# List of top-scoring protein chains for t04-100-30-alpha-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1b9uA 34 1.52e+00 1b9uA j.35.1.1 46260 1de4C 640 1.74e+00 1cx8B a.48.2.1,c.8.4.1,c.56.5.5 17779,30760,33848 1t3wA 148 2.07e+00 1zejA 293 2.19e+00 1r1hA 696 2.30e+00 d.92.1.4 104756 1f45B 197 2.91e+00 1f45B a.26.1.1 59642 2b1eA 564 3.18e+00 2fx0A 201 3.18e+00 1w33A 181 3.30e+00 1pv9A 348 3.54e+00 c.55.2.1,d.127.1.1 95157,95158 1z5hA 780 3.77e+00 1v4eA 299 3.82e+00 a.128.1.1 100296 1au1A 166 3.84e+00 1ifa a.26.1.3 16889 1ll2A 333 3.88e+00 c.68.1.14 74005 2dfkA 402 3.98e+00 1e5rA 290 4.51e+00 1e5rA b.82.2.4 59276 2end 138 5.34e+00 2end a.18.1.1 16400 3gcb 470 5.61e+00 3gcb d.3.1.1 37032 1ry6A 360 5.61e+00 c.37.1.9 98090 1wy2A 351 5.63e+00 1dmtA 696 5.99e+00 1dmtA d.92.1.4 40296 1yyqA 374 6.24e+00 1e7lA 157 6.58e+00 1en7A a.140.4.1,d.4.1.5 64728,64729 2fbnA 198 7.12e+00 2br9A 234 7.98e+00 1ecmA 109 9.06e+00 1ecmA a.130.1.1 19492 2beqA 38 9.80e+00 1yyaA 250 1.04e+01 1c3cA 429 1.05e+01 1c3cA a.127.1.1 19425 1kiyA 374 1.07e+01 a.128.1.5 72555 1g60A 260 1.07e+01 c.66.1.11 70151 2db0A 253 1.08e+01 1bjwA 382 1.10e+01 1bjwA c.67.1.1 34349 1rqjA 299 1.14e+01 a.128.1.1 97744 1io7A 368 1.16e+01 1f4tA a.104.1.1 18971 1h3qA 140 1.18e+01 d.110.4.3 76652 2aelA 374 1.19e+01 1wdgA 94 1.21e+01 h.3.3.1 109248 1m32A 366 1.30e+01 c.67.1.3 78508 2grrB 170 1.33e+01 1rw6A 210 1.35e+01 a.47.4.1 105113 1oglA 283 1.37e+01 a.204.1.1 92922 1ciy 590 1.42e+01 1ciy b.18.1.3,b.77.2.1,f.1.3.1 23720,27977,43392 1b5pA 385 1.50e+01 c.67.1.1 90403 1hw1A 239 1.51e+01 1e2xA a.4.5.6,a.78.1.1 16111,18441 1nx8A 273 1.62e+01 b.82.2.8 86374 1gcb 454 1.69e+01 3gcb d.3.1.1 37034 2a11A 242 1.74e+01 1rp4A 389 1.84e+01 a.227.1.1 105027 2b67A 204 1.85e+01 1y7yA 74 1.88e+01 1xx6A 191 1.93e+01 1v71A 323 1.93e+01 2g3kA 94 1.93e+01 1jnyA 435 1.97e+01 b.43.3.1,b.44.1.1,c.37.1.8 66982,66983,66984 1j8mF 297 2.02e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 1ej2A 181 2.03e+01 1f9aA c.26.1.3 59414 3thiA 371 2.06e+01 2thiA c.94.1.1 35792 1f1zA 273 2.08e+01 1f1zA a.4.5.27,c.52.1.16 16081,33334 1lqtA 456 2.09e+01 c.3.1.1,c.4.1.1 74198,74199 1axn 323 2.10e+01 1avc a.65.1.1 18149 1m70A 190 2.17e+01 a.3.1.4,a.3.1.4 91200,91201 1keyA 235 2.20e+01 a.118.16.1 72389 1paqA 189 2.22e+01 a.118.1.14 94413 1ef1A 294 2.24e+01 1ef1A a.11.2.1,b.55.1.5,d.15.1.4 16368,27003,37611 1tu7A 208 2.27e+01 1a8i 842 2.33e+01 1a8i