/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:725: SECONDARY_TARGET = T0359.t06.str2 mkdir -p decoys rm decoys/read-pdb+servers.under cd decoys; shopt -s nullglob ; for x in ../*.ts-submitted* ; do echo ReadConformPDB $x >> read-pdb+servers.under ; done cd decoys; shopt -s nullglob ; for x in *.pdb* ; do echo ReadConformPDB $x >> read-pdb+servers.under ; done cd decoys; shopt -s nullglob ; for x in ../*mer/decoys/*.pdb* ; \ do echo ReadConformPDB $x chain A >> read-pdb+servers.under ; \ y=${x#../} ;\ z=${y/decoys} ;\ a=${z/T0359.} ;\ b=${a%.gz} ;\ c=${b%.pdb} ;\ echo NameConform $c >> read-pdb+servers.under ; \ done cd decoys; shopt -s nullglob ; for x in servers/*.pdb.gz ; do \ echo ReadConformPDB $x >> read-pdb+servers.under ; \ y=${x%.pdb.gz} ; \ z=${y#servers/} ; \ echo NameConform $z >> read-pdb+servers.under ; \ echo SCWRLConform >> read-pdb+servers.under ; \ echo NameConform $z-scwrl >> read-pdb+servers.under ; \ done chgrp protein decoys/read-pdb+servers.under chmod g+w decoys/read-pdb+servers.under rm -f decoys/evaluate.rdb sed -e s/XXX0000/T0359/ -e s/START_COL/1/ \ -e s/REAL_PDB/2iwnA/ \ -e s/_domain// \ -e s/read-pdb/read-pdb+servers/ \ -e 's/include COSTFCN.costfcn//' \ -e s/.COSTFCN// \ < /projects/compbio/experiments/protein-predict/casp7/starter-directory/evaluate.under \ | nice -2 /projects/compbio/programs/undertaker/undertaker # command:# Seed set to 1169959777 # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading monomeric-50pc.atoms # trans (non-proline) backbone unit: # CA= -2.2088 1.0126 -0.0031 # O= -0.1499 2.2440 0.0017 # C= -0.6889 1.1368 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 0.0000 0.0000 # cis backbone unit: # CA= -0.1462 2.4515 0.0018 # O= -2.0272 0.9713 0.0022 # C= -0.8006 1.0755 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4659 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2099 1.0634 -0.0014 # O= -0.1233 2.2459 0.0075 # C= -0.6871 1.1518 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading monomeric-50pc.atoms have 448 chains in training database # Count of chains,residues,atoms: 448,112605,876684 # 109826 residues have no bad marker # 665 residues lack atoms needed to compute omega # 322 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 6 # HAS_OXT 325 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 523 # HAS_UNKNOWN_ATOMS 2 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 208 # NON_PLANAR_PEPTIDE 143 # BAD_PEPTIDE 1959 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-1332.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:CPU_time= 6.08807 sec, elapsed time= 6.12906 sec) # command:# Reading spots from monomeric-50pc-dry-5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-5.hist # created burial cost function dry5 with radius 5 with spots at monomeric-50pc-dry-5.spot # command:# Reading spots from monomeric-50pc-wet-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-wet-6.5.hist # created burial cost function wet6.5 with radius 6.5 with spots at monomeric-50pc-wet-6.5.spot # command:# Reading spots from monomeric-50pc-dry-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-6.5.hist # created burial cost function dry6.5 with radius 6.5 with spots at monomeric-50pc-dry-6.5.spot # command:# Reading spots from monomeric-50pc-generic-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-generic-6.5.hist # created burial cost function gen6.5 with radius 6.5 with spots at monomeric-50pc-generic-6.5.spot # command:# Reading spots from near-backbone-center.spot # reading histogram from smoothed-near-backbone-2spot.hist # Reading spots from near-backbone-count.spot # created burial cost function near_backbone with radius 9.65 with spots at near-backbone-center.spot counting only near-backbone-count.spot # command:# Reading spots from way-back-center.spot # reading histogram from smoothed-way-back-2spot.hist # Reading spots from way-back-count.spot # created burial cost function way_back with radius 8.9 with spots at way-back-center.spot counting only way-back-count.spot # command:# Reading spots from monomeric-50pc-dry-8.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-8.hist # created burial cost function dry8 with radius 8 with spots at monomeric-50pc-dry-8.spot # command:# Reading spots from monomeric-50pc-dry-10.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-10.hist # created burial cost function dry10 with radius 10 with spots at monomeric-50pc-dry-10.spot # command:# Reading spots from monomeric-50pc-dry-12.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-12.hist # created burial cost function dry12 with radius 12 with spots at monomeric-50pc-dry-12.spot # command:# reading histogram from dunbrack-2191-alpha.hist # created alpha cost function alpha with offset 0 and 360 bins # command:# reading histogram from dunbrack-2191-alpha-1.hist # created alpha cost function alpha_prev with offset -1 and 360 bins # command:# Prefix for input files set to /projects/compbio/lib/alphabet/ # command:# Read 3 alphabets from alpha.alphabet # command:CPU_time= 6.16506 sec, elapsed time= 6.22075 sec) # command:# Prefix for input files set to # command:# Making conformation for sequence T0359 numbered 1 through 97 Created new target T0359 from T0359.a2m # command:# command:# No conformations to remove in PopConform # command:# cleared Id set # command:# command:2iwnA expands to /projects/compbio/data/pdb/2iwn.pdb.gz 2iwnA:Skipped atom 15, because occupancy 5.0000000e-01 <= existing 0.500 in 2iwnA Skipped atom 16, because occupancy 0.500 <= existing 0.500 in 2iwnA Skipped atom 17, because occupancy 0.500 <= existing 0.500 in 2iwnA Skipped atom 33, because occupancy 0.500 <= existing 0.500 in 2iwnA Skipped atom 34, because occupancy 0.500 <= existing 0.500 in 2iwnA Skipped atom 35, because occupancy 0.500 <= existing 0.500 in 2iwnA Skipped atom 36, because occupancy 0.500 <= existing 0.500 in 2iwnA Skipped atom 37, because occupancy 0.500 <= existing 0.500 in 2iwnA Skipped atom 38, because occupancy 0.500 <= existing 0.500 in 2iwnA Skipped atom 165, because occupancy 0.250 <= existing 0.250 in 2iwnA Skipped atom 166, because occupancy 0.250 <= existing 0.250 in 2iwnA Skipped atom 167, because occupancy 0.250 <= existing 0.250 in 2iwnA Skipped atom 168, because occupancy 0.250 <= existing 0.250 in 2iwnA Skipped atom 169, because occupancy 0.250 <= existing 0.250 in 2iwnA Skipped atom 170, because occupancy 0.250 <= existing 0.250 in 2iwnA Skipped atom 171, because occupancy 0.250 <= existing 0.250 in 2iwnA Skipped atom 172, because occupancy 0.250 <= existing 0.250 in 2iwnA Skipped atom 173, because occupancy 0.250 <= existing 0.250 in 2iwnA Skipped atom 174, because occupancy 0.250 <= existing 0.250 in 2iwnA Skipped atom 175, because occupancy 0.250 <= existing 0.250 in 2iwnA Skipped atom 176, because occupancy 0.250 <= existing 0.250 in 2iwnA Skipped atom 228, because occupancy 0.500 <= existing 0.500 in 2iwnA Skipped atom 229, because occupancy 0.500 <= existing 0.500 in 2iwnA Skipped atom 463, because occupancy 0.500 <= existing 0.500 in 2iwnA Skipped atom 464, because occupancy 0.500 <= existing 0.500 in 2iwnA Skipped atom 465, because occupancy 0.500 <= existing 0.500 in 2iwnA Skipped atom 466, because occupancy 0.500 <= existing 0.500 in 2iwnA Skipped atom 662, because occupancy 0.500 <= existing 0.500 in 2iwnA Skipped atom 663, because occupancy 0.500 <= existing 0.500 in 2iwnA Skipped atom 664, because occupancy 0.500 <= existing 0.500 in 2iwnA Read 93 residues and 690 atoms. # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # command:# Saving current conformation as real # command:# Prefix for output files set to decoys/ # command:# SetRealCost created real_cost = # ( 50 * real_hbond + 50 * real_hbond_u + 50 * decoy_hbond + 50 * decoy_hbond_u + 10 * real_NO_hbond + 10 * real_NO_hbond_u + 10 * decoy_NO_hbond + 10 * decoy_NO_hbond_u + 10 * knot + 200 * clens + 0 * rmsd + 35 * log_rmsd + 0 * rmsd_ca + 30 * log_rmsd_ca + 1 * GDT + 1 * smooth_GDT + 0.2 * missing_atoms ) # command:# SetCost created cost = # ) # command:CPU_time= 8.36773 sec, elapsed time= 8.46932 sec) # command:# Prefix for input files set to # command:# ReadConformPDB reading from PDB file model1.ts-submitted looking for model 1 # choosing archetypes in rotamer library # Found a chain break before 94 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -85.7527 # GDT_score(maxd=8,maxw=2.9)= -87.7029 # GDT_score(maxd=8,maxw=3.2)= -85.357 # GDT_score(maxd=8,maxw=3.5)= -82.7492 # GDT_score(maxd=10,maxw=3.8)= -84.3904 # GDT_score(maxd=10,maxw=4)= -82.6209 # GDT_score(maxd=10,maxw=4.2)= -80.8118 # GDT_score(maxd=12,maxw=4.3)= -83.3663 # GDT_score(maxd=12,maxw=4.5)= -81.627 # GDT_score(maxd=12,maxw=4.7)= -79.9185 # GDT_score(maxd=14,maxw=5.2)= -78.4226 # GDT_score(maxd=14,maxw=5.5)= -75.6788 # command:# request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_938779472.pdb -s /var/tmp/to_scwrl_938779472.seq -o /var/tmp/from_scwrl_938779472.pdb > /var/tmp/scwrl_938779472.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_938779472.pdb # conformation set from SCWRL output # command:# naming current conformation model1-scwrl # command:# Prefix for output files set to # command:superimposing iter= 0 total_weight= 1061.000 rmsd (weighted)= 2.997 (unweighted)= 6.237 superimposing iter= 1 total_weight= 3610.411 rmsd (weighted)= 1.075 (unweighted)= 6.312 superimposing iter= 2 total_weight= 1670.553 rmsd (weighted)= 0.662 (unweighted)= 6.329 superimposing iter= 3 total_weight= 978.061 rmsd (weighted)= 0.549 (unweighted)= 6.329 superimposing iter= 4 total_weight= 787.324 rmsd (weighted)= 0.510 (unweighted)= 6.327 superimposing iter= 5 total_weight= 730.922 rmsd (weighted)= 0.492 (unweighted)= 6.325 # command:# Prefix for output files set to decoys/ # command:# ReadConformPDB reading from PDB file model2.ts-submitted looking for model 1 # Found a chain break before 69 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -80.914 # GDT_score(maxd=8,maxw=2.9)= -83.2859 # GDT_score(maxd=8,maxw=3.2)= -80.7641 # GDT_score(maxd=8,maxw=3.5)= -77.9473 # GDT_score(maxd=10,maxw=3.8)= -79.7303 # GDT_score(maxd=10,maxw=4)= -77.9244 # GDT_score(maxd=10,maxw=4.2)= -76.1178 # GDT_score(maxd=12,maxw=4.3)= -78.9288 # GDT_score(maxd=12,maxw=4.5)= -77.1742 # GDT_score(maxd=12,maxw=4.7)= -75.4555 # GDT_score(maxd=14,maxw=5.2)= -74.2538 # GDT_score(maxd=14,maxw=5.5)= -71.6905 # command:# request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_2051870337.pdb -s /var/tmp/to_scwrl_2051870337.seq -o /var/tmp/from_scwrl_2051870337.pdb > /var/tmp/scwrl_2051870337.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2051870337.pdb # conformation set from SCWRL output # command:# naming current conformation model2-scwrl # command:# ReadConformPDB reading from PDB file model3.ts-submitted looking for model 1 # Found a chain break before 25 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -77.4194 # GDT_score(maxd=8,maxw=2.9)= -80.1586 # GDT_score(maxd=8,maxw=3.2)= -76.8151 # GDT_score(maxd=8,maxw=3.5)= -73.4798 # GDT_score(maxd=10,maxw=3.8)= -75.9479 # GDT_score(maxd=10,maxw=4)= -73.7724 # GDT_score(maxd=10,maxw=4.2)= -71.5964 # GDT_score(maxd=12,maxw=4.3)= -75.0014 # GDT_score(maxd=12,maxw=4.5)= -72.8755 # GDT_score(maxd=12,maxw=4.7)= -70.7611 # GDT_score(maxd=14,maxw=5.2)= -69.382 # GDT_score(maxd=14,maxw=5.5)= -66.6478 # command:# request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1362115119.pdb -s /var/tmp/to_scwrl_1362115119.seq -o /var/tmp/from_scwrl_1362115119.pdb > /var/tmp/scwrl_1362115119.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1362115119.pdb # conformation set from SCWRL output # command:# naming current conformation model3-scwrl # command:# ReadConformPDB reading from PDB file model4.ts-submitted looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -86.2903 # GDT_score(maxd=8,maxw=2.9)= -88.4069 # GDT_score(maxd=8,maxw=3.2)= -86.0913 # GDT_score(maxd=8,maxw=3.5)= -83.4053 # GDT_score(maxd=10,maxw=3.8)= -85.0057 # GDT_score(maxd=10,maxw=4)= -83.1547 # GDT_score(maxd=10,maxw=4.2)= -81.3022 # GDT_score(maxd=12,maxw=4.3)= -83.8677 # GDT_score(maxd=12,maxw=4.5)= -82.0686 # GDT_score(maxd=12,maxw=4.7)= -80.2401 # GDT_score(maxd=14,maxw=5.2)= -78.5257 # GDT_score(maxd=14,maxw=5.5)= -75.6764 # command:# request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_284870329.pdb -s /var/tmp/to_scwrl_284870329.seq -o /var/tmp/from_scwrl_284870329.pdb > /var/tmp/scwrl_284870329.