# List of top-scoring protein chains for t06-100-30-alpha-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 3gcb 470 1.28e-01 3gcb d.3.1.1 37032 1yyqA 374 9.17e-01 1zejA 293 1.00e+00 1ecmA 109 1.32e+00 1ecmA a.130.1.1 19492 1ry6A 360 1.32e+00 c.37.1.9 98090 1h3qA 140 1.36e+00 d.110.4.3 76652 1r1hA 696 1.69e+00 d.92.1.4 104756 2fx0A 201 1.70e+00 1f45B 197 1.86e+00 1f45B a.26.1.1 59642 1w33A 181 2.10e+00 1t3wA 148 2.67e+00 1b9uA 34 2.82e+00 1b9uA j.35.1.1 46260 1ll2A 333 3.01e+00 c.68.1.14 74005 1rp4A 389 3.20e+00 a.227.1.1 105027 1z5hA 780 3.40e+00 2dfkA 402 3.44e+00 3thiA 371 3.52e+00 2thiA c.94.1.1 35792 2b1eA 564 3.75e+00 1ow4A 129 4.03e+00 a.39.2.1 93628 1e5rA 290 4.31e+00 1e5rA b.82.2.4 59276 1gkpA 458 4.49e+00 b.92.1.3,c.1.9.6 70231,70232 1io7A 368 4.59e+00 1f4tA a.104.1.1 18971 1w5fA 353 4.64e+00 2grrB 170 5.06e+00 1q8fA 313 5.41e+00 c.70.1.1 96203 1e7lA 157 5.54e+00 1en7A a.140.4.1,d.4.1.5 64728,64729 1ofcX 304 6.00e+00 a.4.1.3,a.4.1.13,a.187.1.1 92826,92827,92828 1jnyA 435 6.17e+00 b.43.3.1,b.44.1.1,c.37.1.8 66982,66983,66984 2fbnA 198 6.39e+00 1jalA 363 6.80e+00 c.37.1.8,d.15.10.2 84138,84139 1uw4B 248 6.91e+00 a.118.1.14 100072 1ash 150 8.21e+00 1ash a.1.1.2 15622 1zs3A 182 8.60e+00 1g60A 260 8.63e+00 c.66.1.11 70151 2br9A 234 8.65e+00 2beqA 38 9.09e+00 1huxA 270 9.11e+00 1huxA c.55.1.5 61278 2gnoA 305 9.29e+00 1n8kA 374 9.54e+00 b.35.1.2,c.2.1.1 80298,80299 2b67A 204 1.01e+01 1paqA 189 1.04e+01 a.118.1.14 94413 2azjA 289 1.07e+01 1vkmA 297 1.17e+01 c.138.1.1 108670 1dkiA 371 1.22e+01 1dkiA d.3.1.1 37090 1wy2A 351 1.23e+01 1m32A 366 1.27e+01 c.67.1.3 78508 1siqA 392 1.29e+01 a.29.3.1,e.6.1.1 105585,105586 1h5uA 842 1.30e+01 1a8i c.87.1.4 60655 1o08A 221 1.32e+01 c.108.1.6 86525 1rw6A 210 1.33e+01 a.47.4.1 105113 2db0A 253 1.33e+01 1y7yA 74 1.36e+01 2a11A 242 1.40e+01 1hw1A 239 1.42e+01 1e2xA a.4.5.6,a.78.1.1 16111,18441 2end 138 1.44e+01 2end a.18.1.1 16400 2fnaA 357 1.44e+01 1axn 323 1.52e+01 1avc a.65.1.1 18149 1ej2A 181 1.54e+01 1f9aA c.26.1.3 59414 1wzdA 215 1.55e+01 1b5pA 385 1.55e+01 c.67.1.1 90403 1xx6A 191 1.57e+01 1t56A 216 1.64e+01 a.4.1.9,a.121.1.1 106428,106429 1f5nA 592 1.65e+01 1dg3A a.114.1.1,c.37.1.8 19077,32152 1kpsB 171 1.66e+01 a.118.12.1 68787 1vkeA 133 1.67e+01 a.152.1.2 108650 1w9gA 104 1.68e+01 2bptA 861 1.76e+01 1c3cA 429 1.76e+01 1c3cA a.127.1.1 19425 2c12A 439 1.77e+01 2bvfA 459 1.79e+01 2gdqA 382 1.80e+01 1iw0A 215 1.84e+01 a.132.1.1 83720 1oxjA 173 1.93e+01 a.60.1.2,a.118.1.13 87517,87518 2cdnA 201 2.11e+01 2ahqA 76 2.12e+01 1xteA 154 2.17e+01 1t94A 459 2.20e+01 d.240.1.1,e.8.1.7 106701,106702 1fs7A 485 2.28e+01 