c.87.1.4 35490 1r0vA 305 2.39e+01 c.52.2.1,c.52.2.1,d.75.1.1 96742,96743,96744 2c12A 439 2.39e+01 1ow4A 129 2.42e+01 a.39.2.1 93628 2ap3A 199 2.46e+01 1t0fA 276 2.46e+01 1h5uA 842 2.50e+01 1a8i c.87.1.4 60655 1zs3A 182 2.55e+01 1jalA 363 2.58e+01 c.37.1.8,d.15.10.2 84138,84139 1xteA 154 2.60e+01 2rslA 140 2.64e+01 2rslA c.53.1.1 33345 1o08A 221 2.67e+01 c.108.1.6 86525 1ois 223 2.75e+01 1a36A e.15.1.1 43267 1q8fA 313 2.76e+01 c.70.1.1 96203 1j8yF 297 2.82e+01 1ng1 a.24.13.1,c.37.1.10 62747,62748 2ab5A 269 2.82e+01 1j0aA 325 2.85e+01 c.79.1.1 83871 1wn0A 145 3.14e+01 1fs7A 485 3.19e+01 1qdbA a.138.1.3 19691 1cktA 71 3.20e+01 1cktA a.21.1.1 16417 1ofcX 304 3.26e+01 a.4.1.3,a.4.1.13,a.187.1.1 92826,92827,92828 1uw4B 248 3.27e+01 a.118.1.14 100072 1wmiA 90 3.29e+01 1w5fA 353 3.30e+01 1xkgA 312 3.40e+01 1w9gA 104 3.44e+01 2gdqA 382 3.49e+01 1wudA 89 3.55e+01 2iugA 120 3.61e+01 1ywmA 200 3.63e+01 1sur 215 3.65e+01 1sur c.26.2.2 31620 1uc2A 481 3.68e+01 d.261.1.1 99161 1f5nA 592 3.72e+01 1dg3A a.114.1.1,c.37.1.8 19077,32152 2gnoA 305 3.80e+01 1jysA 242 3.83e+01 c.56.2.1 77216 1wchA 315 3.91e+01 1e2uA 553 3.97e+01 1e1dA e.26.1.1 43362 1eq7A 56 3.98e+01 1eq7A h.1.16.1 45655 1px5A 349 4.02e+01 a.160.1.2,d.218.1.6 95277,95278 1y1xA 191 4.03e+01 1m93B 245 4.12e+01 1tvzA 388 4.13e+01 c.95.1.2,c.95.1.2 107367,107368 2bkrA 212 4.14e+01 2bkqA 212 4.16e+01 2gyqA 175 4.18e+01 1vkeA 133 4.29e+01 a.152.1.2 108650 1hdcA 253 4.30e+01 1e6wA c.2.1.2 29862 1pc3A 350 4.33e+01 c.94.1.1 104102 5eau 548 4.37e+01 5eat a.102.4.1,a.128.1.3 18851,19443 1dq3A 454 4.39e+01 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 2bzpA 226 4.40e+01 1ut8A 291 4.41e+01 a.60.7.1,c.120.1.2 99908,99909 1vkmA 297 4.46e+01 c.138.1.1 108670 1mkiA 330 4.50e+01 e.3.1.2 84994 1e4iA 447 4.57e+01 1e70M c.1.8.4 59225 2gmyA 153 4.61e+01 1d9cA 121 4.67e+01 1d9cA a.26.1.3 16901 1wzdA 215 4.71e+01 1tf0B 53 4.74e+01 a.8.1.2 106825 1zu4A 320 4.74e+01 1umdA 367 4.81e+01 c.36.1.11 99599 1iw0A 215 4.82e+01 a.132.1.1 83720 1s9pA 227 4.86e+01 a.123.1.1 105384 1eemA 241 4.93e+01 1eemA a.45.1.1,c.47.1.5 17717,33011 1ass 159 4.94e+01 1a6dA c.8.5.2 30818 1cpcA 162 4.95e+01 1cpcA a.1.1.3 15643 1wz7A 111 4.96e+01 2bptA 861 5.13e+01 1dkiA 371 5.13e+01 1dkiA d.3.1.1 37090 2ahqA 76 5.23e+01 1z41A 338 5.25e+01 1x79B 112 5.33e+01 1g5gA 481 5.50e+01 f.12.1.1,h.3.2.1 65155,65156 1ash 150 5.51e+01 1ash a.1.1.2 15622 1rlzA 369 5.53e+01 