# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1dvoA 152 2.00e-15 1dvoA a.136.1.1 19623 1ve3A 227 1.28e+00 2gyqA 175 1.36e+00 1yumA 242 1.90e+00 1usyA 275 2.80e+00 1sgmA 191 3.36e+00 a.4.1.9,a.121.1.1 105537,105538 1iscA 192 3.56e+00 1avmA a.2.11.1,d.44.1.1 15733,38726 1v7cA 351 3.69e+00 c.79.1.1 100446 1wyuB 474 3.96e+00 1ki1B 352 4.11e+00 a.87.1.1,b.55.1.1 72497,72498 1nekD 115 4.11e+00 f.21.2.2 80432 1uj8A 77 4.17e+00 1apyB 141 4.54e+00 1apyB 2bnxA 386 4.66e+00 1i0dA 332 4.70e+00 1pscA c.1.9.3 61487 1mzbA 136 4.78e+00 a.4.5.42 91497 1wdcB 156 4.85e+00 1wdcB a.39.1.5 17302 1kk8B 139 4.88e+00 a.39.1.5 77430 1vqoC 246 4.98e+00 1v4xB 146 5.48e+00 a.1.1.2 108364 1efyA 350 5.74e+00 1a26 a.41.1.1,d.166.1.2 17413,42275 1z1dA 103 6.01e+00 1llfA 534 6.16e+00 c.69.1.17 78094 1svfB 38 6.51e+00 1svfB h.3.2.1 45764 1v3wA 173 7.92e+00 b.81.1.5 100291 1txdA 385 8.71e+00 a.87.1.1,b.55.1.1 107422,107423 2fswA 107 9.49e+00 1zupA 315 9.54e+00 1z5hA 780 1.02e+01 2fokA 579 1.05e+01 2fokA a.4.5.12,a.4.5.12,a.4.5.12,c.52.1.12 16131,16132,16133,33323 1w0mA 226 1.07e+01 c.1.1.1 109027 1tdpA 111 1.09e+01 a.29.8.1 106781 1zx0A 236 1.14e+01 2bk9A 153 1.14e+01 1paqA 189 1.17e+01 a.118.1.14 94413 1u2zA 433 1.17e+01 c.66.1.31 107626 2ffsA 157 1.18e+01 1x8bA 289 1.18e+01 2gsfA 373 1.21e+01 1d9cA 121 1.22e+01 1d9cA a.26.1.3 16901 1qhtA 775 1.24e+01 1tgoA c.55.3.5,e.8.1.1 33722,43011 2acvA 463 1.26e+01 1z8sA 146 1.27e+01 1my6A 199 1.29e+01 a.2.11.1,d.44.1.1 85232,85233 1ockA 412 1.31e+01 c.117.1.1 86802 1w33A 181 1.35e+01 1wa5C 960 1.36e+01 1me8A 503 1.41e+01 c.1.5.1 79028 2es4D 332 1.42e+01 1t6sA 162 1.43e+01 1jp4A 308 1.57e+01 1jp4A e.7.1.1 63223 1q5dA 419 1.58e+01 a.104.1.1 95891 1n00A 321 1.63e+01 a.65.1.1 85241 1ufbA 127 1.65e+01 a.24.16.3 99331 1w61A 414 1.67e+01 1gvkB 240 1.68e+01 b.47.1.2 70610 1lv7A 257 1.75e+01 c.37.1.20 78232 1wixA 164 1.77e+01 8tlnE 316 1.77e+01 1hyt d.92.1.2 59075 2db9A 149 1.82e+01 3pviA 157 2.00e+01 3pviA c.52.1.6 33300 1zzmA 259 2.04e+01 1f53A 84 2.20e+01 1f53A b.11.1.4 23632 1ufaA 520 2.20e+01 a.8.3.3,c.6.2.4 99329,99330 2c8mA 262 2.22e+01 1thg 544 2.22e+01 1thg c.69.1.17 34763 1em9A 154 2.25e+01 1d1dA a.73.1.1 18333 2ae2A 260 2.30e+01 1bdb c.2.1.2 29945 1jksA 294 2.48e+01 d.144.1.7 