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_284870329.pdb # conformation set from SCWRL output # command:# naming current conformation model4-scwrl # command:# ReadConformPDB reading from PDB file model5.ts-submitted looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # command:# fraction of real conformation used = 0.903226 # GDT_score = -76.6129 # GDT_score(maxd=8,maxw=2.9)= -80.0354 # GDT_score(maxd=8,maxw=3.2)= -77.2155 # GDT_score(maxd=8,maxw=3.5)= -74.5994 # GDT_score(maxd=10,maxw=3.8)= -76.0926 # GDT_score(maxd=10,maxw=4)= -74.5181 # GDT_score(maxd=10,maxw=4.2)= -73.004 # GDT_score(maxd=12,maxw=4.3)= -75.2232 # GDT_score(maxd=12,maxw=4.5)= -73.7523 # GDT_score(maxd=12,maxw=4.7)= -72.2991 # GDT_score(maxd=14,maxw=5.2)= -71.1201 # GDT_score(maxd=14,maxw=5.5)= -68.6548 # command:# request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1877544194.pdb -s /var/tmp/to_scwrl_1877544194.seq -o /var/tmp/from_scwrl_1877544194.pdb > /var/tmp/scwrl_1877544194.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1877544194.pdb # conformation set from SCWRL output # command:# naming current conformation model5-scwrl # command:# Prefix for input files set to decoys/ # command:# ReadConformPDB reading from PDB file T0359.try1-opt2.pdb looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -86.5591 # GDT_score(maxd=8,maxw=2.9)= -88.4581 # GDT_score(maxd=8,maxw=3.2)= -86.1764 # GDT_score(maxd=8,maxw=3.5)= -83.4705 # GDT_score(maxd=10,maxw=3.8)= -85.0643 # GDT_score(maxd=10,maxw=4)= -83.2045 # GDT_score(maxd=10,maxw=4.2)= -81.3538 # GDT_score(maxd=12,maxw=4.3)= -83.914 # GDT_score(maxd=12,maxw=4.5)= -82.1254 # GDT_score(maxd=12,maxw=4.7)= -80.3213 # GDT_score(maxd=14,maxw=5.2)= -78.6281 # GDT_score(maxd=14,maxw=5.5)= -75.7543 # command:# Prefix for output files set to # command:superimposing iter= 0 total_weight= 1061.000 rmsd (weighted)= 2.940 (unweighted)= 6.184 superimposing iter= 1 total_weight= 3600.283 rmsd (weighted)= 1.060 (unweighted)= 6.251 superimposing iter= 2 total_weight= 1627.310 rmsd (weighted)= 0.664 (unweighted)= 6.262 superimposing iter= 3 total_weight= 950.684 rmsd (weighted)= 0.559 (unweighted)= 6.260 superimposing iter= 4 total_weight= 781.443 rmsd (weighted)= 0.522 (unweighted)= 6.258 superimposing iter= 5 total_weight= 726.536 rmsd (weighted)= 0.507 (unweighted)= 6.256 # command:# Prefix for output files set to decoys/ # command:# Prefix for input files set to # command:# ReadConformPDB reading from PDB file T0359.undertaker-align.pdb looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # command:# naming current conformation align1 # command:# fraction of real conformation used = 0.924731 # GDT_score = -78.2258 # GDT_score(maxd=8,maxw=2.9)= -81.7478 # GDT_score(maxd=8,maxw=3.2)= -78.895 # GDT_score(maxd=8,maxw=3.5)= -76.2411 # GDT_score(maxd=10,maxw=3.8)= -77.7527 # GDT_score(maxd=10,maxw=4)= -76.1567 # GDT_score(maxd=10,maxw=4.2)= -74.6066 # GDT_score(maxd=12,maxw=4.3)= -76.8844 # GDT_score(maxd=12,maxw=4.5)= -75.3825 # GDT_score(maxd=12,maxw=4.7)= -73.9096 # GDT_score(maxd=14,maxw=5.2)= -72.7244 # GDT_score(maxd=14,maxw=5.5)= -70.2651 # command:# ReadConformPDB reading from PDB file T0359.undertaker-align.pdb looking for model 2 WARNING: atoms too close: (T0359)K29.C and (T0359)L30.C only 0.000 apart, marking (T0359)L30.C as missing WARNING: atoms too close: (T0359)L30.N and (T0359)E31.N only 0.000 apart, marking (T0359)L30.N as missing WARNING: atoms too close: (T0359)L30.CA and (T0359)E31.CA only 0.000 apart, marking (T0359)L30.CA as missing # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # copying to AlignedFragments data structure # command:# naming current conformation align2 # command:# fraction of real conformation used = 0.892473 # GDT_score = -74.4624 # GDT_score(maxd=8,maxw=2.9)= -75.9946 # GDT_score(maxd=8,maxw=3.2)= -74.0516 # GDT_score(maxd=8,maxw=3.5)= -71.9092 # GDT_score(maxd=10,maxw=3.8)= -73.344 # GDT_score(maxd=10,maxw=4)= -71.7986 # GDT_score(maxd=10,maxw=4.2)= -70.2143 # GDT_score(maxd=12,maxw=4.3)= -72.5128 # GDT_score(maxd=12,maxw=4.5)= -70.9737 # GDT_score(maxd=12,maxw=4.7)= -69.3437 # GDT_score(maxd=14,maxw=5.2)= -67.8646 # GDT_score(maxd=14,maxw=5.5)= -65.316 # command:# ReadConformPDB reading from PDB file T0359.undertaker-align.pdb looking for model 3 WARNING: atoms too close: (T0359)G26.C and (T0359)E31.C only 0.000 apart, marking (T0359)E31.C as missing WARNING: atoms too close: (T0359)D27.N and (T0359)P32.N only 0.000 apart, marking (T0359)D27.N as missing WARNING: atoms too close: (T0359)D27.CA and (T0359)P32.CA only 0.000 apart, marking (T0359)D27.CA as missing WARNING: atoms too close: (T0359)G50.C and (T0359)R51.C only 0.000 apart, marking (T0359)R51.C as missing WARNING: atoms too close: (T0359)R51.N and (T0359)I52.N only 0.000 apart, marking (T0359)R51.N as missing WARNING: atoms too close: (T0359)R51.CA and (T0359)I52.CA only 0.000 apart, marking (T0359)R51.CA as missing # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # command:# naming current conformation align3 # command:# ReadConformPDB reading from PDB file T0359.undertaker-align.pdb looking for model 4 WARNING: atoms too close: (T0359)G26.C and (T0359)E31.C only 0.000 apart, marking (T0359)E31.C as missing WARNING: atoms too close: (T0359)D27.N and (T0359)P32.N only 0.000 apart, marking (T0359)D27.N as missing WARNING: atoms too close: (T0359)D27.CA and (T0359)P32.CA only 0.000 apart, marking (T0359)D27.CA as missing # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # command:# naming current conformation align4 # command:# ReadConformPDB reading from PDB file T0359.undertaker-align.pdb looking for model 5 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # command:# naming current conformation align5 # command:# Prefix for input files set to decoys/ # command:# reading script from file read-pdb+servers.under # ReadConformPDB reading from PDB file ../model1.ts-submitted looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model2.ts-submitted looking for model 1 # Found a chain break before 69 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model3.ts-submitted looking for model 1 # Found a chain break before 25 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model4.ts-submitted looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model5.ts-submitted looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # ReadConformPDB reading from PDB file T0359.try1-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0359.try1-opt1.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0359.try1-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0359.try1-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0359.try1-opt2.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0359.try1-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0359.try2-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0359.try2-opt1.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0359.try2-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0359.try2-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0359.try2-opt2.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0359.try2-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0359.try3-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0359.try3-opt1.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0359.try3-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0359.try3-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0359.try3-opt2.pdb.gz looking for model 1 # Found a chain break before 69 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0359.try3-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 69 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0359.try4-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0359.try4-opt1.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0359.try4-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0359.try4-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0359.try4-opt2.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0359.try4-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0359.try5-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0359.try5-opt1.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0359.try5-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0359.try5-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0359.try5-opt2.gromacs1.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0359.try5-opt2.gromacs1.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0359.try5-opt2.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0359.try5-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0359.try6-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0359.try6-opt1.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0359.try6-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 42 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0359.try6-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 42 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0359.try6-opt2.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0359.try6-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0359.try7-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0359.try7-opt1.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0359.try7-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0359.try7-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0359.try7-opt2.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0359.try7-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0359.try8-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 70 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0359.try8-opt1.pdb.gz looking for model 1 # Found a chain break before 70 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0359.try8-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 69 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0359.try8-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 69 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0359.try8-opt2.pdb.gz looking for model 1 # Found a chain break before 70 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0359.try8-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 70 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0359.try9-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0359.try9-opt1.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0359.try9-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 25 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0359.try9-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 25 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0359.try9-opt2.pdb.gz looking for model 1 # Found a chain break before 92 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0359.try9-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 92 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_297425861.pdb -s /var/tmp/to_scwrl_297425861.seq -o /var/tmp/from_scwrl_297425861.pdb > /var/tmp/scwrl_297425861.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_297425861.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_854035550.pdb -s /var/tmp/to_scwrl_854035550.seq -o /var/tmp/from_scwrl_854035550.pdb > /var/tmp/scwrl_854035550.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_854035550.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1505475739.pdb -s /var/tmp/to_scwrl_1505475739.seq -o /var/tmp/from_scwrl_1505475739.pdb > /var/tmp/scwrl_1505475739.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1505475739.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_731720501.pdb -s /var/tmp/to_scwrl_731720501.seq -o /var/tmp/from_scwrl_731720501.pdb > /var/tmp/scwrl_731720501.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_731720501.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1087770406.pdb -s /var/tmp/to_scwrl_1087770406.seq -o /var/tmp/from_scwrl_1087770406.pdb > /var/tmp/scwrl_1087770406.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1087770406.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS5-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_255662102.pdb -s /var/tmp/to_scwrl_255662102.seq -o /var/tmp/from_scwrl_255662102.pdb > /var/tmp/scwrl_255662102.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_255662102.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1066674053.pdb -s /var/tmp/to_scwrl_1066674053.seq -o /var/tmp/from_scwrl_1066674053.pdb > /var/tmp/scwrl_1066674053.