# List of top-scoring protein chains for t06-100-30-bys-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 3gcb 470 1.85e-01 3gcb d.3.1.1 37032 1f45B 197 8.26e-01 1f45B a.26.1.1 59642 1ecmA 109 1.14e+00 1ecmA a.130.1.1 19492 1zejA 293 1.34e+00 1yyqA 374 1.89e+00 1ry6A 360 1.91e+00 c.37.1.9 98090 1io7A 368 2.00e+00 1f4tA a.104.1.1 18971 1ow4A 129 2.54e+00 a.39.2.1 93628 1rcwA 231 2.74e+00 a.132.1.4 97299 1w33A 181 2.79e+00 1q8fA 313 2.99e+00 c.70.1.1 96203 1x1nA 524 4.27e+00 1jalA 363 4.31e+00 c.37.1.8,d.15.10.2 84138,84139 1po5A 476 4.59e+00 a.104.1.1 94963 2gnoA 305 4.79e+00 2grrB 170 4.82e+00 1g60A 260 5.52e+00 c.66.1.11 70151 2bvfA 459 5.72e+00 1t56A 216 6.65e+00 a.4.1.9,a.121.1.1 106428,106429 1sz9A 144 6.65e+00 a.118.9.4 106139 1b9uA 34 6.85e+00 1b9uA j.35.1.1 46260 1hu3A 260 7.08e+00 1hu3A a.118.1.14 19137 2beqA 38 7.25e+00 1ll2A 333 7.61e+00 c.68.1.14 74005 1b5pA 385 7.74e+00 c.67.1.1 90403 1wusA 180 7.74e+00 1z5hA 780 7.96e+00 1e5rA 290 7.96e+00 1e5rA b.82.2.4 59276 1zs3A 182 8.37e+00 1vkeA 133 8.62e+00 a.152.1.2 108650 1huxA 270 8.99e+00 1huxA c.55.1.5 61278 1h5uA 842 1.05e+01 1a8i c.87.1.4 60655 1oe4A 247 1.05e+01 c.18.1.3 86895 1lqtA 456 1.06e+01 c.3.1.1,c.4.1.1 74198,74199 1rtwA 220 1.10e+01 a.132.1.3 97823 1fs7A 485 1.10e+01 1qdbA a.138.1.3 19691 1x9gA 200 1.16e+01 c.33.1.3 109527 1e7lA 157 1.17e+01 1en7A a.140.4.1,d.4.1.5 64728,64729 1gkpA 458 1.23e+01 b.92.1.3,c.1.9.6 70231,70232 1hyp 80 1.29e+01 1hyp a.52.1.1 17806 1y7yA 74 1.32e+01 1wy2A 351 1.34e+01 1h3qA 140 1.34e+01 d.110.4.3 76652 1gntA 553 1.35e+01 e.26.1.1 70290 1szqA 483 1.41e+01 e.44.1.1 99045 2dfkA 402 1.43e+01 2azjA 289 1.49e+01 2a11A 242 1.54e+01 1r1hA 696 1.56e+01 d.92.1.4 104756 1jnyA 435 1.70e+01 b.43.3.1,b.44.1.1,c.37.1.8 66982,66983,66984 2fnaA 357 1.78e+01 2fbnA 198 1.79e+01 1rw6A 210 1.83e+01 a.47.4.1 105113 1x79B 112 1.84e+01 1dq3A 454 1.86e+01 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1paqA 189 1.87e+01 a.118.1.14 94413 1cpcA 162 1.89e+01 1cpcA a.1.1.3 15643 1dxeA 256 1.93e+01 1dxeA c.1.12.5 29310 1ug3A 339 2.00e+01 1uok 558 2.00e+01 1uok b.71.1.1,c.1.8.1 27801,28788 2ez6A 221 2.01e+01 1rp4A 389 2.02e+01 a.227.1.1 105027 2gyqA 175 2.11e+01 2f94F 350 2.13e+01 3thiA 371 2.17e+01 2thiA c.94.1.1 35792 1kpsB 171 2.23e+01 a.118.12.1 68787 1x46A 150 2.27e+01 1b8dA 164 2.35e+01 1cpcA a.1.1.3 15665 1m32A 366 2.45e+01 c.67.1.3 78508 1hz4A 373 2.47e+01 a.118.8.2 65960 2etsA 128 2.50e+01 1o08A 221 2.63e+01 c.108.1.6 86525 2fs3A 282 