# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1de4C 640 7.91e-01 1cx8B a.48.2.1,c.8.4.1,c.56.5.5 17779,30760,33848 1gcb 454 9.38e-01 3gcb d.3.1.1 37034 3gcb 470 1.23e+00 3gcb d.3.1.1 37032 1f45B 197 1.55e+00 1f45B a.26.1.1 59642 1w33A 181 2.00e+00 1omwA 689 2.12e+00 a.91.1.1,b.55.1.1,d.144.1.7 87086,87087,87088 1v4eA 299 2.19e+00 a.128.1.1 100296 1dq3A 454 3.76e+00 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1ecmA 109 5.65e+00 1ecmA a.130.1.1 19492 1rtwA 220 5.89e+00 a.132.1.3 97823 2aelA 374 6.83e+00 1e2uA 553 6.90e+00 1e1dA e.26.1.1 43362 1gntA 553 6.90e+00 e.26.1.1 70290 1ciy 590 9.43e+00 1ciy b.18.1.3,b.77.2.1,f.1.3.1 23720,27977,43392 1rw6A 210 9.65e+00 a.47.4.1 105113 1ash 150 1.04e+01 1ash a.1.1.2 15622 2grrB 170 1.05e+01 1g7oA 215 1.05e+01 1g7oA a.45.1.1,c.47.1.5 60332,60333 1b3uA 588 1.10e+01 1b3uA a.118.1.2 19135 1e7lA 157 1.12e+01 1en7A a.140.4.1,d.4.1.5 64728,64729 2fx0A 201 1.12e+01 1t3wA 148 1.13e+01 1qgrA 876 1.13e+01 1qgrA a.118.1.1 19119 1wy1A 172 1.19e+01 1huxA 270 1.19e+01 1huxA c.55.1.5 61278 2fbnA 198 1.32e+01 1i5nA 146 1.33e+01 1i5nA a.24.10.3 61805 1pv9A 348 1.34e+01 c.55.2.1,d.127.1.1 95157,95158 2akaB 299 1.36e+01 1sz9A 144 1.38e+01 a.118.9.4 106139 1ewqA 765 1.40e+01 1ewqA a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 19069,32383,33740,39743 1au1A 166 1.41e+01 1ifa a.26.1.3 16889 1h3nA 878 1.57e+01 a.27.1.1,b.51.1.1,c.26.1.1 76641,76642,76643 1yyqA 374 1.66e+01 2ahqA 76 1.70e+01 1q8fA 313 1.71e+01 c.70.1.1 96203 1eg3A 261 1.71e+01 1eg3A a.39.1.7,a.39.1.7,b.72.1.1 17376,17377,27805 2gyqA 175 1.74e+01 1b9uA 34 1.81e+01 1b9uA j.35.1.1 46260 1mkiA 330 1.84e+01 e.3.1.2 84994 2bvfA 459 1.87e+01 1yv5A 374 1.87e+01 2f94F 350 1.93e+01 1h3qA 140 1.95e+01 d.110.4.3 76652 1kiyA 374 2.14e+01 a.128.1.5 72555 2gnoA 305 2.26e+01 1ow4A 129 2.36e+01 a.39.2.1 93628 1r1hA 696 2.41e+01 d.92.1.4 104756 1wn0A 145 2.49e+01 1dmtA 696 2.49e+01 1dmtA d.92.1.4 40296 1y1xA 191 2.50e+01 1m70A 190 2.54e+01 a.3.1.4,a.3.1.4 91200,91201 2beqA 38 2.57e+01 1keyA 235 2.78e+01 a.118.16.1 72389 1ohgA 282 2.81e+01 d.183.1.1 93018 1rxqA 178 2.87e+01 a.213.1.1 105118 1wdgA 94 2.96e+01 h.3.3.1 109248 1fiy 883 3.07e+01 1fiy c.1.12.3 29307 1wy2A 351 3.13e+01 1x1nA 524 3.17e+01 1dik 874 3.18e+01 1dik c.1.12.2,c.8.1.1,d.142.1.5 29304,30702,41572 2gdqA 382 3.19e+01 1ofcX 304 3.24e+01 a.4.1.3,a.4.1.13,a.187.1.1 92826,92827,92828 1yq7A 374 3.29e+01 1zs3A 182 3.32e+01 1xjeA 644 3.32e+01 1m32A 366 3.41e+01 c.67.1.3 78508 1g60A 260 3.45e+01 c.66.1.11 70151 1rcwA 231 3.55e+01 a.132.1.4 97299 1f60A 458 3.58e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 1z5hA 780 3.62e+01 2etdA 171 3.64e+01 1kblA 873 3.67e+01 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 1zgyA 272 3.68e+01 1fh6A 282 3.82e+01 1fh6A 2rslA 140 4.09e+01 2rslA c.53.1.1 33345 2b1eA 564 4.11e+01 2fs3A 282 4.12e+01 1vkeA 133 4.14e+01 a.152.1.2 