# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1dvoA 152 3.53e-16 1dvoA a.136.1.1 19623 1z1dA 103 6.56e-01 1sknP 92 1.52e+00 1sknP a.37.1.1 17127 1pmzA 86 1.53e+00 a.39.1.10 104195 2fswA 107 1.53e+00 2c8mA 262 1.57e+00 1v3wA 173 1.86e+00 b.81.1.5 100291 1yr2A 741 1.88e+00 1vjpA 394 2.39e+00 c.2.1.3,d.81.1.3 100828,100829 1txdA 385 2.49e+00 a.87.1.1,b.55.1.1 107422,107423 2cxxA 190 2.83e+00 1usyA 275 3.02e+00 1ucrA 78 3.08e+00 a.4.5.45 99188 1o9gA 250 3.27e+00 c.66.1.29 86692 1wrvA 308 3.33e+00 1x8bA 289 3.33e+00 1z5hA 780 3.46e+00 2ffsA 157 3.67e+00 1p4cA 380 3.86e+00 c.1.4.1 94100 1tca 317 4.48e+00 1tca c.69.1.17 34726 1w0mA 226 4.68e+00 c.1.1.1 109027 1qsgA 265 4.93e+00 1eny c.2.1.2 29935 1hlvA 131 5.10e+00 a.4.1.7,a.4.1.7 65854,65855 2ck3G 272 5.34e+00 1o5zA 442 5.56e+00 c.59.1.2,c.72.2.2 92530,92531 1k9uA 78 5.57e+00 a.39.1.10 84348 1apyB 141 5.70e+00 1apyB 1xknA 355 5.76e+00 1umnA 165 5.77e+00 a.25.1.1 99607 1mzbA 136 5.92e+00 a.4.5.42 91497 1x3kA 152 6.04e+00 2apoA 357 6.34e+00 2cybA 323 6.43e+00 1s4bP 674 6.52e+00 d.92.1.5 105252 1zupA 315 6.73e+00 2av5A 120 7.53e+00 2dafA 118 7.86e+00 1f53A 84 7.91e+00 1f53A b.11.1.4 23632 1vp7A 100 8.59e+00 1oxwA 373 8.74e+00 c.19.1.3 87539 1njhA 119 8.79e+00 b.128.1.1 85787 2fu4A 83 9.29e+00 1n62C 288 9.51e+00 d.87.2.1,d.145.1.3 80094,80095 1odfA 290 9.84e+00 c.37.1.6 92782 1no1A 126 1.16e+01 a.179.1.1 85913 1zy9A 564 1.20e+01 1v54E 109 1.20e+01 a.118.11.1 100326 1uj8A 77 1.25e+01 2g39A 497 1.25e+01 2acvA 463 1.27e+01 2ffcA 353 1.29e+01 2af4C 333 1.30e+01 1gbs 185 1.32e+01 153l d.2.1.5 36986 1k94A 165 1.37e+01 a.39.1.8 68333 1owcA 427 1.40e+01 a.103.1.1 104039 1iscA 192 1.51e+01 1avmA a.2.11.1,d.44.1.1 15733,38726 1qhfA 240 1.53e+01 1qhfA c.60.1.1 33960 1s95A 333 1.58e+01 d.159.1.3 105375 1v71A 323 1.60e+01 1sglA 209 1.61e+01 d.124.1.1 105536 1s9rA 410 1.61e+01 d.126.1.4 98758 1pme 380 1.62e+01 1hcl d.144.1.7 41653 1z7aA 308 1.62e+01 1rl0A 255 1.64e+01 1pbjA 125 1.70e+01 d.37.1.1,d.37.1.1 94414,94415 1h8eG 272 1.79e+01 1e79G c.49.2.1 60756 1yb3A 175 1.87e+01 1vlrA 350 1.97e+01 d.13.1.3,d.246.1.1 108860,108861 1tz9A 367 2.19e+01 c.1.15.6 107466 1vqoX 92 2.25e+01 2bycA 137 2.37e+01 2a7kA 250 2.50e+01 1ov9A 50 2.53e+01 a.155.1.1 93591 1fjgI 128 2.56e+01 