2.65e+01 1c3cA 429 2.72e+01 1c3cA a.127.1.1 19425 1rxqA 178 2.76e+01 a.213.1.1 105118 1nu7D 282 2.82e+01 a.8.6.1,a.8.6.1 92191,92192 1v71A 323 2.85e+01 2ahqA 76 2.87e+01 1colA 204 2.88e+01 1a87 f.1.1.1 43378 1px5A 349 2.89e+01 a.160.1.2,d.218.1.6 95277,95278 2bvlA 543 2.97e+01 2b1eA 564 3.01e+01 2fx0A 201 3.09e+01 2d8dA 90 3.12e+01 2ex0A 399 3.28e+01 1ofcX 304 3.33e+01 a.4.1.3,a.4.1.13,a.187.1.1 92826,92827,92828 1oxjA 173 3.39e+01 a.60.1.2,a.118.1.13 87517,87518 1vf7A 369 3.44e+01 f.46.1.1 108557 2db0A 253 3.52e+01 1w5fA 353 3.52e+01 1vqrA 297 3.57e+01 1m70A 190 3.58e+01 a.3.1.4,a.3.1.4 91200,91201 2b7aA 293 3.62e+01 1s9pA 227 3.62e+01 a.123.1.1 105384 1ho8A 480 3.65e+01 1ho8A a.118.1.9 61107 1uc2A 481 3.68e+01 d.261.1.1 99161 2bkrA 212 3.70e+01 1x93A 55 3.72e+01 2gmyA 153 3.75e+01 1k47A 337 3.79e+01 d.14.1.5,d.58.26.4 72040,72041 1b3uA 588 3.83e+01 1b3uA a.118.1.2 19135 2ap3A 199 3.86e+01 1xkgA 312 3.90e+01 1otvA 259 3.93e+01 a.132.1.4 93526 1j8mF 297 3.94e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 1nthA 458 3.96e+01 c.1.25.1 80730 1f60A 458 4.23e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 1yfsA 465 4.42e+01 2bptA 861 4.48e+01 1l8rA 101 4.50e+01 a.6.1.4 73700 1mkiA 330 4.56e+01 e.3.1.2 84994 1tcvA 287 4.57e+01 2basA 431 4.58e+01 1zkdA 387 4.60e+01 2b67A 204 4.62e+01 1e4iA 447 4.74e+01 1e70M c.1.8.4 59225 1bvoA 175 4.77e+01 1a3qA b.2.5.3 22457 1q5nA 454 4.82e+01 a.127.1.1 95901 1rvgA 305 4.93e+01 c.1.10.2 97920 1zk8A 183 4.95e+01 1wv2A 265 5.00e+01 1gw5A 621 5.03e+01 a.118.1.10 70629 1wmiA 90 5.05e+01 1hx1B 114 5.09e+01 1hx1B a.7.7.1 61350 1np3A 338 5.15e+01 a.100.1.2,c.2.1.6 85946,85947 1y74A 57 5.30e+01 1v4aA 440 5.35e+01 a.24.16.4,d.218.1.9 108350,108351 1vkmA 297 5.39e+01 c.138.1.1 108670 1fs1B 141 5.42e+01 1vcbB a.157.1.1,d.42.1.1 19252,38664 1a99A 344 5.45e+01 1pot c.94.1.1 35812 1oyzA 280 5.54e+01 a.118.1.16 93775 2cdnA 201 5.55e+01 1kblA 873 5.58e+01 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 1lmzA 187 5.66e+01 a.96.1.4 74037 1h3nA 878 5.70e+01 a.27.1.1,b.51.1.1,c.26.1.1 76641,76642,76643 1uhkA 191 5.73e+01 2cp8A 54 5.75e+01 1xffA 240 5.77e+01 d.153.1.1 109580 1r4gA 53 5.79e+01 a.8.5.1 96996 1dzlA 505 5.80e+01 1dzlA b.121.6.1 23586 1tn6A 382 5.85e+01 1winA 143 5.91e+01 1wkbA 810 5.98e+01 1xqrA 296 5.98e+01 2a14A 263 6.03e+01 1zw0A 66 6.07e+01 1jfbA 404 6.08e+01 a.104.1.1 66624 1u2pA 163 6.11e+01 1a32 88 6.11e+01 1a32 a.16.1.2 16384 2be4A 272 6.13e+01 2gdqA 382 6.14e+01 1uw4B 248 