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1066674053.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1366419651.pdb -s /var/tmp/to_scwrl_1366419651.seq -o /var/tmp/from_scwrl_1366419651.pdb > /var/tmp/scwrl_1366419651.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1366419651.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1271462507.pdb -s /var/tmp/to_scwrl_1271462507.seq -o /var/tmp/from_scwrl_1271462507.pdb > /var/tmp/scwrl_1271462507.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1271462507.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1806284891.pdb -s /var/tmp/to_scwrl_1806284891.seq -o /var/tmp/from_scwrl_1806284891.pdb > /var/tmp/scwrl_1806284891.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1806284891.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS5-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_963495872.pdb -s /var/tmp/to_scwrl_963495872.seq -o /var/tmp/from_scwrl_963495872.pdb > /var/tmp/scwrl_963495872.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_963495872.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_2090824674.pdb -s /var/tmp/to_scwrl_2090824674.seq -o /var/tmp/from_scwrl_2090824674.pdb > /var/tmp/scwrl_2090824674.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2090824674.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_745216699.pdb -s /var/tmp/to_scwrl_745216699.seq -o /var/tmp/from_scwrl_745216699.pdb > /var/tmp/scwrl_745216699.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_745216699.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1815030284.pdb -s /var/tmp/to_scwrl_1815030284.seq -o /var/tmp/from_scwrl_1815030284.pdb > /var/tmp/scwrl_1815030284.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1815030284.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1964199654.pdb -s /var/tmp/to_scwrl_1964199654.seq -o /var/tmp/from_scwrl_1964199654.pdb > /var/tmp/scwrl_1964199654.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1964199654.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS5-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # naming current conformation 3Dpro_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1520788808.pdb -s /var/tmp/to_scwrl_1520788808.seq -o /var/tmp/from_scwrl_1520788808.pdb > /var/tmp/scwrl_1520788808.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1520788808.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 65 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_440265945.pdb -s /var/tmp/to_scwrl_440265945.seq -o /var/tmp/from_scwrl_440265945.pdb > /var/tmp/scwrl_440265945.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_440265945.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 65 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_198930840.pdb -s /var/tmp/to_scwrl_198930840.seq -o /var/tmp/from_scwrl_198930840.pdb > /var/tmp/scwrl_198930840.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_198930840.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 65 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_579805918.pdb -s /var/tmp/to_scwrl_579805918.seq -o /var/tmp/from_scwrl_579805918.pdb > /var/tmp/scwrl_579805918.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_579805918.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # Found a chain break before 65 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_414506597.pdb -s /var/tmp/to_scwrl_414506597.seq -o /var/tmp/from_scwrl_414506597.pdb > /var/tmp/scwrl_414506597.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_414506597.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 9 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1524494657.pdb -s /var/tmp/to_scwrl_1524494657.seq -o /var/tmp/from_scwrl_1524494657.pdb > /var/tmp/scwrl_1524494657.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1524494657.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_290751796.pdb -s /var/tmp/to_scwrl_290751796.seq -o /var/tmp/from_scwrl_290751796.pdb > /var/tmp/scwrl_290751796.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_290751796.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 86 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1621578615.pdb -s /var/tmp/to_scwrl_1621578615.seq -o /var/tmp/from_scwrl_1621578615.pdb > /var/tmp/scwrl_1621578615.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1621578615.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 84 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_467431985.pdb -s /var/tmp/to_scwrl_467431985.seq -o /var/tmp/from_scwrl_467431985.pdb > /var/tmp/scwrl_467431985.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_467431985.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1964709945.pdb -s /var/tmp/to_scwrl_1964709945.seq -o /var/tmp/from_scwrl_1964709945.pdb > /var/tmp/scwrl_1964709945.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1964709945.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 33 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1314395025.pdb -s /var/tmp/to_scwrl_1314395025.seq -o /var/tmp/from_scwrl_1314395025.pdb > /var/tmp/scwrl_1314395025.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1314395025.pdb # conformation set from SCWRL output # naming current conformation BayesHH_TS1-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # Found a chain break before 91 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1406211456.pdb -s /var/tmp/to_scwrl_1406211456.seq -o /var/tmp/from_scwrl_1406211456.pdb > /var/tmp/scwrl_1406211456.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1406211456.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS1-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # Found a chain break before 65 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1869096635.pdb -s /var/tmp/to_scwrl_1869096635.seq -o /var/tmp/from_scwrl_1869096635.pdb > /var/tmp/scwrl_1869096635.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1869096635.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS2-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1 # Found a chain break before 92 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_529026498.pdb -s /var/tmp/to_scwrl_529026498.seq -o /var/tmp/from_scwrl_529026498.pdb > /var/tmp/scwrl_529026498.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_529026498.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS3-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1 # Found a chain break before 65 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1691081785.pdb -s /var/tmp/to_scwrl_1691081785.seq -o /var/tmp/from_scwrl_1691081785.pdb > /var/tmp/scwrl_1691081785.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1691081785.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS4-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1 # Found a chain break before 68 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1599157182.pdb -s /var/tmp/to_scwrl_1599157182.seq -o /var/tmp/from_scwrl_1599157182.pdb > /var/tmp/scwrl_1599157182.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1599157182.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS5-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_826452360.pdb -s /var/tmp/to_scwrl_826452360.seq -o /var/tmp/from_scwrl_826452360.pdb > /var/tmp/scwrl_826452360.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_826452360.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS1-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_397633689.pdb -s /var/tmp/to_scwrl_397633689.seq -o /var/tmp/from_scwrl_397633689.pdb > /var/tmp/scwrl_397633689.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_397633689.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS2-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # Found a chain break before 88 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_957149275.pdb -s /var/tmp/to_scwrl_957149275.seq -o /var/tmp/from_scwrl_957149275.pdb > /var/tmp/scwrl_957149275.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_957149275.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS3-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1558172860.pdb -s /var/tmp/to_scwrl_1558172860.seq -o /var/tmp/from_scwrl_1558172860.pdb > /var/tmp/scwrl_1558172860.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1558172860.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS4-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1485404095.pdb -s /var/tmp/to_scwrl_1485404095.seq -o /var/tmp/from_scwrl_1485404095.pdb > /var/tmp/scwrl_1485404095.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1485404095.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS5-scwrl # ReadConformPDB reading from PDB file servers/CPHmodels_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # naming current conformation CPHmodels_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1212811376.pdb -s /var/tmp/to_scwrl_1212811376.seq -o /var/tmp/from_scwrl_1212811376.pdb > /var/tmp/scwrl_1212811376.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1212811376.pdb # conformation set from SCWRL output # naming current conformation CPHmodels_TS1-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_477363266.pdb -s /var/tmp/to_scwrl_477363266.seq -o /var/tmp/from_scwrl_477363266.pdb > /var/tmp/scwrl_477363266.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_477363266.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS1-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_704340100.pdb -s /var/tmp/to_scwrl_704340100.seq -o /var/tmp/from_scwrl_704340100.pdb > /var/tmp/scwrl_704340100.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_704340100.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS2-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # Found a chain break before 30 # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_336790237.pdb -s /var/tmp/to_scwrl_336790237.seq -o /var/tmp/from_scwrl_336790237.pdb > /var/tmp/scwrl_336790237.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_336790237.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS3-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_136164511.pdb -s /var/tmp/to_scwrl_136164511.seq -o /var/tmp/from_scwrl_136164511.pdb > /var/tmp/scwrl_136164511.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_136164511.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS4-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1667835971.pdb -s /var/tmp/to_scwrl_1667835971.seq -o /var/tmp/from_scwrl_1667835971.pdb > /var/tmp/scwrl_1667835971.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1667835971.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS5-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_280131265.pdb -s /var/tmp/to_scwrl_280131265.seq -o /var/tmp/from_scwrl_280131265.pdb > /var/tmp/scwrl_280131265.log Error: Couldn't open file /var/tmp/from_scwrl_280131265.pdb or /var/tmp/from_scwrl_280131265.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_280131265_b.pdb or decoys//var/tmp/from_scwrl_280131265_b.pdb.gz for input Trying /var/tmp/from_scwrl_280131265_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_280131265_b.pdb or /var/tmp/from_scwrl_280131265_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_280131265_a.pdb or decoys//var/tmp/from_scwrl_280131265_a.pdb.gz for input Trying /var/tmp/from_scwrl_280131265_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_280131265_a.pdb or /var/tmp/from_scwrl_280131265_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_280131265.pdb or /var/tmp/from_scwrl_280131265_b.pdb or /var/tmp/from_scwrl_280131265_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS1-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_881381210.pdb -s /var/tmp/to_scwrl_881381210.seq -o /var/tmp/from_scwrl_881381210.pdb > /var/tmp/scwrl_881381210.log Error: Couldn't open file /var/tmp/from_scwrl_881381210.pdb or /var/tmp/from_scwrl_881381210.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_881381210_b.pdb or decoys//var/tmp/from_scwrl_881381210_b.pdb.gz for input Trying /var/tmp/from_scwrl_881381210_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_881381210_b.pdb or /var/tmp/from_scwrl_881381210_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_881381210_a.pdb or decoys//var/tmp/from_scwrl_881381210_a.pdb.gz for input Trying /var/tmp/from_scwrl_881381210_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_881381210_a.pdb or /var/tmp/from_scwrl_881381210_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_881381210.pdb or /var/tmp/from_scwrl_881381210_b.pdb or /var/tmp/from_scwrl_881381210_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS2-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1335382608.pdb -s /var/tmp/to_scwrl_1335382608.seq -o /var/tmp/from_scwrl_1335382608.pdb > /var/tmp/scwrl_1335382608.log Error: Couldn't open file /var/tmp/from_scwrl_1335382608.pdb or /var/tmp/from_scwrl_1335382608.