# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 3gcb 470 4.08e-01 3gcb d.3.1.1 37032 1w33A 181 1.37e+00 1f45B 197 1.63e+00 1f45B a.26.1.1 59642 1ecmA 109 2.64e+00 1ecmA a.130.1.1 19492 1huxA 270 4.42e+00 1huxA c.55.1.5 61278 1rtwA 220 4.45e+00 a.132.1.3 97823 1rw6A 210 4.47e+00 a.47.4.1 105113 1i5nA 146 4.69e+00 1i5nA a.24.10.3 61805 2grrB 170 5.07e+00 1dq3A 454 5.40e+00 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1b3uA 588 6.07e+00 1b3uA a.118.1.2 19135 1e7lA 157 6.25e+00 1en7A a.140.4.1,d.4.1.5 64728,64729 2ahqA 76 6.91e+00 1ash 150 7.03e+00 1ash a.1.1.2 15622 1h3nA 878 7.08e+00 a.27.1.1,b.51.1.1,c.26.1.1 76641,76642,76643 2fx0A 201 7.15e+00 1gntA 553 7.74e+00 e.26.1.1 70290 1yyqA 374 7.77e+00 2fbnA 198 7.90e+00 1x1nA 524 8.35e+00 1t3wA 148 8.43e+00 1ow4A 129 8.47e+00 a.39.2.1 93628 1r1hA 696 8.67e+00 d.92.1.4 104756 2gyqA 175 8.86e+00 1h3qA 140 9.09e+00 d.110.4.3 76652 1sz9A 144 9.41e+00 a.118.9.4 106139 2akaB 299 1.04e+01 1wy1A 172 1.05e+01 1b9uA 34 1.09e+01 1b9uA j.35.1.1 46260 1ofcX 304 1.11e+01 a.4.1.3,a.4.1.13,a.187.1.1 92826,92827,92828 1q8fA 313 1.14e+01 c.70.1.1 96203 1eg3A 261 1.17e+01 1eg3A a.39.1.7,a.39.1.7,b.72.1.1 17376,17377,27805 1zs3A 182 1.21e+01 1vkeA 133 1.33e+01 a.152.1.2 108650 2gnoA 305 1.35e+01 1f60A 458 1.37e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 1rcwA 231 1.65e+01 a.132.1.4 97299 1mkiA 330 1.73e+01 e.3.1.2 84994 1m32A 366 1.75e+01 c.67.1.3 78508 2b1eA 564 1.81e+01 2beqA 38 1.86e+01 1wy2A 351 1.88e+01 1m70A 190 1.89e+01 a.3.1.4,a.3.1.4 91200,91201 1oxjA 173 1.89e+01 a.60.1.2,a.118.1.13 87517,87518 2f94F 350 1.95e+01 2gdqA 382 1.99e+01 1xteA 154 2.00e+01 1orsC 132 2.02e+01 f.14.1.1 87353 2fs3A 282 2.08e+01 1io7A 368 2.21e+01 1f4tA a.104.1.1 18971 1rxqA 178 2.27e+01 a.213.1.1 105118 2b2hA 399 2.34e+01 1jnrA 643 2.43e+01 a.7.3.1,c.3.1.4,d.168.1.1 66966,66967,66968 1z5hA 780 2.47e+01 1ll2A 333 2.55e+01 c.68.1.14 74005 2etdA 171 2.56e+01 1xjjA 644 2.63e+01 1g60A 260 2.63e+01 c.66.1.11 70151 2fjbA 643 2.70e+01 2bvfA 459 2.74e+01 1j8mF 297 2.76e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 1nc5A 373 2.80e+01 a.102.1.6 85548 1a32 88 3.02e+01 1a32 a.16.1.2 16384 1ry6A 360 3.05e+01 c.37.1.9 98090 1pz1A 333 3.09e+01 c.1.7.1 95390 1oohA 126 3.11e+01 a.39.2.1 93383 1po5A 476 3.16e+01 a.104.1.1 94963 2fnaA 357 3.16e+01 1uw4B 248 3.17e+01 a.118.1.14 100072 1zgyA 272 3.19e+01 1dkiA 371 3.21e+01 1dkiA d.3.1.1 37090 1rvgA 305 3.23e+01 c.1.10.2 97920 1aisB 200 3.37e+01 1aisB a.74.1.2,a.74.1.2 18384,18385 1r3sA 367 3.38e+01 c.1.22.1 96963 1w5fA 353 3.53e+01 2b69A 343 3.58e+01 1vqrA 297 3.67e+01 2rslA 140 3.70e+01 2rslA c.53.1.1 33345 1u59A 287 3.83e+01 d.144.1.7 107681 2ex0A 399 3.85e+01 1t06A 235 3.89e+01 a.118.1.17 106194 1g4wR 383 3.94e+01 1g4uS a.24.11.1,c.45.1.2 16644,32692 1uok 558 3.99e+01 1uok b.71.1.1,c.1.8.1 27801,28788 2bhwA 232 4.04e+01 2dfkA 402 4.09e+01 1j1iA 296 4.13e+01 c.69.1.10 83977 1gkpA 458 4.13e+01 b.92.1.3,c.1.9.6 70231,70232 1hu3A 260 4.15e+01 1hu3A a.118.1.14 19137 1kblA 873 4.16e+01 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 1em9A 154 4.22e+01 1d1dA a.73.1.1 18333 