag 307 1.40e+01 3mag c.66.1.25 34205 1v39 322 1.49e+01 3mag c.66.1.25 34206 1vp3 348 1.52e+01 3mag c.66.1.25 34209 1l3aA 227 1.65e+01 d.18.1.2 73531 2ga9A 297 1.67e+01 1fs7A 485 1.81e+01 1qdbA a.138.1.3 19691 1vpt 348 1.84e+01 3mag c.66.1.25 34207 1fs9A 507 1.86e+01 1qdbA a.138.1.3 19693 1j4aA 333 2.21e+01 c.2.1.4,c.23.12.1 71502,71503 1n4xH 120 2.36e+01 b.1.1.1 85324 1j49A 333 2.43e+01 c.2.1.4,c.23.12.1 71498,71499 1cl7H 135 2.50e+01 1gc1H b.1.1.1,b.1.1.2 20419,21389 1io8A 368 2.54e+01 1f4tA a.104.1.1 62618 1io7A 368 2.58e+01 1f4tA a.104.1.1 18971 1ft2A 315 2.61e+01 1ft1A a.118.6.1 19190 1eepA 404 2.67e+01 1ak5 c.1.5.1 28636 1nl4A 312 2.71e+01 a.118.6.1 80617 1ni1A 315 2.73e+01 a.118.6.1 91888 1xctL 80 2.74e+01 1xf5L 80 2.79e+01 1nx8A 273 2.84e+01 b.82.2.8 86374 1rtg 210 2.89e+01 1gen b.66.1.1 27537 1qbqA 333 2.92e+01 1ft1A a.118.6.1 19187 1gen 218 2.94e+01 1gen b.66.1.1 27536 1jcrA 377 3.00e+01 a.118.6.1 66506 1w33A 181 3.07e+01 1o5mA 377 3.14e+01 a.118.6.1 92507 1o1tA 380 3.14e+01 a.118.6.1 86551 1aba 87 3.16e+01 1aba c.47.1.1 32760 1aazA 87 3.24e+01 1aba c.47.1.1 32761 1wyyA 149 3.60e+01 1yy3A 346 3.73e+01 2cycA 375 4.22e+01 2cknA 95 4.26e+01 2pna 104 4.27e+01 1qadA d.93.1.1 40501 1tn6A 382 4.28e+01 1hqkA 154 4.29e+01 c.16.1.1 65902 1dusA 194 4.35e+01 1dusA c.66.1.4 34182 1t3kA 152 4.39e+01 c.46.1.1 106357 2dddA 225 4.73e+01 2bjnA 160 4.87e+01 2c7bA 311 4.90e+01 1mg5A 255 5.16e+01 c.2.1.2 91264 1fu5A 111 5.39e+01 1qadA d.93.1.1 40505 1svzA 247 5.55e+01 1q8fA 313 5.62e+01 c.70.1.1 96203 2aw4J 142 5.67e+01 1id4A 256 5.89e+01 1lay b.57.1.1 62291 1ebdC 41 6.03e+01 1ebdC a.9.1.1 16355 2pdd 43 6.03e+01 1ebdC a.9.1.1 16358 1qdbA 473 6.05e+01 1qdbA a.138.1.3 19688 2f2fC 186 6.57e+01 1uulA 202 6.60e+01 1cmvA 256 6.84e+01 1lay b.57.1.1 27015 1iedA 256 6.84e+01 1lay b.57.1.1 62321 2cv8A 180 6.87e+01 1x65A 89 6.87e+01 1lay 256 7.22e+01 1lay b.57.1.1 27014 1msk 331 7.34e+01 1msk d.173.1.1 42495 1nkkA 256 7.37e+01 b.57.1.1 80567 1b9uA 34 7.40e+01 1b9uA j.35.1.1 46260 1ark 60 7.54e+01 1bb9 b.34.2.1 24473 1njtA 256 7.60e+01 b.57.1.1 80555 2rslA 140 7.63e+01 2rslA c.53.1.1 33345 1wncA 112 7.73e+01 h.3.3.1 109428 1jq6A 256 7.76e+01 b.57.1.1 63226 1wpoA 256 7.82e+01 1lay b.57.1.1 27012 1w85I 49 7.85e+01 2wpoA 256 8.15e+01 1lay b.57.1.1 27017 1gdtA 183 8.18e+01 2rslA a.4.1.2,c.53.1.1 16021,33348 1iecA 256 8.24e+01 1lay b.57.1.1 62319 1yb2A 275 8.24e+01 1lf9B 674 8.48e+01 a.102.1.5,b.30.5.5 77924,77925 1w4gA 47 8.56e+01 1lf6A 684 8.69e+01 a.102.1.5,b.30.5.5 77918,77919 1rh5A 436 8.72e+01 f.41.1.1 97464 1rhzA 436 8.82e+01 f.41.1.1 97495 1w3dA 55 8.92e+01 a.9.1.1 109151 1ymhE 65 8.95e+01