1qdbA a.138.1.3 19691 1wudA 89 2.29e+01 1u2pA 163 2.29e+01 1lehA 364 2.44e+01 1bw9A c.2.1.7,c.58.1.1 30268,33916 2bkrA 212 2.47e+01 1kqfC 217 2.48e+01 f.21.1.1 72874 1px5A 349 2.58e+01 a.160.1.2,d.218.1.6 95277,95278 1lqtA 456 2.63e+01 c.3.1.1,c.4.1.1 74198,74199 1x1nA 524 2.69e+01 2gmyA 153 2.69e+01 1m70A 190 2.72e+01 a.3.1.4,a.3.1.4 91200,91201 5eau 548 2.72e+01 5eat a.102.4.1,a.128.1.3 18851,19443 2g3kA 94 2.74e+01 1s9pA 227 2.75e+01 a.123.1.1 105384 1d9cA 121 2.75e+01 1d9cA a.26.1.3 16901 1mkiA 330 2.86e+01 e.3.1.2 84994 1tu7A 208 2.88e+01 1r0vA 305 2.95e+01 c.52.2.1,c.52.2.1,d.75.1.1 96742,96743,96744 2a35A 215 2.96e+01 1uc2A 481 2.98e+01 d.261.1.1 99161 1sur 215 2.98e+01 1sur c.26.2.2 31620 1d2zA 108 3.00e+01 1d2zA a.77.1.2 18437 1l8rA 101 3.00e+01 a.6.1.4 73700 1j77A 209 3.01e+01 1j77A a.132.1.2 62674 1ywmA 200 3.05e+01 1hyp 80 3.07e+01 1hyp a.52.1.1 17806 1tf0B 53 3.10e+01 a.8.1.2 106825 1m93B 245 3.15e+01 1jysA 242 3.18e+01 c.56.2.1 77216 1dxeA 256 3.33e+01 1dxeA c.1.12.5 29310 1nc5A 373 3.34e+01 a.102.1.6 85548 1j8mF 297 3.45e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 2gyqA 175 3.50e+01 1oyzA 280 3.53e+01 a.118.1.16 93775 1hu3A 260 3.54e+01 1hu3A a.118.1.14 19137 1uok 558 3.61e+01 1uok b.71.1.1,c.1.8.1 27801,28788 1yfsA 465 3.67e+01 1x46A 150 3.68e+01 1zb1A 392 3.73e+01 1pc3A 350 3.75e+01 c.94.1.1 104102 1sumB 235 3.77e+01 a.7.12.1 106025 1k47A 337 3.85e+01 d.14.1.5,d.58.26.4 72040,72041 2b5dX 528 3.88e+01 1s3cA 141 3.89e+01 1f60A 458 3.93e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 2b3hA 329 3.97e+01 2basA 431 3.99e+01 1zp4A 304 4.00e+01 2ex0A 399 4.06e+01 1xkgA 312 4.07e+01 1hx1B 114 4.10e+01 1hx1B a.7.7.1 61350 1qwlA 505 4.15e+01 e.5.1.1 96483 1z41A 338 4.17e+01 1dowA 205 4.26e+01 1dovA a.24.9.1 16626 1zu4A 320 4.28e+01 1rqjA 299 4.29e+01 a.128.1.1 97744 1w9cA 321 4.30e+01 1n00A 321 4.40e+01 a.65.1.1 85241 1x79B 112 4.44e+01 1wusA 180 4.48e+01 1xfhA 422 4.54e+01 1m8jA 181 4.57e+01 c.26.1.3 84875 1m7sA 484 4.58e+01 e.5.1.1 74574 1rcwA 231 4.59e+01 a.132.1.4 97299 1cpcA 162 4.69e+01 1cpcA a.1.1.3 15643 2bnlA 136 4.77e+01 2ap3A 199 4.79e+01 1wdcC 156 4.85e+01 1wdcC a.39.1.5 17317 1a32 88 4.89e+01 1a32 a.16.1.2 16384 1yisA 478 4.96e+01 1h3nA 878 4.97e+01 a.27.1.1,b.51.1.1,c.26.1.1 76641,76642,76643 1sa3A 262 4.98e+01 c.52.1.23 105400 1wmiA 90 4.98e+01 1lw7A 365 5.09e+01 c.26.1.3,c.37.1.1 74295,74296 1hz4A 373 5.14e+01 a.118.8.2 65960 1zk8A 183 5.18e+01 1fkmA 396 5.20e+01 1fkmA a.69.2.1,a.69.2.1 18315,18316 1vqrA 297 5.32e+01 1h3fA 432 5.33e+01 c.26.1.1,d.66.1.4 76631,76632 1j1jA 240 5.35e+01 a.118.16.1 90762 1gqiA 708 