# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1w33A 181 9.94e-02 1bm9A 122 1.04e+00 1bm9A a.4.5.7 16116 1vqoB 338 1.09e+00 1b5eA 246 1.25e+00 1b5eA d.117.1.1 41056 1f45B 197 1.27e+00 1f45B a.26.1.1 59642 1io7A 368 1.34e+00 1f4tA a.104.1.1 18971 1ej2A 181 2.56e+00 1f9aA c.26.1.3 59414 2iugA 120 2.57e+00 1k2eA 156 2.87e+00 d.113.1.1 72010 1m8jA 181 3.31e+00 c.26.1.3 84875 2fx0A 201 3.34e+00 1gw5A 621 5.48e+00 a.118.1.10 70629 1y74A 57 6.01e+00 1j6qA 136 6.15e+00 b.40.9.1 77091 1mnnA 340 6.31e+00 b.2.5.7 79324 1q8fA 313 7.03e+00 c.70.1.1 96203 1ll2A 333 7.07e+00 c.68.1.14 74005 1u5tB 169 8.30e+00 a.4.5.54,a.4.5.54 107686,107687 2ahqA 76 8.75e+00 1ho8A 480 9.76e+00 1ho8A a.118.1.9 61107 1xp8A 366 9.79e+00 1or7A 194 1.01e+01 a.4.13.2,a.177.1.1 87332,87333 1m45A 148 1.10e+01 a.39.1.5 78598 2aawA 222 1.15e+01 1r0vA 305 1.17e+01 c.52.2.1,c.52.2.1,d.75.1.1 96742,96743,96744 2cj4A 150 1.19e+01 1oktA 211 1.27e+01 a.45.1.1,c.47.1.5 93272,93273 2g3kA 94 1.35e+01 2etsA 128 1.43e+01 1sw5B 275 1.45e+01 c.94.1.1 106070 1tn6A 382 1.61e+01 1dusA 194 1.64e+01 1dusA c.66.1.4 34182 2eu9A 355 1.64e+01 1czfA 362 1.67e+01 1czfA b.80.1.3 28031 1ois 223 1.76e+01 1a36A e.15.1.1 43267 2bvfA 459 1.79e+01 1nw1A 429 1.89e+01 d.144.1.8 86286 1iyjB 817 1.91e+01 a.170.1.1,a.171.1.1,b.40.4.3,b.40.4.3,b.40.4.3 76948,76949,76950,76951,76952 2bw3A 534 2.03e+01 1sw5A 275 2.10e+01 c.94.1.1 106069 1d8hA 311 2.11e+01 1d8iA d.63.1.1 39544 1wr2A 238 2.18e+01 1mwqA 101 2.24e+01 d.58.4.7 91481 1c02A 166 2.28e+01 1qspA a.24.10.2 16633 2be4A 272 2.46e+01 2ar1A 172 2.54e+01 1ksoA 101 2.61e+01 a.39.1.2 72926 1l2mA 118 2.63e+01 d.89.1.4 77657 1lvfA 110 2.67e+01 a.47.2.1 74280 1xteA 154 2.70e+01 1xhcA 367 2.71e+01 1zatA 250 2.75e+01 1kjvB 100 2.85e+01 b.1.1.2 77423 1oz2A 331 2.89e+01 b.34.9.3,b.34.9.3,b.34.9.3 93781,93782,93783 1w7jA 795 2.93e+01 1qhdA 398 3.04e+01 1qhdA a.115.1.2,b.19.1.1 63324,63325 1szqA 483 3.05e+01 e.44.1.1 99045 1ry6A 360 3.11e+01 c.37.1.9 98090 1uxaA 194 3.17e+01 b.21.1.1 108091 1flcB 175 3.32e+01 1flcB h.3.1.1 45716 1b4fA 82 3.46e+01 1b4fA a.60.1.2 17934 2grrB 170 3.63e+01 1twfJ 70 3.73e+01 1fs7A 485 3.93e+01 1qdbA a.138.1.3 19691 1zavA 180 3.95e+01 2fo3A 125 3.96e+01 2daqA 110 4.04e+01 1irqA 71 4.08e+01 a.43.1.4 66297 1paqA 189 4.19e+01 a.118.1.14 94413 1r7mA 235 4.21e+01 1jvr 137 4.38e+01 1jvr a.61.1.2 18132 1oyzA 280 4.41e+01 a.118.1.16 93775 2rslA 140 4.49e+01 2rslA c.53.1.1 33345 1t3wA 148 4.59e+01 1n0lA 224 4.71e+01 b.1.11.1,b.7.2.1 79744,79745 1rw1A 114 4.73e+01 1fvuA 133 4.79e+01 1ixxB d.169.1.1 42345 1hfoA 113 4.81e+01 d.80.1.3 61006 1regX 122 4.83e+01 1regX d.58.27.1 39406 1ygmA 118 4.83e+01 1repC 251 4.87e+01 1repC a.4.5.10,a.4.5.10 16125,16126 1wudA 89 4.98e+01 2bl0C 142 5.11e+01 1uok 558 5.21e+01 1uok b.71.1.1,c.1.8.1 27801,28788 1r8eA 278 5.26e+01 a.6.1.3,d.60.1.1 104843,104844 1wkqA 164 5.32e+01 c.97.1.2 109393 2fauA 341 5.41e+01 1pbyA 489 5.50e+01 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 94417,94418,94419,94420,94421 1h03P 125 5.67e+01 g.18.1.1,g.18.1.1 83411,83412 1v30A 124 5.74e+01 1tzfA 259 5.75e+01 c.68.1.13 107476 1rrzA 86 5.83e+01 a.7.10.1 105086 1j4aA 333 5.86e+01 c.2.1.4,c.23.12.1 71502,71503 1jf8A 131 5.86e+01 c.44.1.1 66621 1j8mF 297 5.91e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 1y0gA 191 5.93e+01 2db0A 253 6.21e+01 1gz2A 142 6.24e+01 d.169.1.1 83392 2br9A 234 6.25e+01 1eu1A 780 6.52e+01 1dmr b.52.2.2,c.81.1.1 26903,35311 2g9zA 348 6.79e+01 1n4xH 120 6.91e+01 b.1.1.1 85324 2gmyA 153 7.00e+01 2bkrA 212 7.08e+01 1aba 87 7.18e+01 1aba c.47.1.1 32760 1jyoE 105 7.68e+01 d.184.1.2 67487 2hmzA 113 7.68e+01 2mhr a.24.4.1 16564 1ne8A 117 7.81e+01 b.34.6.2 80424 1x65A 89 7.84e+01 1jykA 254 8.05e+01 c.68.1.13 67458 1vggA 161 8.13e+01 1res 43 8.17e+01 1ret a.4.1.2 16023 1tns 76 8.18e+01 1qpmA a.6.1.7 16228 2end 138 8.19e+01 2end a.18.1.1 16400 1sflA 238 8.29e+01 1mp1A 111 8.35e+01 a.188.1.1 91382 1vqoM 195 8.46e+01 2fkkA 206 8.53e+01 1zs3A 182 8.54e+01 1txuA 273 8.58e+01 a.222.1.1 107439 1molA 94 8.97e+01 1molA d.17.1.1 37988 1dpe 507 8.98e+01 1dpe c.94.1.1 35799 1ywmA 200 8.99e+01