71710 1kgnA 329 2.52e+01 a.25.1.2 68584 2erbA 125 2.54e+01 1tu5A 746 2.57e+01 1o9gA 250 2.59e+01 c.66.1.29 86692 1gvnA 90 2.74e+01 a.8.2.1 76353 1ljoA 77 2.75e+01 b.38.1.1 73941 1j55A 95 2.81e+01 a.39.1.2 77078 1dbhA 354 2.87e+01 1awe a.87.1.1,b.55.1.1 18514,26967 1eswA 500 2.93e+01 1cwyA c.1.8.1 59500 2ga1A 106 2.99e+01 1vjjA 692 2.99e+01 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 100814,100815,100816,100817 5cytR 104 3.00e+01 1ycc a.3.1.1 15878 2bdwA 362 3.00e+01 1a78A 134 3.10e+01 1c1lA b.29.1.3 24212 1wznA 252 3.12e+01 1gcvB 136 3.16e+01 1cg5B a.1.1.2 15589 1erd 40 3.16e+01 1erd a.10.1.1 16362 2b5hA 200 3.16e+01 1gbs 185 3.18e+01 153l d.2.1.5 36986 1ta3A 274 3.19e+01 c.1.8.5 106731 2go7A 207 3.19e+01 1p3qQ 54 3.26e+01 a.5.2.4 87748 2cxxA 190 3.32e+01 1no1A 126 3.33e+01 a.179.1.1 85913 1sz2A 332 3.35e+01 1mp1A 111 3.45e+01 a.188.1.1 91382 2flsA 132 3.48e+01 2aa1B 146 3.48e+01 1qhfA 240 3.49e+01 1qhfA c.60.1.1 33960 1hlvA 131 3.60e+01 a.4.1.7,a.4.1.7 65854,65855 1yvrA 538 3.65e+01 1tca 317 3.70e+01 1tca c.69.1.17 34726 1jpaA 312 3.85e+01 d.144.1.7 67011 1ymtA 246 3.92e+01 1tkiA 321 3.99e+01 1tkiA d.144.1.7 41638 1a4pA 96 4.02e+01 1b4cA a.39.1.2 17176 1tn6A 382 4.03e+01 1fgkA 310 4.08e+01 1fgkA d.144.1.7 41693 1p4cA 380 4.09e+01 c.1.4.1 94100 12asA 330 4.09e+01 12asA d.104.1.1 40783 1lvwA 295 4.11e+01 c.68.1.6 84723 2fneA 117 4.13e+01 1jadA 251 4.14e+01 h.4.10.1 66461 1n5nA 180 4.15e+01 d.167.1.1 85336 2g39A 497 4.19e+01 1wmgA 103 4.21e+01 1nigA 152 4.24e+01 a.25.2.1 85740 1wchA 315 4.37e+01 1z9bA 135 4.43e+01 1i6lA 328 4.46e+01 c.26.1.1 66041 1odfA 290 4.52e+01 c.37.1.6 92782 2b7aA 293 4.61e+01 2scpA 174 4.63e+01 2scpA a.39.1.5 17256 1php 394 4.69e+01 16pk c.86.1.1 35452 1r7jA 95 4.70e+01 a.4.5.49 104836 1k8uA 90 4.71e+01 a.39.1.2 72181 1olmA 403 4.76e+01 a.5.3.1,b.132.1.1,c.13.1.1 104008,104009,104010 1ldfA 281 4.86e+01 f.19.1.1 73845 1xfiA 367 4.89e+01 e.50.1.1 109584 1m2dA 110 4.89e+01 c.47.1.11 78476 1q3iA 214 4.93e+01 d.220.1.1 104524 1tujA 123 4.98e+01 1hbwA 57 5.01e+01 1hbwA h.1.3.1 60928 1eyhA 144 5.02e+01 1eduA a.118.9.1 19214 1mba 147 5.05e+01 2fal a.1.1.2 15149 1qj4A 257 5.08e+01 1qj4A c.69.1.20 34796 1x3kA 152 5.10e+01 1bg1A 722 5.12e+01 1bg1A a.47.1.1,b.2.5.5,d.93.1.1 