# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1f45B 197 1.83e-01 1f45B a.26.1.1 59642 1vqoB 338 3.75e-01 1ll2A 333 5.13e-01 c.68.1.14 74005 1xteA 154 6.86e-01 1jnyA 435 1.08e+00 b.43.3.1,b.44.1.1,c.37.1.8 66982,66983,66984 2bvfA 459 1.09e+00 1j8mF 297 1.25e+00 1ng1 a.24.13.1,c.37.1.10 62742,62743 1w33A 181 1.40e+00 1b5eA 246 1.88e+00 1b5eA d.117.1.1 41056 1fs7A 485 3.13e+00 1qdbA a.138.1.3 19691 2br9A 234 3.17e+00 1io7A 368 3.72e+00 1f4tA a.104.1.1 18971 2etsA 128 3.89e+00 1q8fA 313 4.03e+00 c.70.1.1 96203 1x9gA 200 4.07e+00 c.33.1.3 109527 2iugA 120 4.44e+00 2ahqA 76 5.09e+00 1w5fA 353 5.31e+00 1dkiA 371 5.77e+00 1dkiA d.3.1.1 37090 2g3kA 94 8.40e+00 1j4aA 333 9.75e+00 c.2.1.4,c.23.12.1 71502,71503 1lmb3 92 9.94e+00 1lmb3 1su0B 159 9.97e+00 d.224.1.2 106015 1nthA 458 1.12e+01 c.1.25.1 80730 1b5pA 385 1.14e+01 c.67.1.1 90403 1wkbA 810 1.14e+01 1zs3A 182 1.26e+01 1xsvA 113 1.28e+01 2b06A 155 1.28e+01 2b1eA 564 1.38e+01 1szqA 483 1.42e+01 e.44.1.1 99045 2hrvA 142 1.44e+01 2hrvA b.47.1.4 26429 1q8bA 105 1.62e+01 d.58.4.6 96201 1w9gA 104 1.73e+01 1c02A 166 1.88e+01 1qspA a.24.10.2 16633 1w2qA 127 1.90e+01 1tn6A 382 2.00e+01 1jykA 254 2.20e+01 c.68.1.13 67458 2cj4A 150 2.21e+01 1t3wA 148 2.33e+01 1w2wA 211 2.40e+01 c.124.1.5 109130 1h3qA 140 2.41e+01 d.110.4.3 76652 2aq8A 269 2.41e+01 2gnoA 305 2.46e+01 1rw1A 114 2.49e+01 1qhlA 227 2.51e+01 1qhlA c.37.1.12 32382 1flcB 175 2.56e+01 1flcB h.3.1.1 45716 1w7jA 795 2.65e+01 2eu9A 355 2.71e+01 1vqoM 195 2.79e+01 2b3hA 329 2.87e+01 1k92A 455 2.89e+01 c.26.2.1,d.210.1.1 68325,68326 1e6iA 121 2.91e+01 1b91A a.29.2.1 16969 1w9cA 321 3.05e+01 1px5A 349 3.14e+01 a.160.1.2,d.218.1.6 95277,95278 2booA 247 3.16e+01 2bmaA 470 3.35e+01 1b8dA 164 3.40e+01 1cpcA a.1.1.3 15665 1jyaA 130 3.49e+01 d.198.1.1 67453 1xizA 159 3.52e+01 1yt3A 375 3.61e+01 1wmiA 90 3.63e+01 1mp1A 111 3.69e+01 a.188.1.1 91382 1ej2A 181 3.70e+01 1f9aA c.26.1.3 59414 1ry6A 360 3.70e+01 c.37.1.9 98090 1ho8A 480 3.74e+01 1ho8A a.118.1.9 61107 1qoyA 318 3.84e+01 1qoyA h.4.4.1 45788 2g9zA 348 4.25e+01 1ldjA 760 4.25e+01 a.4.5.34,a.118.17.1,e.40.1.1 73847,73848,73849 1f5nA 592 4.36e+01 1dg3A a.114.1.1,c.37.1.8 19077,32152 1mwqA 101 4.51e+01 d.58.4.7 91481 1oz2A 331 4.59e+01 b.34.9.3,b.34.9.3,b.34.9.3 93781,93782,93783 1aba 87 4.61e+01 1aba c.47.1.1 32760 1pzxA 289 4.69e+01 c.119.1.1 95484 1huxA 270 5.01e+01 1huxA c.55.1.5 61278 1bm9A 122 5.07e+01 1bm9A a.4.5.7 16116 1cp2A 269 5.19e+01 1cp2A c.37.1.10 32269 2bm8A 236 5.28e+01 1nw1A 429 5.37e+01 d.144.1.8 86286 1n8kA 374 5.38e+01 b.35.1.2,c.2.1.1 80298,80299 2ab5A 269 5.46e+01 1m7sA 484 5.52e+01 e.5.1.1 74574 1u2pA 163 5.77e+01 2hmzA 113 5.78e+01 2mhr a.24.4.1 16564 2gsfA 373 5.87e+01 1s69A 124 5.94e+01 a.1.1.1 105305 1dusA 194 5.97e+01 1dusA c.66.1.4 34182 1iugA 352 6.03e+01 c.67.1.3 90699 1jalA 363 6.03e+01 c.37.1.8,d.15.10.2 84138,84139 1hb6A 86 6.07e+01 a.11.1.1 70959 2gyqA 175 6.12e+01 1g3mA 294 6.41e+01 c.37.1.5 83268 2db0A 253 6.46e+01 1paqA 189 6.83e+01 a.118.1.14 94413 2dfkA 402 6.87e+01 1g6eA 87 6.98e+01 1g6eA b.11.1.6 60317 1t17A 148 7.04e+01 1a3aA 148 7.11e+01 1a3aA d.112.1.1 40917 1ekeA 230 7.12e+01 1ekeA c.55.3.1 33572 1d2zA 108 7.35e+01 1d2zA a.77.1.2 18437 1dpe 507 7.46e+01 1dpe c.94.1.1 35799 1xx6A 191 7.49e+01 1a8q 274 7.50e+01 1brt c.69.1.12 34702 1kq3A 376 7.54e+01 e.22.1.2 68790 1x3lA 440 7.56e+01 1m93B 245 7.57e+01 1v30A 124 7.59e+01 1rd5A 262 7.65e+01 1w85I 49 7.68e+01 1sflA 238 7.78e+01 1z3xA 238 8.10e+01 1ekqA 272 8.23e+01 1c3qA c.72.1.2 34941 1lvfA 110 8.31e+01 a.47.2.1 74280 1uc7A 125 8.35e+01 c.47.1.1 99163 2bk9A 153 8.45e+01 1n4xH 120 8.48e+01 b.1.1.1 85324 1chmA 401 8.50e+01 1chmA c.55.2.1,d.127.1.1 33545,41142 2ex0A 399 8.52e+01 1po5A 476 8.66e+01 a.104.1.1 94963 2fhzB 108 8.81e+01 2bkyA 97 8.97e+01 1v71A 323 8.98e+01