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1335382608_b.pdb or decoys//var/tmp/from_scwrl_1335382608_b.pdb.gz for input Trying /var/tmp/from_scwrl_1335382608_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_1335382608_b.pdb or /var/tmp/from_scwrl_1335382608_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1335382608_a.pdb or decoys//var/tmp/from_scwrl_1335382608_a.pdb.gz for input Trying /var/tmp/from_scwrl_1335382608_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_1335382608_a.pdb or /var/tmp/from_scwrl_1335382608_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_1335382608.pdb or /var/tmp/from_scwrl_1335382608_b.pdb or /var/tmp/from_scwrl_1335382608_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS3-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_96847272.pdb -s /var/tmp/to_scwrl_96847272.seq -o /var/tmp/from_scwrl_96847272.pdb > /var/tmp/scwrl_96847272.log Error: Couldn't open file /var/tmp/from_scwrl_96847272.pdb or /var/tmp/from_scwrl_96847272.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_96847272_b.pdb or decoys//var/tmp/from_scwrl_96847272_b.pdb.gz for input Trying /var/tmp/from_scwrl_96847272_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_96847272_b.pdb or /var/tmp/from_scwrl_96847272_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_96847272_a.pdb or decoys//var/tmp/from_scwrl_96847272_a.pdb.gz for input Trying /var/tmp/from_scwrl_96847272_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_96847272_a.pdb or /var/tmp/from_scwrl_96847272_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_96847272.pdb or /var/tmp/from_scwrl_96847272_b.pdb or /var/tmp/from_scwrl_96847272_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS4-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_254686371.pdb -s /var/tmp/to_scwrl_254686371.seq -o /var/tmp/from_scwrl_254686371.pdb > /var/tmp/scwrl_254686371.log Error: Couldn't open file /var/tmp/from_scwrl_254686371.pdb or /var/tmp/from_scwrl_254686371.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_254686371_b.pdb or decoys//var/tmp/from_scwrl_254686371_b.pdb.gz for input Trying /var/tmp/from_scwrl_254686371_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_254686371_b.pdb or /var/tmp/from_scwrl_254686371_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_254686371_a.pdb or decoys//var/tmp/from_scwrl_254686371_a.pdb.gz for input Trying /var/tmp/from_scwrl_254686371_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_254686371_a.pdb or /var/tmp/from_scwrl_254686371_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_254686371.pdb or /var/tmp/from_scwrl_254686371_b.pdb or /var/tmp/from_scwrl_254686371_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS5-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1775648553.pdb -s /var/tmp/to_scwrl_1775648553.seq -o /var/tmp/from_scwrl_1775648553.pdb > /var/tmp/scwrl_1775648553.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1775648553.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS1-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # naming current conformation FAMSD_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_295778113.pdb -s /var/tmp/to_scwrl_295778113.seq -o /var/tmp/from_scwrl_295778113.pdb > /var/tmp/scwrl_295778113.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_295778113.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS2-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # naming current conformation FAMSD_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_834492289.pdb -s /var/tmp/to_scwrl_834492289.seq -o /var/tmp/from_scwrl_834492289.pdb > /var/tmp/scwrl_834492289.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_834492289.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS3-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # naming current conformation FAMSD_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_42671503.pdb -s /var/tmp/to_scwrl_42671503.seq -o /var/tmp/from_scwrl_42671503.pdb > /var/tmp/scwrl_42671503.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_42671503.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS4-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # naming current conformation FAMSD_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1820272770.pdb -s /var/tmp/to_scwrl_1820272770.seq -o /var/tmp/from_scwrl_1820272770.pdb > /var/tmp/scwrl_1820272770.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1820272770.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS5-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1125244084.pdb -s /var/tmp/to_scwrl_1125244084.seq -o /var/tmp/from_scwrl_1125244084.pdb > /var/tmp/scwrl_1125244084.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1125244084.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS1-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # naming current conformation FAMS_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1664250118.pdb -s /var/tmp/to_scwrl_1664250118.seq -o /var/tmp/from_scwrl_1664250118.pdb > /var/tmp/scwrl_1664250118.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1664250118.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS2-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # naming current conformation FAMS_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_140221108.pdb -s /var/tmp/to_scwrl_140221108.seq -o /var/tmp/from_scwrl_140221108.pdb > /var/tmp/scwrl_140221108.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_140221108.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS3-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation FAMS_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_942470383.pdb -s /var/tmp/to_scwrl_942470383.seq -o /var/tmp/from_scwrl_942470383.pdb > /var/tmp/scwrl_942470383.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_942470383.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS4-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # naming current conformation FAMS_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_831161498.pdb -s /var/tmp/to_scwrl_831161498.seq -o /var/tmp/from_scwrl_831161498.pdb > /var/tmp/scwrl_831161498.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_831161498.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS5-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 42 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1546432564.pdb -s /var/tmp/to_scwrl_1546432564.seq -o /var/tmp/from_scwrl_1546432564.pdb > /var/tmp/scwrl_1546432564.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1546432564.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 65 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_664083372.pdb -s /var/tmp/to_scwrl_664083372.seq -o /var/tmp/from_scwrl_664083372.pdb > /var/tmp/scwrl_664083372.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_664083372.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 65 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1360187995.pdb -s /var/tmp/to_scwrl_1360187995.seq -o /var/tmp/from_scwrl_1360187995.pdb > /var/tmp/scwrl_1360187995.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1360187995.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 65 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1090030703.pdb -s /var/tmp/to_scwrl_1090030703.seq -o /var/tmp/from_scwrl_1090030703.pdb > /var/tmp/scwrl_1090030703.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1090030703.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 65 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_115756907.pdb -s /var/tmp/to_scwrl_115756907.seq -o /var/tmp/from_scwrl_115756907.pdb > /var/tmp/scwrl_115756907.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_115756907.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL1 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_39156708.pdb -s /var/tmp/to_scwrl_39156708.seq -o /var/tmp/from_scwrl_39156708.pdb > /var/tmp/scwrl_39156708.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_39156708.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL1-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # naming current conformation FORTE1_AL2 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1487664392.pdb -s /var/tmp/to_scwrl_1487664392.seq -o /var/tmp/from_scwrl_1487664392.pdb > /var/tmp/scwrl_1487664392.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1487664392.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL2-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL3 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1072906183.pdb -s /var/tmp/to_scwrl_1072906183.seq -o /var/tmp/from_scwrl_1072906183.pdb > /var/tmp/scwrl_1072906183.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1072906183.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL3-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # naming current conformation FORTE1_AL4 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1597329568.pdb -s /var/tmp/to_scwrl_1597329568.seq -o /var/tmp/from_scwrl_1597329568.pdb > /var/tmp/scwrl_1597329568.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1597329568.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL4-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL5 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_825584841.pdb -s /var/tmp/to_scwrl_825584841.seq -o /var/tmp/from_scwrl_825584841.pdb > /var/tmp/scwrl_825584841.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_825584841.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL5-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE2_AL1 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_138233912.pdb -s /var/tmp/to_scwrl_138233912.seq -o /var/tmp/from_scwrl_138233912.pdb > /var/tmp/scwrl_138233912.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_138233912.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL1-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # naming current conformation FORTE2_AL2 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_2074692835.pdb -s /var/tmp/to_scwrl_2074692835.seq -o /var/tmp/from_scwrl_2074692835.pdb > /var/tmp/scwrl_2074692835.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2074692835.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL2-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # naming current conformation FORTE2_AL3 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1529924940.pdb -s /var/tmp/to_scwrl_1529924940.seq -o /var/tmp/from_scwrl_1529924940.pdb > /var/tmp/scwrl_1529924940.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1529924940.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL3-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE2_AL4 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_475024150.pdb -s /var/tmp/to_scwrl_475024150.seq -o /var/tmp/from_scwrl_475024150.pdb > /var/tmp/scwrl_475024150.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_475024150.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL4-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE2_AL5 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_63373699.pdb -s /var/tmp/to_scwrl_63373699.seq -o /var/tmp/from_scwrl_63373699.pdb > /var/tmp/scwrl_63373699.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_63373699.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL5-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 82 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1050277265.pdb -s /var/tmp/to_scwrl_1050277265.seq -o /var/tmp/from_scwrl_1050277265.pdb > /var/tmp/scwrl_1050277265.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1050277265.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS1-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS2.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_755155415.pdb -s /var/tmp/to_scwrl_755155415.seq -o /var/tmp/from_scwrl_755155415.pdb > /var/tmp/scwrl_755155415.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_755155415.