5.37e+01 c.1.8.10,d.92.2.2 76279,76280 1yrbA 262 5.47e+01 1ngnA 155 5.55e+01 a.96.1.2 85697 1ois 223 5.56e+01 1a36A e.15.1.1 43267 1ctqA 166 5.63e+01 1ctqA c.37.1.8 31965 2bhwA 232 5.64e+01 1oohA 126 5.69e+01 a.39.2.1 93383 1mp1A 111 5.74e+01 a.188.1.1 91382 1di1A 300 5.82e+01 1di1A a.128.1.4 19446 1dq3A 454 5.82e+01 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1tafA 68 5.91e+01 1tafA a.22.1.3 16481 1gntA 553 6.01e+01 e.26.1.1 70290 2chnA 716 6.02e+01 1ylmA 144 6.05e+01 1x93A 55 6.09e+01 1jf8A 131 6.15e+01 c.44.1.1 66621 2etsA 128 6.15e+01 1rq2A 382 6.29e+01 c.32.1.1,d.79.2.1 105048,105049 1po5A 476 6.30e+01 a.104.1.1 94963 2iugA 120 6.30e+01 1tzvA 142 6.31e+01 a.79.1.1 107526 1qgtA 149 6.32e+01 1qgtA a.62.1.1 18135 1dusA 194 6.37e+01 1dusA c.66.1.4 34182 1qhlA 227 6.37e+01 1qhlA c.37.1.12 32382 1i5nA 146 6.40e+01 1i5nA a.24.10.3 61805 1i6pA 220 6.45e+01 1ddzA c.53.2.1 61848 2evwX 166 6.45e+01 1cs0A 1073 6.49e+01 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18558,31487,31673,31674,41518,41519 1jkoC 52 6.54e+01 a.4.1.2 66809 1rvgA 305 6.57e+01 c.1.10.2 97920 1yw3A 208 6.64e+01 1vf7A 369 6.83e+01 f.46.1.1 108557 1wkqA 164 6.89e+01 c.97.1.2 109393 1a9xA 1058 6.89e+01 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18550,31479,31657,31658,41502,41503 1wwpA 119 6.93e+01 1dp4A 435 6.94e+01 1dp4A c.93.1.1 35710 1vf1A 229 6.95e+01 2bfdB 345 6.97e+01 1zkdA 387 7.06e+01 2rslA 140 7.09e+01 2rslA c.53.1.1 33345 1zghA 260 7.28e+01 1iznB 277 7.28e+01 e.43.1.2 83848 2ge3A 170 7.33e+01 1xxlA 239 7.38e+01 1jfbA 404 7.39e+01 a.104.1.1 66624 1dxy 333 7.47e+01 1dxy c.2.1.4,c.23.12.1 30094,31354 1o5kA 306 7.65e+01 c.1.10.1 92504 1w7jA 795 7.65e+01 1yyaA 250 7.70e+01 1jykA 254 7.71e+01 c.68.1.13 67458 1v93A 296 7.72e+01 c.1.23.1 100532 1xsvA 113 7.74e+01 2f94F 350 7.78e+01 1ug3A 339 7.80e+01 1ynpA 317 7.81e+01 1mo9A 523 7.96e+01 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343 2cw9A 194 8.02e+01 2b7aA 293 8.10e+01 1v7bA 185 8.12e+01 1o17A 345 8.13e+01 a.46.2.1,c.27.1.1 80765,80766 1exqA 154 8.14e+01 1b9dA c.55.3.2 33646 1x7yB 342 8.15e+01 1q5nA 454 8.15e+01 a.127.1.1 95901 1jpzA 473 8.16e+01 a.104.1.1 67069 1nt2B 258 8.16e+01 a.183.1.1 86150 1ei7A 158 8.29e+01 1rmvA a.24.5.1 16584 1jyeA 349 8.29e+01 c.93.1.1 67455 2gupA 292 8.35e+01 1jh6A 189 8.39e+01 d.61.1.1 66707 1pszA 303 8.59e+01 1toaA c.92.2.2 35600 1hdcA 253 8.59e+01 1e6wA c.2.1.2 29862 1sx7A 164 8.62e+01 2au3A 407 8.72e+01 1lmb3 92 8.79e+01 1lmb3 1s12A 94 8.83e+01 1e4iA 447 8.84e+01 1e70M c.1.8.4 59225 1e1oA 504 8.90e+01 1lylA b.40.4.1,d.104.1.1 25258,40714 1w2wA 211 8.96e+01 c.124.1.5 109130