108650 1xjjA 644 4.15e+01 1io7A 368 4.16e+01 1f4tA a.104.1.1 18971 2b2hA 399 4.20e+01 1paqA 189 4.22e+01 a.118.1.14 94413 1rvgA 305 4.32e+01 c.1.10.2 97920 1vqrA 297 4.34e+01 1dkiA 371 4.39e+01 1dkiA d.3.1.1 37090 1aisB 200 4.45e+01 1aisB a.74.1.2,a.74.1.2 18384,18385 2fnaA 357 4.51e+01 1wpoA 256 4.61e+01 1lay b.57.1.1 27012 1wtyA 119 4.68e+01 2d2mD 145 4.81e+01 1jnrA 643 4.94e+01 a.7.3.1,c.3.1.4,d.168.1.1 66966,66967,66968 1ll2A 333 4.96e+01 c.68.1.14 74005 1lqtA 456 5.10e+01 c.3.1.1,c.4.1.1 74198,74199 1xteA 154 5.18e+01 1yovA 537 5.23e+01 1bjwA 382 5.28e+01 1bjwA c.67.1.1 34349 1pz1A 333 5.34e+01 c.1.7.1 95390 2ge3A 170 5.38e+01 1oxjA 173 5.40e+01 a.60.1.2,a.118.1.13 87517,87518 1uroA 367 5.43e+01 1uroA c.1.22.1 29675 1b5pA 385 5.48e+01 c.67.1.1 90403 1eny 268 5.48e+01 1eny c.2.1.2 29910 1r3sA 367 5.51e+01 c.1.22.1 96963 1pbgA 468 5.53e+01 1e70M c.1.8.4 28946 2ex0A 399 5.56e+01 2fjbA 643 5.68e+01 2aq8A 269 5.85e+01 1em9A 154 5.85e+01 1d1dA a.73.1.1 18333 2dfkA 402 5.89e+01 1rtxA 123 5.92e+01 a.1.1.1 97827 1sumB 235 5.98e+01 a.7.12.1 106025 1a32 88 6.00e+01 1a32 a.16.1.2 16384 1oohA 126 6.09e+01 a.39.2.1 93383 1y7yA 74 6.20e+01 1orsC 132 6.20e+01 f.14.1.1 87353 1oo4A 111 6.32e+01 d.93.1.1 87185 1q5nA 454 6.38e+01 a.127.1.1 95901 1nc5A 373 6.40e+01 a.102.1.6 85548 2bkrA 212 6.48e+01 1y74A 57 6.49e+01 1jfbA 404 6.59e+01 a.104.1.1 66624 1nnwA 252 6.64e+01 d.159.1.5 80674 1uok 558 6.67e+01 1uok b.71.1.1,c.1.8.1 27801,28788 1jj2B 337 6.72e+01 1ffkB b.43.3.2 63086 1s72B 338 6.72e+01 b.43.3.2 105320 1f24A 402 6.87e+01 1rom a.104.1.1 18953 1k1xA 659 6.87e+01 a.8.3.2,b.30.5.8,c.6.2.2 84279,84280,84281 1wmiA 90 6.98e+01 1j8yF 297 7.12e+01 1ng1 a.24.13.1,c.37.1.10 62747,62748 1zb1A 392 7.16e+01 2azqA 311 7.22e+01 1j8mF 297 7.23e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 1m1nA 491 7.27e+01 c.92.2.3 78417 1r0vA 305 7.37e+01 c.52.2.1,c.52.2.1,d.75.1.1 96742,96743,96744 1jalA 363 7.40e+01 c.37.1.8,d.15.10.2 84138,84139 2b69A 343 7.43e+01 2awiA 317 7.44e+01 1t06A 235 7.45e+01 a.118.1.17 106194 1hyp 80 7.46e+01 1hyp a.52.1.1 17806 1x79B 112 7.49e+01 1h6zA 913 7.73e+01 c.1.12.2,c.8.1.1,d.142.1.5 70906,70907,70908 1oglA 283 7.74e+01 a.204.1.1 92922 2chnA 716 7.75e+01 2ap3A 199 7.78e+01 1wleA 501 7.84e+01 1xkgA 312 8.10e+01 1xt9A 212 8.36e+01 1vqoB 338 8.36e+01 1g4wR 383 8.45e+01 1g4uS a.24.11.1,c.45.1.2 16644,32692 1j5pA 253 8.45e+01 d.81.1.3,c.2.1.3 71577,83092 1yxcA 292 8.49e+01 1b8dA 164 8.49e+01 1cpcA a.1.1.3 15665 2au3A 407 8.57e+01 1e3pA 757 8.60e+01 1e3hA a.4.9.1,b.40.4.5,d.14.1.4,d.14.1.4,d.52.3.1,d.101.1.1,d.101.1.1 16258,25328,37574,37575,38811,40697,40698 1px5A 349 8.62e+01 a.160.1.2,d.218.1.6 95277,95278 1s9pA 227 8.65e+01 a.123.1.1 105384 1kpsB 171 8.72e+01 a.118.12.1 68787 2a6lA 292 8.80e+01 1ss9A 311 8.88e+01 c.68.1.4 105978 1w5fA 353 8.91e+01 2a6nA 292 8.93e+01 1ass 159 8.98e+01 1a6dA c.8.5.2 30818