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS2-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS3.pdb.gz looking for model 1 # Found a chain break before 82 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_944754909.pdb -s /var/tmp/to_scwrl_944754909.seq -o /var/tmp/from_scwrl_944754909.pdb > /var/tmp/scwrl_944754909.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_944754909.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS3-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS4.pdb.gz looking for model 1 # Found a chain break before 84 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_238176226.pdb -s /var/tmp/to_scwrl_238176226.seq -o /var/tmp/from_scwrl_238176226.pdb > /var/tmp/scwrl_238176226.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_238176226.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS4-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS5.pdb.gz looking for model 1 # Found a chain break before 76 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_852002687.pdb -s /var/tmp/to_scwrl_852002687.seq -o /var/tmp/from_scwrl_852002687.pdb > /var/tmp/scwrl_852002687.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_852002687.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS5-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1199441280.pdb -s /var/tmp/to_scwrl_1199441280.seq -o /var/tmp/from_scwrl_1199441280.pdb > /var/tmp/scwrl_1199441280.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1199441280.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS1-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # Found a chain break before 30 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_2013824779.pdb -s /var/tmp/to_scwrl_2013824779.seq -o /var/tmp/from_scwrl_2013824779.pdb > /var/tmp/scwrl_2013824779.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2013824779.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS2-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1147780799.pdb -s /var/tmp/to_scwrl_1147780799.seq -o /var/tmp/from_scwrl_1147780799.pdb > /var/tmp/scwrl_1147780799.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1147780799.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS3-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_2033933569.pdb -s /var/tmp/to_scwrl_2033933569.seq -o /var/tmp/from_scwrl_2033933569.pdb > /var/tmp/scwrl_2033933569.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2033933569.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS4-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # Found a chain break before 15 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_2056496282.pdb -s /var/tmp/to_scwrl_2056496282.seq -o /var/tmp/from_scwrl_2056496282.pdb > /var/tmp/scwrl_2056496282.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2056496282.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS5-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # naming current conformation FUGUE_AL1 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_820569923.pdb -s /var/tmp/to_scwrl_820569923.seq -o /var/tmp/from_scwrl_820569923.pdb > /var/tmp/scwrl_820569923.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_820569923.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL1-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # naming current conformation FUGUE_AL2 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1011694008.pdb -s /var/tmp/to_scwrl_1011694008.seq -o /var/tmp/from_scwrl_1011694008.pdb > /var/tmp/scwrl_1011694008.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1011694008.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL2-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 Skipped atom 211, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL3.pdb.gz # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # naming current conformation FUGUE_AL3 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1573262753.pdb -s /var/tmp/to_scwrl_1573262753.seq -o /var/tmp/from_scwrl_1573262753.pdb > /var/tmp/scwrl_1573262753.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1573262753.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL3-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # naming current conformation FUGUE_AL4 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_960791031.pdb -s /var/tmp/to_scwrl_960791031.seq -o /var/tmp/from_scwrl_960791031.pdb > /var/tmp/scwrl_960791031.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_960791031.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL4-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # naming current conformation FUGUE_AL5 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1954164390.pdb -s /var/tmp/to_scwrl_1954164390.seq -o /var/tmp/from_scwrl_1954164390.pdb > /var/tmp/scwrl_1954164390.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1954164390.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL5-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_256940604.pdb -s /var/tmp/to_scwrl_256940604.seq -o /var/tmp/from_scwrl_256940604.pdb > /var/tmp/scwrl_256940604.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_256940604.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS1-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # Found a chain break before 91 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_359739949.pdb -s /var/tmp/to_scwrl_359739949.seq -o /var/tmp/from_scwrl_359739949.pdb > /var/tmp/scwrl_359739949.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_359739949.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS2-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_470764115.pdb -s /var/tmp/to_scwrl_470764115.seq -o /var/tmp/from_scwrl_470764115.pdb > /var/tmp/scwrl_470764115.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_470764115.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS3-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # Found a chain break before 91 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1617128600.pdb -s /var/tmp/to_scwrl_1617128600.seq -o /var/tmp/from_scwrl_1617128600.pdb > /var/tmp/scwrl_1617128600.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1617128600.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS4-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1449770652.pdb -s /var/tmp/to_scwrl_1449770652.seq -o /var/tmp/from_scwrl_1449770652.pdb > /var/tmp/scwrl_1449770652.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1449770652.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS5-scwrl # ReadConformPDB reading from PDB file servers/Frankenstein_TS1.pdb.gz looking for model 1 # Found a chain break before 65 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_586521023.pdb -s /var/tmp/to_scwrl_586521023.seq -o /var/tmp/from_scwrl_586521023.pdb > /var/tmp/scwrl_586521023.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_586521023.pdb # conformation set from SCWRL output # naming current conformation Frankenstein_TS1-scwrl # ReadConformPDB reading from PDB file servers/Frankenstein_TS2.pdb.gz looking for model 1 # Found a chain break before 66 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1656285308.pdb -s /var/tmp/to_scwrl_1656285308.seq -o /var/tmp/from_scwrl_1656285308.pdb > /var/tmp/scwrl_1656285308.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1656285308.pdb # conformation set from SCWRL output # naming current conformation Frankenstein_TS2-scwrl # ReadConformPDB reading from PDB file servers/Frankenstein_TS3.pdb.gz looking for model 1 # Found a chain break before 42 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_789951398.pdb -s /var/tmp/to_scwrl_789951398.seq -o /var/tmp/from_scwrl_789951398.pdb > /var/tmp/scwrl_789951398.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_789951398.pdb # conformation set from SCWRL output # naming current conformation Frankenstein_TS3-scwrl # ReadConformPDB reading from PDB file servers/Frankenstein_TS4.pdb.gz looking for model 1 # Found a chain break before 78 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1659427205.pdb -s /var/tmp/to_scwrl_1659427205.seq -o /var/tmp/from_scwrl_1659427205.pdb > /var/tmp/scwrl_1659427205.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1659427205.pdb # conformation set from SCWRL output # naming current conformation Frankenstein_TS4-scwrl # ReadConformPDB reading from PDB file servers/Frankenstein_TS5.pdb.gz looking for model 1 # Found a chain break before 42 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1106131230.pdb -s /var/tmp/to_scwrl_1106131230.seq -o /var/tmp/from_scwrl_1106131230.pdb > /var/tmp/scwrl_1106131230.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1106131230.pdb # conformation set from SCWRL output # naming current conformation Frankenstein_TS5-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # Found a chain break before 40 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1615536238.pdb -s /var/tmp/to_scwrl_1615536238.seq -o /var/tmp/from_scwrl_1615536238.pdb > /var/tmp/scwrl_1615536238.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1615536238.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS1-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1 # Found a chain break before 65 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1797661117.pdb -s /var/tmp/to_scwrl_1797661117.seq -o /var/tmp/from_scwrl_1797661117.pdb > /var/tmp/scwrl_1797661117.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1797661117.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS2-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1 # Found a chain break before 79 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1033340419.pdb -s /var/tmp/to_scwrl_1033340419.seq -o /var/tmp/from_scwrl_1033340419.pdb > /var/tmp/scwrl_1033340419.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1033340419.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS3-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_997977532.pdb -s /var/tmp/to_scwrl_997977532.seq -o /var/tmp/from_scwrl_997977532.pdb > /var/tmp/scwrl_997977532.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_997977532.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS4-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_125201620.pdb -s /var/tmp/to_scwrl_125201620.seq -o /var/tmp/from_scwrl_125201620.pdb > /var/tmp/scwrl_125201620.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_125201620.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS5-scwrl # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # Found a chain break before 65 # copying to AlignedFragments data structure # naming current conformation HHpred1_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1096714117.pdb -s /var/tmp/to_scwrl_1096714117.seq -o /var/tmp/from_scwrl_1096714117.pdb > /var/tmp/scwrl_1096714117.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1096714117.pdb # conformation set from SCWRL output # naming current conformation HHpred1_TS1-scwrl # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # naming current conformation HHpred2_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_2048254796.pdb -s /var/tmp/to_scwrl_2048254796.seq -o /var/tmp/from_scwrl_2048254796.pdb > /var/tmp/scwrl_2048254796.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2048254796.pdb # conformation set from SCWRL output # naming current conformation HHpred2_TS1-scwrl # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # Found a chain break before 90 # copying to AlignedFragments data structure # naming current conformation HHpred3_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_880357035.pdb -s /var/tmp/to_scwrl_880357035.seq -o /var/tmp/from_scwrl_880357035.pdb > /var/tmp/scwrl_880357035.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_880357035.pdb # conformation set from SCWRL output # naming current conformation HHpred3_TS1-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Huber-Torda-Server_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_2041469026.pdb -s /var/tmp/to_scwrl_2041469026.seq -o /var/tmp/from_scwrl_2041469026.pdb > /var/tmp/scwrl_2041469026.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2041469026.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_138947375.pdb -s /var/tmp/to_scwrl_138947375.seq -o /var/tmp/from_scwrl_138947375.pdb > /var/tmp/scwrl_138947375.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_138947375.