1fjfI d.14.1.1 37559 1yirA 408 2.56e+01 2b0aA 186 2.63e+01 1ub9A 100 2.64e+01 a.4.5.28 99159 1zzmA 259 2.66e+01 1sz2A 332 2.67e+01 2cs7A 55 2.70e+01 1nm8A 616 2.70e+01 c.43.1.3,c.43.1.3 85872,85873 1w33A 181 2.71e+01 1vqoC 246 2.73e+01 1m4lA 307 2.79e+01 c.56.5.1 78604 2fazA 78 2.80e+01 2cwxA 430 2.94e+01 1f5nA 592 2.95e+01 1dg3A a.114.1.1,c.37.1.8 19077,32152 1u8xX 472 3.00e+01 c.2.1.5,d.162.1.2 107741,107742 1te2A 226 3.04e+01 c.108.1.6 106792 1hyp 80 3.05e+01 1hyp a.52.1.1 17806 1yyqA 374 3.05e+01 1pa7A 130 3.08e+01 a.40.1.1 94410 1yp2A 451 3.10e+01 1v4xB 146 3.24e+01 a.1.1.2 108364 1q77A 138 3.24e+01 c.26.2.4 96023 1j2jB 45 3.27e+01 a.7.8.1 84017 1rkuA 206 3.29e+01 c.108.1.11 97627 1hw1A 239 3.32e+01 1e2xA a.4.5.6,a.78.1.1 16111,18441 1jksA 294 3.32e+01 d.144.1.7 71710 2ae2A 260 3.36e+01 1bdb c.2.1.2 29945 1xg8A 111 3.39e+01 1a7tA 232 3.40e+01 1a7tA d.157.1.1 42041 1qj4A 257 3.42e+01 1qj4A c.69.1.20 34796 1dowA 205 3.42e+01 1dovA a.24.9.1 16626 2b5hA 200 3.43e+01 1ztcA 221 3.46e+01 1w9gA 104 3.46e+01 1m5q1 130 3.49e+01 1w4tA 299 3.54e+01 1s4kA 120 3.70e+01 a.35.1.6 105254 2au3A 407 3.78e+01 1xppA 115 3.81e+01 1xkpA 246 3.85e+01 1jl0A 334 3.90e+01 1jenA d.156.1.1 63155 1dqaA 467 3.94e+01 1dqaA d.58.20.1,d.179.1.1 39364,42585 1vk9A 151 3.94e+01 c.139.1.1 108640 2b5gA 171 4.02e+01 2g0wA 296 4.02e+01 1nz0A 118 4.04e+01 d.14.1.2 86433 1sauA 115 4.06e+01 1vjgA 218 4.08e+01 c.23.10.6 100810 1wrrA 301 4.13e+01 1vlpA 441 4.25e+01 d.41.2.2,d.41.2.3 108840,108841 1r3eA 309 4.35e+01 b.122.1.1,d.265.1.2 96907,96908 1u84A 90 4.40e+01 2bjqA 345 4.43e+01 1ituA 369 4.45e+01 c.1.9.7 71423 1njrA 284 4.49e+01 c.50.1.2 103858 1yf3A 259 4.55e+01 1o4vA 183 4.60e+01 c.23.8.1 86628 1v84A 253 4.69e+01 c.68.1.7 108419 1tfr 305 4.79e+01 1tfr a.60.7.1,c.120.1.2 18081,33351 2d2yA 145 4.87e+01 1n82A 331 4.88e+01 c.1.8.3 91703 1pgvA 197 4.89e+01 c.10.1.1 88073 1yacA 208 4.98e+01 1yacA c.33.1.3 31757 1tujA 123 5.01e+01 1ef8A 261 5.02e+01 1ef8A c.14.1.3 30921 1tp6A 128 5.05e+01 d.17.4.12 107184 1shuX 182 5.06e+01 c.62.1.1 98882 2ch9A 131 5.12e+01 1cpcA 162 5.14e+01 1cpcA a.1.1.3 15643 1ed1A 135 5.34e+01 1hiwA a.61.1.1 18130 1gjwA 637 5.48e+01 b.71.1.1,c.1.8.1 60582,60583 1aihA 170 5.59e+01 1aihA d.163.1.1 42149 1vkuA 100 