1b5pA 385 4.25e+01 c.67.1.1 90403 1y7yA 74 4.27e+01 1vkmA 297 4.29e+01 c.138.1.1 108670 1hyp 80 4.32e+01 1hyp a.52.1.1 17806 1sumB 235 4.39e+01 a.7.12.1 106025 1yxcA 292 4.43e+01 1zb1A 392 4.51e+01 2ge3A 170 4.59e+01 1paqA 189 4.66e+01 a.118.1.14 94413 1siqA 392 4.68e+01 a.29.3.1,e.6.1.1 105585,105586 2bkrA 212 4.69e+01 1wpoA 256 4.74e+01 1lay b.57.1.1 27012 1vqoB 338 4.79e+01 1b8dA 164 4.83e+01 1cpcA a.1.1.3 15665 1jalA 363 4.85e+01 c.37.1.8,d.15.10.2 84138,84139 1jfbA 404 4.87e+01 a.104.1.1 66624 1y74A 57 4.98e+01 1e5rA 290 4.99e+01 1e5rA b.82.2.4 59276 1hx1B 114 5.03e+01 1hx1B a.7.7.1 61350 2awiA 317 5.06e+01 1eny 268 5.08e+01 1eny c.2.1.2 29910 1jnyA 435 5.25e+01 b.43.3.1,b.44.1.1,c.37.1.8 66982,66983,66984 1x46A 150 5.26e+01 2chnA 716 5.26e+01 1l3lA 234 5.29e+01 a.4.6.2,d.110.5.1 73541,73542 1kcfA 258 5.43e+01 a.140.2.1,c.55.3.7 68434,68435 2aq8A 269 5.44e+01 1lqtA 456 5.48e+01 c.3.1.1,c.4.1.1 74198,74199 1kpsB 171 5.53e+01 a.118.12.1 68787 2ap3A 199 5.65e+01 1s3cA 141 5.75e+01 1x79B 112 5.82e+01 1lmzA 187 5.87e+01 a.96.1.4 74037 2d8aA 348 5.91e+01 1n83A 270 5.99e+01 a.123.1.1 80276 2bfxA 284 6.00e+01 1ss9A 311 6.02e+01 c.68.1.4 105978 2choA 716 6.09e+01 1xv5A 401 6.12e+01 1r0vA 305 6.18e+01 c.52.2.1,c.52.2.1,d.75.1.1 96742,96743,96744 2au3A 407 6.23e+01 2etsA 128 6.24e+01 1xkgA 312 6.25e+01 2c12A 439 6.30e+01 1fs7A 485 6.33e+01 1qdbA a.138.1.3 19691 1ca1 370 6.34e+01 1ca1 a.124.1.1,b.12.1.3 19340,23648 1nnwA 252 6.39e+01 d.159.1.5 80674 1yrcA 414 6.39e+01 1ux5A 411 6.41e+01 a.207.1.1 100144 1y7lA 316 6.47e+01 1zejA 293 6.47e+01 1lvfA 110 6.48e+01 a.47.2.1 74280 2db0A 253 6.56e+01 1m1nA 491 6.57e+01 c.92.2.3 78417 1tafA 68 6.67e+01 1tafA a.22.1.3 16481 1bvoA 175 6.78e+01 1a3qA b.2.5.3 22457 1q5nA 454 6.80e+01 a.127.1.1 95901 1dvkA 173 6.80e+01 1dvkA a.72.1.1 18319 1yovA 537 6.81e+01 1szqA 483 6.82e+01 e.44.1.1 99045 1j5pA 253 6.92e+01 d.81.1.3,c.2.1.3 71577,83092 1dowA 205 7.00e+01 1dovA a.24.9.1 16626 2gmyA 153 7.12e+01 1unlD 208 7.20e+01 2b9hA 353 7.25e+01 1s9pA 227 7.28e+01 a.123.1.1 105384 1mo9A 523 7.30e+01 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343 1u00A 227 7.38e+01 2c6cA 707 7.46e+01 1iw0A 215 7.55e+01 a.132.1.1 83720 2d8dA 90 7.60e+01 1px5A 349 7.60e+01 a.160.1.2,d.218.1.6 95277,95278 2cw9A 194 7.67e+01 1wleA 501 7.72e+01 1vf6C 72 7.77e+01 a.194.1.1 100602 1xffA 240 7.99e+01 d.153.1.1 109580 2fuqA 747 8.03e+01 2gdm 153 8.05e+01 2gdm a.1.1.2 15212 1d9cA 121 8.07e+01 1d9cA a.26.1.3 16901 1wkqA 164 8.12e+01 c.97.1.2 109393 1wmiA 90 8.18e+01 2cdqA 510 8.22e+01 1hw1A 239 8.24e+01 1e2xA a.4.5.6,a.78.1.1 16111,18441 1zp4A 304 8.26e+01 1jysA 242 8.34e+01 c.56.2.1 77216 2azjA 289 8.35e+01 1wudA 89 8.48e+01 1wzdA 215 8.48e+01 2bb6A 414 8.49e+01 1p4oA 322 8.52e+01 d.144.1.7 87775 1e4iA 447 8.54e+01 1e70M c.1.8.4 59225 1wddA 477 8.61e+01 1qhlA 227 8.73e+01 1qhlA c.37.1.12 32382 1rwtA 232 8.79e+01 f.43.1.1 97992 1oyzA 280 8.88e+01 a.118.1.16 93775 2fexA 188 8.88e+01 1axn 323 8.89e+01 1avc a.65.1.1 18149 1qusA 322 8.91e+01 1ltm d.2.1.6 36991 1qgtA 149 8.94e+01 1qgtA a.62.1.1 18135 1wmwA 330 8.98e+01 1fjlA 81 8.98e+01 2hddA a.4.1.1 16017