c.31.1.1 104989 1wtyA 119 5.57e+01 2fnaA 357 5.59e+01 1tafA 68 5.60e+01 1tafA a.22.1.3 16481 1cs0A 1073 5.71e+01 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18558,31487,31673,31674,41518,41519 2azjA 289 5.76e+01 2a35A 215 5.80e+01 2ge3A 170 5.80e+01 2basA 431 5.81e+01 1dp4A 435 5.83e+01 1dp4A c.93.1.1 35710 1huxA 270 5.84e+01 1huxA c.55.1.5 61278 1vm8A 534 5.84e+01 1mp1A 111 5.86e+01 a.188.1.1 91382 1omwA 689 5.87e+01 a.91.1.1,b.55.1.1,d.144.1.7 87086,87087,87088 2b3oA 532 5.94e+01 1dxeA 256 5.95e+01 1dxeA c.1.12.5 29310 1kpsB 171 5.97e+01 a.118.12.1 68787 2chnA 716 5.98e+01 1dvkA 173 6.01e+01 1dvkA a.72.1.1 18319 1k1xA 659 6.03e+01 a.8.3.2,b.30.5.8,c.6.2.2 84279,84280,84281 1uok 558 6.03e+01 1uok b.71.1.1,c.1.8.1 27801,28788 1h3nA 878 6.06e+01 a.27.1.1,b.51.1.1,c.26.1.1 76641,76642,76643 1nc5A 373 6.08e+01 a.102.1.6 85548 1j77A 209 6.11e+01 1j77A a.132.1.2 62674 1u2pA 163 6.13e+01 1ynpA 317 6.18e+01 2bvfA 459 6.27e+01 1fsiA 189 6.35e+01 1fsiA d.61.1.1 39536 2bnlA 136 6.41e+01 1foeA 377 6.41e+01 1foeA a.87.1.1,b.55.1.1 18517,26969 1a9xA 1058 6.44e+01 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18550,31479,31657,31658,41502,41503 2bvlA 543 6.56e+01 2prd 174 6.65e+01 2prd b.40.5.1 25435 1mo9A 523 6.75e+01 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343 2astA 159 6.79e+01 2ex0A 399 6.93e+01 2b3hA 329 6.95e+01 1i5nA 146 7.00e+01 1i5nA a.24.10.3 61805 1gkpA 458 7.01e+01 b.92.1.3,c.1.9.6 70231,70232 1lehA 364 7.10e+01 1bw9A c.2.1.7,c.58.1.1 30268,33916 1i9sA 210 7.15e+01 1i9sA c.45.1.1 62099 2bfdB 345 7.43e+01 1y74A 57 7.47e+01 1ctqA 166 7.49e+01 1ctqA c.37.1.8 31965 1w7jA 795 7.73e+01 1xo1A 291 7.75e+01 1exnA a.60.7.1,c.120.1.2 18086,33356 1gt1A 159 7.78e+01 b.60.1.1 90515 1gq6A 313 7.85e+01 c.42.1.1 70341 1yoyA 175 7.96e+01 1di1A 300 7.97e+01 1di1A a.128.1.4 19446 1i6pA 220 8.04e+01 1ddzA c.53.2.1 61848 1hu3A 260 8.15e+01 1hu3A a.118.1.14 19137 119l 164 8.20e+01 1l92 d.2.1.3 36622 1j1jA 240 8.20e+01 a.118.16.1 90762 2evwX 166 8.21e+01 1qgtA 149 8.22e+01 1qgtA a.62.1.1 18135 1gntA 553 8.31e+01 e.26.1.1 70290 1m5wA 243 8.35e+01 c.1.24.1 84836 1xt9A 212 8.44e+01 1v1rB 342 8.47e+01 c.36.1.7,c.48.1.2 108273,108274 2azqA 311 8.48e+01 1jh6A 189 8.57e+01 d.61.1.1 66707 1yovA 537 8.73e+01 1wdcC 156 8.76e+01 1wdcC a.39.1.5 17317 2shpA 525 8.78e+01 2shpA c.45.1.2,d.93.1.1,d.93.1.1 32683,40533,40534 1m8jA 181 8.88e+01 c.26.1.3 84875 1xpkC 388 8.90e+01