CreatePredAlphaCost pred_alpha2k alpha11 T0359.t2k.alpha.rdb 2 alpha alpha_prev sum CreatePredAlphaCost pred_alpha04 alpha11 T0359.t04.alpha.rdb 2 alpha alpha_prev sum CreatePredAlphaCost pred_alpha06 alpha11 T0359.t06.alpha.rdb 2 alpha alpha_prev sum SetCost wet6.5 15 near_backbone 5 way_back 5 dry5 15 dry6.5 20 dry8 15 dry12 5 \ phobic_fit 2 \ sidechain 5 \ n_ca_c 5 bad_peptide 10 \ bystroff 5 \ soft_clashes 40 backbone_clashes 2 \ break 180 \ pred_alpha2k 2 \ pred_alpha04 2 \ pred_alpha06 2 \ constraints 5 \ hbond_geom 5 \ hbond_geom_backbone 10 \ hbond_geom_beta 40 \ hbond_geom_beta_pair 80 \ missing_atoms 1 # from decoys/try1-opt2.sheets SheetConstraint S1 K12 E94 Q83 hbond M2 1 SheetConstraint K12 N13 L17 G16 hbond N13 1 SheetConstraint G18 I21 T41 K38 hbond T20 1 SheetConstraint I19 G23 S39 I35 hbond A22 1 SheetConstraint D56 I59 R91 T88 hbond Q57 1 SheetConstraint A60 D62 T88 L86 hbond A60 1 SheetConstraint I59 V61 L66 T64 hbond V61 1 # from decoys/try1-opt2.helices HelixConstraint S44 G50 1 HelixConstraint T70 H80 1