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1732359722.pdb -s /var/tmp/to_scwrl_1732359722.seq -o /var/tmp/from_scwrl_1732359722.pdb > /var/tmp/scwrl_1732359722.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1732359722.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1093426659.pdb -s /var/tmp/to_scwrl_1093426659.seq -o /var/tmp/from_scwrl_1093426659.pdb > /var/tmp/scwrl_1093426659.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1093426659.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS5-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # Found a chain break before 33 # copying to AlignedFragments data structure # naming current conformation LOOPP_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_5288507.pdb -s /var/tmp/to_scwrl_5288507.seq -o /var/tmp/from_scwrl_5288507.pdb > /var/tmp/scwrl_5288507.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_5288507.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS1-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # naming current conformation LOOPP_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_732656875.pdb -s /var/tmp/to_scwrl_732656875.seq -o /var/tmp/from_scwrl_732656875.pdb > /var/tmp/scwrl_732656875.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_732656875.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS2-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # naming current conformation LOOPP_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_979876583.pdb -s /var/tmp/to_scwrl_979876583.seq -o /var/tmp/from_scwrl_979876583.pdb > /var/tmp/scwrl_979876583.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_979876583.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS3-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # naming current conformation LOOPP_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_2061784789.pdb -s /var/tmp/to_scwrl_2061784789.seq -o /var/tmp/from_scwrl_2061784789.pdb > /var/tmp/scwrl_2061784789.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2061784789.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS4-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # naming current conformation LOOPP_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1553226798.pdb -s /var/tmp/to_scwrl_1553226798.seq -o /var/tmp/from_scwrl_1553226798.pdb > /var/tmp/scwrl_1553226798.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1553226798.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS5-scwrl # ReadConformPDB reading from PDB file servers/MIG_FROST_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # naming current conformation MIG_FROST_AL1 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1991570590.pdb -s /var/tmp/to_scwrl_1991570590.seq -o /var/tmp/from_scwrl_1991570590.pdb > /var/tmp/scwrl_1991570590.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1991570590.pdb # conformation set from SCWRL output # naming current conformation MIG_FROST_AL1-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS1.pdb.gz looking for model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1487563895.pdb -s /var/tmp/to_scwrl_1487563895.seq -o /var/tmp/from_scwrl_1487563895.pdb > /var/tmp/scwrl_1487563895.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1487563895.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server2_TS1-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS2.pdb.gz looking for model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_366534182.pdb -s /var/tmp/to_scwrl_366534182.seq -o /var/tmp/from_scwrl_366534182.pdb > /var/tmp/scwrl_366534182.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_366534182.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server2_TS2-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS3.pdb.gz looking for model 1 # Found a chain break before 82 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1798251333.pdb -s /var/tmp/to_scwrl_1798251333.seq -o /var/tmp/from_scwrl_1798251333.pdb > /var/tmp/scwrl_1798251333.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1798251333.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server2_TS3-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS4.pdb.gz looking for model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1744504500.pdb -s /var/tmp/to_scwrl_1744504500.seq -o /var/tmp/from_scwrl_1744504500.pdb > /var/tmp/scwrl_1744504500.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1744504500.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server2_TS4-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS5.pdb.gz looking for model 1 # Found a chain break before 65 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_726274131.pdb -s /var/tmp/to_scwrl_726274131.seq -o /var/tmp/from_scwrl_726274131.pdb > /var/tmp/scwrl_726274131.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_726274131.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server2_TS5-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_121531802.pdb -s /var/tmp/to_scwrl_121531802.seq -o /var/tmp/from_scwrl_121531802.pdb > /var/tmp/scwrl_121531802.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_121531802.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1214149453.pdb -s /var/tmp/to_scwrl_1214149453.seq -o /var/tmp/from_scwrl_1214149453.pdb > /var/tmp/scwrl_1214149453.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1214149453.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # Found a chain break before 65 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_28561136.pdb -s /var/tmp/to_scwrl_28561136.seq -o /var/tmp/from_scwrl_28561136.pdb > /var/tmp/scwrl_28561136.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_28561136.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 65 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_708052825.pdb -s /var/tmp/to_scwrl_708052825.seq -o /var/tmp/from_scwrl_708052825.pdb > /var/tmp/scwrl_708052825.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_708052825.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # Found a chain break before 65 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_722951115.pdb -s /var/tmp/to_scwrl_722951115.seq -o /var/tmp/from_scwrl_722951115.pdb > /var/tmp/scwrl_722951115.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_722951115.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS5-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_818512534.pdb -s /var/tmp/to_scwrl_818512534.seq -o /var/tmp/from_scwrl_818512534.pdb > /var/tmp/scwrl_818512534.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_818512534.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS1-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_219996383.pdb -s /var/tmp/to_scwrl_219996383.seq -o /var/tmp/from_scwrl_219996383.pdb > /var/tmp/scwrl_219996383.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_219996383.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS2-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1829082345.pdb -s /var/tmp/to_scwrl_1829082345.seq -o /var/tmp/from_scwrl_1829082345.pdb > /var/tmp/scwrl_1829082345.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1829082345.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS3-scwrl # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # Found a chain break before 33 # copying to AlignedFragments data structure # naming current conformation NN_PUT_lab_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_286565125.pdb -s /var/tmp/to_scwrl_286565125.seq -o /var/tmp/from_scwrl_286565125.pdb > /var/tmp/scwrl_286565125.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_286565125.pdb # conformation set from SCWRL output # naming current conformation NN_PUT_lab_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_2017657500.pdb -s /var/tmp/to_scwrl_2017657500.seq -o /var/tmp/from_scwrl_2017657500.pdb > /var/tmp/scwrl_2017657500.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2017657500.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_714939117.pdb -s /var/tmp/to_scwrl_714939117.seq -o /var/tmp/from_scwrl_714939117.pdb > /var/tmp/scwrl_714939117.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_714939117.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS2-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1284542656.pdb -s /var/tmp/to_scwrl_1284542656.seq -o /var/tmp/from_scwrl_1284542656.pdb > /var/tmp/scwrl_1284542656.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1284542656.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS3-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_2142859121.pdb -s /var/tmp/to_scwrl_2142859121.seq -o /var/tmp/from_scwrl_2142859121.pdb > /var/tmp/scwrl_2142859121.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2142859121.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS4-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1811653234.pdb -s /var/tmp/to_scwrl_1811653234.seq -o /var/tmp/from_scwrl_1811653234.pdb > /var/tmp/scwrl_1811653234.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1811653234.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS5-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1185313805.pdb -s /var/tmp/to_scwrl_1185313805.seq -o /var/tmp/from_scwrl_1185313805.pdb > /var/tmp/scwrl_1185313805.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1185313805.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # Found a chain break before 42 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_875732509.pdb -s /var/tmp/to_scwrl_875732509.seq -o /var/tmp/from_scwrl_875732509.pdb > /var/tmp/scwrl_875732509.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_875732509.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS2-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # Found a chain break before 61 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1705638614.pdb -s /var/tmp/to_scwrl_1705638614.seq -o /var/tmp/from_scwrl_1705638614.pdb > /var/tmp/scwrl_1705638614.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1705638614.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS3-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # Found a chain break before 42 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1324261180.pdb -s /var/tmp/to_scwrl_1324261180.seq -o /var/tmp/from_scwrl_1324261180.pdb > /var/tmp/scwrl_1324261180.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1324261180.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS4-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_460608584.pdb -s /var/tmp/to_scwrl_460608584.seq -o /var/tmp/from_scwrl_460608584.pdb > /var/tmp/scwrl_460608584.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_460608584.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS5-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Pcons6_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_651581627.pdb -s /var/tmp/to_scwrl_651581627.seq -o /var/tmp/from_scwrl_651581627.pdb > /var/tmp/scwrl_651581627.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_651581627.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS1-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Pcons6_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1329549687.pdb -s /var/tmp/to_scwrl_1329549687.seq -o /var/tmp/from_scwrl_1329549687.pdb > /var/tmp/scwrl_1329549687.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1329549687.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS2-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # naming current conformation Pcons6_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1193265459.pdb -s /var/tmp/to_scwrl_1193265459.seq -o /var/tmp/from_scwrl_1193265459.pdb > /var/tmp/scwrl_1193265459.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1193265459.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS3-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # naming current conformation Pcons6_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1631458209.pdb -s /var/tmp/to_scwrl_1631458209.seq -o /var/tmp/from_scwrl_1631458209.pdb > /var/tmp/scwrl_1631458209.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1631458209.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS4-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Pcons6_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1243850829.pdb -s /var/tmp/to_scwrl_1243850829.seq -o /var/tmp/from_scwrl_1243850829.pdb > /var/tmp/scwrl_1243850829.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1243850829.