# List of top-scoring protein chains for t06-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1yyqA 374 2.04e+00 2grrB 170 2.45e+00 1f45B 197 2.50e+00 1f45B a.26.1.1 59642 1ow4A 129 3.46e+00 a.39.2.1 93628 1x1nA 524 4.36e+00 1oxjA 173 4.53e+00 a.60.1.2,a.118.1.13 87517,87518 1huxA 270 5.27e+00 1huxA c.55.1.5 61278 1rtwA 220 5.48e+00 a.132.1.3 97823 1ecmA 109 5.87e+00 1ecmA a.130.1.1 19492 1w33A 181 6.20e+00 2dfkA 402 6.76e+00 3gcb 470 6.79e+00 3gcb d.3.1.1 37032 2ahqA 76 6.93e+00 1orsC 132 7.04e+00 f.14.1.1 87353 1nc5A 373 8.07e+00 a.102.1.6 85548 1vkeA 133 8.07e+00 a.152.1.2 108650 2gyqA 175 8.62e+00 1r3sA 367 8.99e+00 c.1.22.1 96963 2aq8A 269 9.04e+00 1ll2A 333 9.41e+00 c.68.1.14 74005 1h3qA 140 1.08e+01 d.110.4.3 76652 2fbnA 198 1.10e+01 1ofcX 304 1.13e+01 a.4.1.3,a.4.1.13,a.187.1.1 92826,92827,92828 1zs3A 182 1.15e+01 1rcwA 231 1.16e+01 a.132.1.4 97299 1h3nA 878 1.19e+01 a.27.1.1,b.51.1.1,c.26.1.1 76641,76642,76643 1t56A 216 1.22e+01 a.4.1.9,a.121.1.1 106428,106429 1b9uA 34 1.24e+01 1b9uA j.35.1.1 46260 1e7lA 157 1.27e+01 1en7A a.140.4.1,d.4.1.5 64728,64729 1rxqA 178 1.51e+01 a.213.1.1 105118 1rqjA 299 1.52e+01 a.128.1.1 97744 1zgyA 272 1.55e+01 1wudA 89 1.55e+01 1zejA 293 1.55e+01 1ry6A 360 1.59e+01 c.37.1.9 98090 1i5nA 146 1.61e+01 1i5nA a.24.10.3 61805 1rw6A 210 1.63e+01 a.47.4.1 105113 1vkmA 297 1.64e+01 c.138.1.1 108670 3grs 478 1.69e+01 3grs c.3.1.5,c.3.1.5,d.87.1.1 30441,30442,40152 1w5fA 353 1.73e+01 1m5wA 243 1.85e+01 c.1.24.1 84836 1eg3A 261 1.91e+01 1eg3A a.39.1.7,a.39.1.7,b.72.1.1 17376,17377,27805 2b69A 343 1.96e+01 2b67A 204 2.02e+01 1t3wA 148 2.06e+01 1g60A 260 2.07e+01 c.66.1.11 70151 2a72A 146 2.12e+01 2gnoA 305 2.13e+01 1sumB 235 2.16e+01 a.7.12.1 106025 1j8mF 297 2.29e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 2etdA 171 2.31e+01 1q5nA 454 2.34e+01 a.127.1.1 95901 1j1iA 296 2.45e+01 c.69.1.10 83977 1w7jA 795 2.63e+01 2beqA 38 2.64e+01 1em9A 154 2.74e+01 1d1dA a.73.1.1 18333 1hyp 80 2.81e+01 1hyp a.52.1.1 17806 2akaB 299 2.97e+01 1wmiA 90 3.08e+01 1sz9A 144 3.20e+01 a.118.9.4 106139 1gntA 553 3.24e+01 e.26.1.1 70290 1eny 268 3.31e+01 1eny c.2.1.2 29910 2be4A 272 3.32e+01 1mo9A 523 3.35e+01 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343 3thiA 371 3.39e+01 2thiA c.94.1.1 35792 1x46A 150 3.40e+01 1l3lA 234 3.41e+01 a.4.6.2,d.110.5.1 73541,73542 1wdcC 156 3.44e+01 1wdcC a.39.1.5 17317 1uwsA 489 3.46e+01 c.1.8.4 108073 2db0A 253 3.47e+01 1b5pA 385 3.47e+01 c.67.1.1 90403 2azjA 289 3.58e+01 1yrcA 414 3.58e+01 1uekA 275 3.62e+01 d.14.1.5,d.58.26.5 88483,88484 1dc1A 323 3.75e+01 1dc1A c.52.1.11 33321 1kcfA 258 3.88e+01 a.140.2.1,c.55.3.7 68434,68435 1dq3A 454 3.89e+01 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1t94A 459 3.90e+01 d.240.1.1,e.8.1.7 106701,106702 1uq5A 263 3.91e+01 d.165.1.1 99778 1n7oA 721 3.97e+01 a.102.3.2,b.24.1.1,b.30.5.2 80259,80260,80261 2bptA 861 3.97e+01 1yxcA 292 4.06e+01 1u00A 227 4.14e+01 1n40A 396 4.17e+01 a.104.1.1 79977 1wzdA 215 4.25e+01 1wy2A 351 4.35e+01 1u59A 287 4.35e+01 d.144.1.7 107681 1iw0A 215 4.41e+01 a.132.1.1 83720 1jpaA 