17767,22461,40527 1jbkA 195 5.27e+01 c.37.1.20 71631 1k94A 165 5.27e+01 a.39.1.8 68333 1p94A 76 5.28e+01 a.43.1.3 94380 1nm8A 616 5.29e+01 c.43.1.3,c.43.1.3 85872,85873 1qhxA 178 5.34e+01 1qhsA c.37.1.3 31936 1yf9A 171 5.35e+01 1vjpA 394 5.48e+01 c.2.1.3,d.81.1.3 100828,100829 2bo3A 94 5.50e+01 1quqB 121 5.57e+01 1quqB b.40.4.3 25305 1ps1A 337 5.64e+01 1ps1A a.128.1.4 19450 1p2hA 571 5.67e+01 a.138.1.3,c.3.1.4,d.168.1.1 93930,93931,93932 2anuA 255 5.74e+01 1xahA 354 5.76e+01 1riiA 265 5.82e+01 1v6sA 390 5.90e+01 c.86.1.1 100424 1q6uA 245 5.93e+01 d.26.1.1 95998 1zybA 232 5.97e+01 1rxdA 159 6.12e+01 1wn5A 130 6.21e+01 2d8aA 348 6.31e+01 1y9zA 441 6.37e+01 1u7gA 385 6.37e+01 f.44.1.1 107723 1xknA 355 6.39e+01 1pzxA 289 6.56e+01 c.119.1.1 95484 2evaA 307 6.56e+01 1xk4C 113 6.60e+01 1sviA 195 6.61e+01 c.37.1.8 106048 1fiqB 350 6.72e+01 1fiqB d.87.2.1,d.145.1.3 40229,41760 1q6hA 224 6.81e+01 d.26.1.1 95975 2awpA 198 6.82e+01 1aa6 715 6.89e+01 2napA b.52.2.2,c.81.1.1 26916,35324 1r6wA 322 7.08e+01 c.1.11.2,d.54.1.1 97165,97166 1tzzA 392 7.08e+01 1t9bA 677 7.14e+01 1uujA 88 7.19e+01 a.221.1.1 108046 1k9uA 78 7.20e+01 a.39.1.10 84348 2gl5A 410 7.25e+01 1r3eA 309 7.29e+01 b.122.1.1,d.265.1.2 96907,96908 2fiyA 309 7.33e+01 1v84A 253 7.40e+01 c.68.1.7 108419 1va6A 518 7.41e+01 1ucrA 78 7.44e+01 a.4.5.45 99188 2iv2X 715 7.46e+01 1twfB 1224 7.48e+01 1iybA 208 7.51e+01 d.124.1.1 90720 2a72A 146 7.56e+01 1yr2A 741 7.64e+01 1mkaA 171 7.81e+01 1mkaA d.38.1.2 38543 1fi2A 201 7.83e+01 1fi2A b.82.1.2 59845 1rq6A 62 7.86e+01 1yp2A 451 7.93e+01 2pth 193 7.96e+01 2pth c.56.3.1 33793 2g76A 335 7.96e+01 1t1uA 639 8.02e+01 1pbjA 125 8.09e+01 d.37.1.1,d.37.1.1 94414,94415 1ig5A 75 8.10e+01 4icb a.39.1.1 62363 1t2dA 322 8.10e+01 c.2.1.5,d.162.1.1 99084,99085 1wrrA 301 8.11e+01 1t5oA 351 8.17e+01 c.124.1.5 106459 1vlpA 441 8.25e+01 d.41.2.2,d.41.2.3 108840,108841 2bl0C 142 8.36e+01 1wwiA 148 8.44e+01 1bolA 222 8.44e+01 1bolA d.124.1.1 41120 1zb1A 392 8.46e+01 1n5gA 38 8.53e+01 g.67.1.1 91684 1q8dA 108 8.55e+01 a.228.1.1 104554 1zkrA 153 8.56e+01 1zsqA 528 8.82e+01 1jpyA 137 8.84e+01 g.17.1.6 67065 1x1oA 286 8.86e+01 1b67A 68 8.89e+01 1a7w a.22.1.2 16474 1q3oA 109 8.95e+01 b.36.1.1 95700 1v02A 565 8.99e+01 c.1.8.4 108194