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS5-scwrl # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_599008611.pdb -s /var/tmp/to_scwrl_599008611.seq -o /var/tmp/from_scwrl_599008611.pdb > /var/tmp/scwrl_599008611.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_599008611.pdb # conformation set from SCWRL output # naming current conformation Phyre-1_TS1-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1475545152.pdb -s /var/tmp/to_scwrl_1475545152.seq -o /var/tmp/from_scwrl_1475545152.pdb > /var/tmp/scwrl_1475545152.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1475545152.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS1-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_583931079.pdb -s /var/tmp/to_scwrl_583931079.seq -o /var/tmp/from_scwrl_583931079.pdb > /var/tmp/scwrl_583931079.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_583931079.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS2-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_965542793.pdb -s /var/tmp/to_scwrl_965542793.seq -o /var/tmp/from_scwrl_965542793.pdb > /var/tmp/scwrl_965542793.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_965542793.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS3-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1126312839.pdb -s /var/tmp/to_scwrl_1126312839.seq -o /var/tmp/from_scwrl_1126312839.pdb > /var/tmp/scwrl_1126312839.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1126312839.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS4-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_180951932.pdb -s /var/tmp/to_scwrl_180951932.seq -o /var/tmp/from_scwrl_180951932.pdb > /var/tmp/scwrl_180951932.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_180951932.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS5-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # Found a chain break before 81 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1691816924.pdb -s /var/tmp/to_scwrl_1691816924.seq -o /var/tmp/from_scwrl_1691816924.pdb > /var/tmp/scwrl_1691816924.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1691816924.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS1-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # Found a chain break before 81 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1247844641.pdb -s /var/tmp/to_scwrl_1247844641.seq -o /var/tmp/from_scwrl_1247844641.pdb > /var/tmp/scwrl_1247844641.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1247844641.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS2-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # Found a chain break before 81 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1395101385.pdb -s /var/tmp/to_scwrl_1395101385.seq -o /var/tmp/from_scwrl_1395101385.pdb > /var/tmp/scwrl_1395101385.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1395101385.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS3-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1720378060.pdb -s /var/tmp/to_scwrl_1720378060.seq -o /var/tmp/from_scwrl_1720378060.pdb > /var/tmp/scwrl_1720378060.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1720378060.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS4-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1955897466.pdb -s /var/tmp/to_scwrl_1955897466.seq -o /var/tmp/from_scwrl_1955897466.pdb > /var/tmp/scwrl_1955897466.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1955897466.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # Found a chain break before 67 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_2118052500.pdb -s /var/tmp/to_scwrl_2118052500.seq -o /var/tmp/from_scwrl_2118052500.pdb > /var/tmp/scwrl_2118052500.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2118052500.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # naming current conformation RAPTOR-ACE_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_391406948.pdb -s /var/tmp/to_scwrl_391406948.seq -o /var/tmp/from_scwrl_391406948.pdb > /var/tmp/scwrl_391406948.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_391406948.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_28410202.pdb -s /var/tmp/to_scwrl_28410202.seq -o /var/tmp/from_scwrl_28410202.pdb > /var/tmp/scwrl_28410202.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_28410202.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # Found a chain break before 79 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1799651199.pdb -s /var/tmp/to_scwrl_1799651199.seq -o /var/tmp/from_scwrl_1799651199.pdb > /var/tmp/scwrl_1799651199.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1799651199.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # naming current conformation RAPTOR-ACE_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_677972073.pdb -s /var/tmp/to_scwrl_677972073.seq -o /var/tmp/from_scwrl_677972073.pdb > /var/tmp/scwrl_677972073.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_677972073.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_2046067702.pdb -s /var/tmp/to_scwrl_2046067702.seq -o /var/tmp/from_scwrl_2046067702.pdb > /var/tmp/scwrl_2046067702.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2046067702.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 89 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_367106669.pdb -s /var/tmp/to_scwrl_367106669.seq -o /var/tmp/from_scwrl_367106669.pdb > /var/tmp/scwrl_367106669.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_367106669.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 89 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1962514730.pdb -s /var/tmp/to_scwrl_1962514730.seq -o /var/tmp/from_scwrl_1962514730.pdb > /var/tmp/scwrl_1962514730.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1962514730.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 89 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_2041443176.pdb -s /var/tmp/to_scwrl_2041443176.seq -o /var/tmp/from_scwrl_2041443176.pdb > /var/tmp/scwrl_2041443176.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2041443176.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 89 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_31276257.pdb -s /var/tmp/to_scwrl_31276257.seq -o /var/tmp/from_scwrl_31276257.pdb > /var/tmp/scwrl_31276257.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_31276257.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # Found a chain break before 67 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1000344889.pdb -s /var/tmp/to_scwrl_1000344889.seq -o /var/tmp/from_scwrl_1000344889.pdb > /var/tmp/scwrl_1000344889.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1000344889.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # Found a chain break before 67 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_769692039.pdb -s /var/tmp/to_scwrl_769692039.seq -o /var/tmp/from_scwrl_769692039.pdb > /var/tmp/scwrl_769692039.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_769692039.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 67 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1736914871.pdb -s /var/tmp/to_scwrl_1736914871.seq -o /var/tmp/from_scwrl_1736914871.pdb > /var/tmp/scwrl_1736914871.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1736914871.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # Found a chain break before 67 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_177122423.pdb -s /var/tmp/to_scwrl_177122423.seq -o /var/tmp/from_scwrl_177122423.pdb > /var/tmp/scwrl_177122423.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_177122423.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 67 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1230300622.pdb -s /var/tmp/to_scwrl_1230300622.seq -o /var/tmp/from_scwrl_1230300622.pdb > /var/tmp/scwrl_1230300622.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1230300622.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS5-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # Found a chain break before 81 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_241012851.pdb -s /var/tmp/to_scwrl_241012851.seq -o /var/tmp/from_scwrl_241012851.pdb > /var/tmp/scwrl_241012851.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_241012851.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS1-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # Found a chain break before 81 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1506672110.pdb -s /var/tmp/to_scwrl_1506672110.seq -o /var/tmp/from_scwrl_1506672110.pdb > /var/tmp/scwrl_1506672110.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1506672110.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS2-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # Found a chain break before 81 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_276082435.pdb -s /var/tmp/to_scwrl_276082435.seq -o /var/tmp/from_scwrl_276082435.pdb > /var/tmp/scwrl_276082435.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_276082435.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS3-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # Found a chain break before 81 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1872471061.pdb -s /var/tmp/to_scwrl_1872471061.seq -o /var/tmp/from_scwrl_1872471061.pdb > /var/tmp/scwrl_1872471061.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1872471061.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS4-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # Found a chain break before 81 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_603039294.pdb -s /var/tmp/to_scwrl_603039294.seq -o /var/tmp/from_scwrl_603039294.pdb > /var/tmp/scwrl_603039294.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_603039294.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS5-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # Found a chain break before 65 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_875091046.pdb -s /var/tmp/to_scwrl_875091046.seq -o /var/tmp/from_scwrl_875091046.pdb > /var/tmp/scwrl_875091046.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_875091046.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS1-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # Found a chain break before 67 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1200532566.pdb -s /var/tmp/to_scwrl_1200532566.seq -o /var/tmp/from_scwrl_1200532566.pdb > /var/tmp/scwrl_1200532566.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1200532566.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS2-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 # Found a chain break before 66 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1186970372.pdb -s /var/tmp/to_scwrl_1186970372.seq -o /var/tmp/from_scwrl_1186970372.pdb > /var/tmp/scwrl_1186970372.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1186970372.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS3-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1 # Found a chain break before 67 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1840633839.pdb -s /var/tmp/to_scwrl_1840633839.seq -o /var/tmp/from_scwrl_1840633839.pdb > /var/tmp/scwrl_1840633839.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1840633839.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS4-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS5.pdb.gz looking for model 1 # Found a chain break before 82 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_179361759.pdb -s /var/tmp/to_scwrl_179361759.seq -o /var/tmp/from_scwrl_179361759.pdb > /var/tmp/scwrl_179361759.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_179361759.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS5-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1367922304.pdb -s /var/tmp/to_scwrl_1367922304.seq -o /var/tmp/from_scwrl_1367922304.pdb > /var/tmp/scwrl_1367922304.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1367922304.