5.67e+01 a.28.1.1 108690 1or4A 178 5.76e+01 a.1.1.2 93447 8tlnE 316 5.81e+01 1hyt d.92.1.2 59075 1zkrA 153 5.96e+01 2d69A 430 5.99e+01 1iqqA 200 6.11e+01 d.124.1.1 66274 2fggA 101 6.24e+01 1v77A 212 6.25e+01 c.6.3.2 108402 1kq6A 141 6.31e+01 d.189.1.1 91020 1jk7A 323 6.39e+01 1auiA d.159.1.3 63144 1vliA 385 6.45e+01 b.85.1.1,c.1.10.6 108830,108831 1ayl 541 6.63e+01 1ayl c.91.1.1,c.109.1.1 64718,64719 1yf9A 171 6.64e+01 1h2sA 225 6.72e+01 f.13.1.1 76578 1dkmA 410 6.82e+01 1dklA c.60.1.2 34000 1w5rA 278 6.90e+01 1zkjA 359 6.90e+01 1zosA 230 7.01e+01 1ab8A 220 7.14e+01 1azsA d.58.29.1 39414 2pth 193 7.16e+01 2pth c.56.3.1 33793 1t2dA 322 7.21e+01 c.2.1.5,d.162.1.1 99084,99085 1i1rB 181 7.21e+01 1i1rB a.26.1.1 61548 1aa6 715 7.21e+01 2napA b.52.2.2,c.81.1.1 26916,35324 2bgcA 238 7.22e+01 1ppjJ 62 7.23e+01 f.23.14.1 104266 1kyhA 276 7.25e+01 c.72.1.4 73222 1usmA 80 7.30e+01 d.74.1.1 99876 5pal 109 7.31e+01 1a75A a.39.1.4 17215 1t82A 155 7.33e+01 d.38.1.5 106639 1ti6A 875 7.47e+01 b.52.2.2,c.81.1.1 106974,106975 1sgmA 191 7.49e+01 a.4.1.9,a.121.1.1 105537,105538 1yqdA 366 7.64e+01 1llfA 534 7.78e+01 c.69.1.17 78094 1thg 544 7.78e+01 1thg c.69.1.17 34763 1ve3A 227 7.80e+01 1sfe 180 7.88e+01 1sfe a.4.2.1,c.55.7.1 16073,33748 1ii7A 333 7.91e+01 1ii7A d.159.1.4 62415 1puoA 170 7.94e+01 a.101.1.1,a.101.1.1 95134,95135 1tdpA 111 7.94e+01 a.29.8.1 106781 1whuA 104 7.99e+01 1pufB 73 8.03e+01 a.4.1.1 95132 1czaN 917 8.04e+01 1qhaA c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3 33463,33464,33465,33466 1gx3A 284 8.07e+01 d.3.1.5 70678 2napA 723 8.14e+01 2napA b.52.2.2,c.81.1.1 26926,35334 1g1xC 88 8.17e+01 1fjfR a.4.8.1 16249 1nu4A 97 8.23e+01 d.58.7.1 80731 2cklA 108 8.27e+01 1mba 147 8.28e+01 2fal a.1.1.2 15149 1yo3A 102 8.34e+01 2gmyA 153 8.38e+01 1u55A 188 8.52e+01 d.278.1.1 107677 1swxA 209 8.59e+01 a.224.1.1 106075 1pcxA 810 8.65e+01 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 94497,94498,94499,94500,94501 1vc3B 97 8.67e+01 1iybA 208 8.71e+01 d.124.1.1 90720 1dkqA 410 8.73e+01 1dklA c.60.1.2 33998 1wbeA 209 8.87e+01 1azsA 220 8.88e+01 1azsA d.58.29.1 39416 2gsfA 373 8.89e+01 1bg4 302 8.97e+01 1taxA c.1.8.3 28806 1u4bA 580 8.97e+01 c.55.3.5,e.8.1.1 107664,107665 1us0A 316 9.00e+01 c.1.7.1 99850