312 4.45e+01 d.144.1.7 67011 1jalA 363 4.63e+01 c.37.1.8,d.15.10.2 84138,84139 1ash 150 4.77e+01 1ash a.1.1.2 15622 1my6A 199 4.99e+01 a.2.11.1,d.44.1.1 85232,85233 1r8eA 278 4.99e+01 a.6.1.3,d.60.1.1 104843,104844 1aisB 200 5.03e+01 1aisB a.74.1.2,a.74.1.2 18384,18385 1y7lA 316 5.08e+01 1lmb3 92 5.15e+01 1lmb3 1cpcA 162 5.22e+01 1cpcA a.1.1.3 15643 1wy1A 172 5.24e+01 1lj8A 493 5.25e+01 a.100.1.9,c.2.1.6 90392,90393 1sur 215 5.25e+01 1sur c.26.2.2 31620 1mkiA 330 5.28e+01 e.3.1.2 84994 1hw1A 239 5.37e+01 1e2xA a.4.5.6,a.78.1.1 16111,18441 1q8fA 313 5.37e+01 c.70.1.1 96203 2fuqA 747 5.45e+01 2fx0A 201 5.55e+01 1hz4A 373 5.57e+01 a.118.8.2 65960 1kblA 873 5.61e+01 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 1fkmA 396 5.61e+01 1fkmA a.69.2.1,a.69.2.1 18315,18316 1a99A 344 5.64e+01 1pot c.94.1.1 35812 1d9cA 121 5.91e+01 1d9cA a.26.1.3 16901 2etsA 128 5.96e+01 1vf1A 229 6.04e+01 1ro7A 259 6.08e+01 c.130.1.1 97667 1ylmA 144 6.09e+01 1x52A 124 6.11e+01 1ovlA 271 6.11e+01 a.123.1.1 87455 1m70A 190 6.15e+01 a.3.1.4,a.3.1.4 91200,91201 1b8dA 164 6.24e+01 1cpcA a.1.1.3 15665 1x79B 112 6.28e+01 1oyzA 280 6.28e+01 a.118.1.16 93775 1pz1A 333 6.28e+01 c.1.7.1 95390 2bl0C 142 6.35e+01 1oohA 126 6.36e+01 a.39.2.1 93383 2fs3A 282 6.41e+01 1siqA 392 6.49e+01 a.29.3.1,e.6.1.1 105585,105586 1p4oA 322 6.50e+01 d.144.1.7 87775 1kn1B 161 6.72e+01 a.1.1.3 77456 1zb1A 392 6.84e+01 1jysA 242 6.87e+01 c.56.2.1 77216 1wusA 180 6.88e+01 2bvlA 543 6.93e+01 2chnA 716 7.05e+01 2choA 716 7.06e+01 2bkrA 212 7.22e+01 2bvfA 459 7.23e+01 1svsA 353 7.27e+01 c.37.1.8 106051 1px5A 349 7.27e+01 a.160.1.2,d.218.1.6 95277,95278 1e5rA 290 7.27e+01 1e5rA b.82.2.4 59276 1bvoA 175 7.30e+01 1a3qA b.2.5.3 22457 1g3mA 294 7.32e+01 c.37.1.5 83268 1sx7A 164 7.35e+01 1r0vA 305 7.39e+01 c.52.2.1,c.52.2.1,d.75.1.1 96742,96743,96744 1yrbA 262 7.49e+01 1e4iA 447 7.56e+01 1e70M c.1.8.4 59225 1x3kA 152 7.61e+01 2rslA 140 7.63e+01 2rslA c.53.1.1 33345 1rp4A 389 7.63e+01 a.227.1.1 105027 2gdqA 382 7.68e+01 2bg9A 370 7.68e+01 1xkgA 312 7.74e+01 1y74A 57 7.76e+01 1kpsB 171 7.79e+01 a.118.12.1 68787 1uc2A 481 7.90e+01 d.261.1.1 99161 1gkpA 458 7.94e+01 b.92.1.3,c.1.9.6 70231,70232 2b3hA 329 7.94e+01 2b7aA 293 7.96e+01 2b1eA 564 8.00e+01 2c12A 439 8.01e+01 1t0fA 276 8.19e+01 1wkbA 810 8.19e+01 1vf6C 72 8.27e+01 a.194.1.1 100602 1sa3A 262 8.28e+01 c.52.1.23 105400 1zk8A 183 8.29e+01 1ksoA 101 8.36e+01 a.39.1.2 72926 1cs0A 1073 8.36e+01 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18558,31487,31673,31674,41518,41519 1u7lA 392 8.38e+01 1r1hA 696 8.39e+01 d.92.1.4 104756 1a9xA 1058 8.39e+01 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18550,31479,31657,31658,41502,41503 1qb2A 109 8.39e+01 1qb2A a.36.1.1 17125 1uw4B 248 8.45e+01 a.118.1.14 100072 1s9pA 227 8.48e+01 a.123.1.1 105384 1myt 146 8.50e+01 1a6m a.1.1.2 15207 2f2gA 221 8.55e+01 2evwX 166 8.59e+01 1dkiA 371 8.62e+01 1dkiA d.3.1.1 37090 1r4gA 53 8.84e+01 a.8.5.1 96996 1ctqA 166 8.86e+01 1ctqA c.37.1.8 31965 1wkqA 164 8.91e+01 c.97.1.2 109393 2bfxA 284 8.94e+01 1po5A 476 8.98e+01 a.104.1.1 94963