6.18e+01 a.118.1.14 100072 1t94A 459 6.18e+01 d.240.1.1,e.8.1.7 106701,106702 1ygmA 118 6.18e+01 1hw1A 239 6.20e+01 1e2xA a.4.5.6,a.78.1.1 16111,18441 1qmgA 524 6.22e+01 1qmgA a.100.1.2,c.2.1.6 18785,30182 1axn 323 6.22e+01 1avc a.65.1.1 18149 1jysA 242 6.24e+01 c.56.2.1 77216 1ub0A 258 6.25e+01 c.72.1.2 88394 2anxA 146 6.27e+01 1i12A 160 6.44e+01 1i21A d.108.1.1 61515 1n93X 375 6.50e+01 a.206.1.1 91707 1nc5A 373 6.52e+01 a.102.1.6 85548 1ash 150 6.55e+01 1ash a.1.1.2 15622 1rwtA 232 6.57e+01 f.43.1.1 97992 1jfzA 154 6.64e+01 a.149.1.1 66655 2awiA 317 6.64e+01 2bhwA 232 6.69e+01 1mp1A 111 6.71e+01 a.188.1.1 91382 1dowA 205 6.75e+01 1dovA a.24.9.1 16626 1u00A 227 6.75e+01 1sumB 235 6.81e+01 a.7.12.1 106025 1dkzA 219 6.83e+01 1dkzA a.8.4.1,b.130.1.1 90345,90346 1i4yA 114 6.91e+01 2mhr a.24.4.1 61738 1j3mA 129 6.91e+01 d.129.7.1 103836 1lniA 96 6.93e+01 d.1.1.2 74046 2g62A 325 7.00e+01 1dkiA 371 7.01e+01 1dkiA d.3.1.1 37090 1j77A 209 7.10e+01 1j77A a.132.1.2 62674 1aba 87 7.15e+01 1aba c.47.1.1 32760 1g4yB 101 7.18e+01 1g4yB f.15.1.1 60251 1guxB 152 7.18e+01 1guxB a.74.1.3 18389 1oltA 457 7.22e+01 c.1.28.2 93334 1v38A 78 7.34e+01 a.60.1.2 100280 1ss9A 311 7.42e+01 c.68.1.4 105978 1unlD 208 7.50e+01 1v7bA 185 7.50e+01 1eemA 241 7.51e+01 1eemA a.45.1.1,c.47.1.5 17717,33011 1e85A 127 7.52e+01 1bbhA a.24.3.2 16549 1pprM 312 7.79e+01 1pprM a.131.1.1,a.131.1.1 19502,19503 1qusA 322 7.83e+01 1ltm d.2.1.6 36991 3fapB 94 7.94e+01 1nsgB a.24.7.1 16612 1in6A 334 7.94e+01 1hqcA a.4.5.11,c.37.1.20 62601,62602 1siqA 392 7.99e+01 a.29.3.1,e.6.1.1 105585,105586 2b3wA 168 8.03e+01 2c12A 439 8.04e+01 1khyA 148 8.10e+01 a.174.1.1 77410 1wdcC 156 8.17e+01 1wdcC a.39.1.5 17317 1iab 200 8.19e+01 1iae d.92.1.8 40312 2cw9A 194 8.19e+01 1ct9A 553 8.20e+01 1ct9A c.26.2.1,d.153.1.1 31616,41834 1in4A 334 8.30e+01 1hqcA a.4.5.11,c.37.1.20 62597,62598 1j1jA 240 8.34e+01 a.118.16.1 90762 1qhlA 227 8.36e+01 1qhlA c.37.1.12 32382 1xo1A 291 8.43e+01 1exnA a.60.7.1,c.120.1.2 18086,33356 1zb1A 392 8.45e+01 1s3cA 141 8.45e+01 1n00A 321 8.48e+01 a.65.1.1 85241 1k92A 455 8.49e+01 c.26.2.1,d.210.1.1 68325,68326 1junA 44 8.53e+01 1junA h.1.3.1 45540 1ga8A 311 8.67e+01 1ga8A c.68.1.4 34516 1umdA 367 8.72e+01 c.36.1.11 99599 1m8jA 181 8.74e+01 c.26.1.3 84875 1m93B 245 8.79e+01 1uc7A 125 8.79e+01 c.47.1.1 99163 1jykA 254 8.81e+01 c.68.1.13 67458 1sheA 103 8.90e+01 d.274.1.1 105551 1nznA 126 8.94e+01 a.118.8.1 92382 1vf6C 72 8.95e+01 a.194.1.1 100602 2b5dX 528 8.96e+01