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL1-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 Skipped atom 15, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL2.pdb.gz Skipped atom 296, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL2.pdb.gz Skipped atom 308, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL2.pdb.gz Skipped atom 310, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL2.pdb.gz Skipped atom 312, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL2.pdb.gz Skipped atom 314, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL2.pdb.gz Skipped atom 316, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL2.pdb.gz Skipped atom 318, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL2.pdb.gz Skipped atom 320, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL2.pdb.gz Skipped atom 322, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL2.pdb.gz Skipped atom 324, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL2.pdb.gz Skipped atom 326, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL2.pdb.gz Skipped atom 328, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL2.pdb.gz Skipped atom 330, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL2.pdb.gz Skipped atom 332, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL2.pdb.gz Skipped atom 334, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL2.pdb.gz # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1384967116.pdb -s /var/tmp/to_scwrl_1384967116.seq -o /var/tmp/from_scwrl_1384967116.pdb > /var/tmp/scwrl_1384967116.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1384967116.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL2-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1427206400.pdb -s /var/tmp/to_scwrl_1427206400.seq -o /var/tmp/from_scwrl_1427206400.pdb > /var/tmp/scwrl_1427206400.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1427206400.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL3-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_615540043.pdb -s /var/tmp/to_scwrl_615540043.seq -o /var/tmp/from_scwrl_615540043.pdb > /var/tmp/scwrl_615540043.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_615540043.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL4-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL5 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_957861530.pdb -s /var/tmp/to_scwrl_957861530.seq -o /var/tmp/from_scwrl_957861530.pdb > /var/tmp/scwrl_957861530.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_957861530.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL5-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL1.pdb.gz looking for model 1 Skipped atom 7, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL1.pdb.gz Skipped atom 320, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL1.pdb.gz # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL1 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1235620219.pdb -s /var/tmp/to_scwrl_1235620219.seq -o /var/tmp/from_scwrl_1235620219.pdb > /var/tmp/scwrl_1235620219.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1235620219.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL1-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL2 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_586108896.pdb -s /var/tmp/to_scwrl_586108896.seq -o /var/tmp/from_scwrl_586108896.pdb > /var/tmp/scwrl_586108896.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_586108896.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL2-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL3 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1349268477.pdb -s /var/tmp/to_scwrl_1349268477.seq -o /var/tmp/from_scwrl_1349268477.pdb > /var/tmp/scwrl_1349268477.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1349268477.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL3-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL4 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1264030421.pdb -s /var/tmp/to_scwrl_1264030421.seq -o /var/tmp/from_scwrl_1264030421.pdb > /var/tmp/scwrl_1264030421.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1264030421.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL4-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL5 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_238276448.pdb -s /var/tmp/to_scwrl_238276448.seq -o /var/tmp/from_scwrl_238276448.pdb > /var/tmp/scwrl_238276448.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_238276448.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL5-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_2027240551.pdb -s /var/tmp/to_scwrl_2027240551.seq -o /var/tmp/from_scwrl_2027240551.pdb > /var/tmp/scwrl_2027240551.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2027240551.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS1-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1162614477.pdb -s /var/tmp/to_scwrl_1162614477.seq -o /var/tmp/from_scwrl_1162614477.pdb > /var/tmp/scwrl_1162614477.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1162614477.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS2-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_605383118.pdb -s /var/tmp/to_scwrl_605383118.seq -o /var/tmp/from_scwrl_605383118.pdb > /var/tmp/scwrl_605383118.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_605383118.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS3-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1842271634.pdb -s /var/tmp/to_scwrl_1842271634.seq -o /var/tmp/from_scwrl_1842271634.pdb > /var/tmp/scwrl_1842271634.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1842271634.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS4-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1056574007.pdb -s /var/tmp/to_scwrl_1056574007.seq -o /var/tmp/from_scwrl_1056574007.pdb > /var/tmp/scwrl_1056574007.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1056574007.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS5-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # naming current conformation SP3_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_636659375.pdb -s /var/tmp/to_scwrl_636659375.seq -o /var/tmp/from_scwrl_636659375.pdb > /var/tmp/scwrl_636659375.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_636659375.pdb # conformation set from SCWRL output # naming current conformation SP3_TS1-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # Found a chain break before 65 # copying to AlignedFragments data structure # naming current conformation SP3_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_695132876.pdb -s /var/tmp/to_scwrl_695132876.seq -o /var/tmp/from_scwrl_695132876.pdb > /var/tmp/scwrl_695132876.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_695132876.pdb # conformation set from SCWRL output # naming current conformation SP3_TS2-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 51 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1826266045.pdb -s /var/tmp/to_scwrl_1826266045.seq -o /var/tmp/from_scwrl_1826266045.pdb > /var/tmp/scwrl_1826266045.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1826266045.pdb # conformation set from SCWRL output # naming current conformation SP3_TS3-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 84 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_226090599.pdb -s /var/tmp/to_scwrl_226090599.seq -o /var/tmp/from_scwrl_226090599.pdb > /var/tmp/scwrl_226090599.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_226090599.pdb # conformation set from SCWRL output # naming current conformation SP3_TS4-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # naming current conformation SP3_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_872255299.pdb -s /var/tmp/to_scwrl_872255299.seq -o /var/tmp/from_scwrl_872255299.pdb > /var/tmp/scwrl_872255299.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_872255299.pdb # conformation set from SCWRL output # naming current conformation SP3_TS5-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # naming current conformation SP4_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_909083022.pdb -s /var/tmp/to_scwrl_909083022.seq -o /var/tmp/from_scwrl_909083022.pdb > /var/tmp/scwrl_909083022.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_909083022.pdb # conformation set from SCWRL output # naming current conformation SP4_TS1-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 84 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_467103450.pdb -s /var/tmp/to_scwrl_467103450.seq -o /var/tmp/from_scwrl_467103450.pdb > /var/tmp/scwrl_467103450.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_467103450.pdb # conformation set from SCWRL output # naming current conformation SP4_TS2-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # Found a chain break before 65 # copying to AlignedFragments data structure # naming current conformation SP4_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_231443763.pdb -s /var/tmp/to_scwrl_231443763.seq -o /var/tmp/from_scwrl_231443763.pdb > /var/tmp/scwrl_231443763.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_231443763.pdb # conformation set from SCWRL output # naming current conformation SP4_TS3-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1185165456.pdb -s /var/tmp/to_scwrl_1185165456.seq -o /var/tmp/from_scwrl_1185165456.pdb > /var/tmp/scwrl_1185165456.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1185165456.pdb # conformation set from SCWRL output # naming current conformation SP4_TS4-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 51 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_192090864.pdb -s /var/tmp/to_scwrl_192090864.seq -o /var/tmp/from_scwrl_192090864.pdb > /var/tmp/scwrl_192090864.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_192090864.pdb # conformation set from SCWRL output # naming current conformation SP4_TS5-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # Found a chain break before 65 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_834483057.pdb -s /var/tmp/to_scwrl_834483057.seq -o /var/tmp/from_scwrl_834483057.pdb > /var/tmp/scwrl_834483057.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_834483057.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS1-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 84 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_2060256503.pdb -s /var/tmp/to_scwrl_2060256503.seq -o /var/tmp/from_scwrl_2060256503.pdb > /var/tmp/scwrl_2060256503.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2060256503.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS2-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 65 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1392623431.pdb -s /var/tmp/to_scwrl_1392623431.seq -o /var/tmp/from_scwrl_1392623431.pdb > /var/tmp/scwrl_1392623431.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1392623431.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS3-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_2021453429.pdb -s /var/tmp/to_scwrl_2021453429.seq -o /var/tmp/from_scwrl_2021453429.pdb > /var/tmp/scwrl_2021453429.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2021453429.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS4-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # Found a chain break before 65 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1753406695.pdb -s /var/tmp/to_scwrl_1753406695.seq -o /var/tmp/from_scwrl_1753406695.pdb > /var/tmp/scwrl_1753406695.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1753406695.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS5-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_bnmx_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1571985190.pdb -s /var/tmp/to_scwrl_1571985190.seq -o /var/tmp/from_scwrl_1571985190.pdb > /var/tmp/scwrl_1571985190.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1571985190.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_bnmx_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1241892086.pdb -s /var/tmp/to_scwrl_1241892086.seq -o /var/tmp/from_scwrl_1241892086.pdb > /var/tmp/scwrl_1241892086.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1241892086.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS2-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_990890165.pdb -s /var/tmp/to_scwrl_990890165.seq -o /var/tmp/from_scwrl_990890165.pdb > /var/tmp/scwrl_990890165.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_990890165.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS3-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_bnmx_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_851707945.pdb -s /var/tmp/to_scwrl_851707945.seq -o /var/tmp/from_scwrl_851707945.pdb > /var/tmp/scwrl_851707945.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_851707945.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS4-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1857432129.pdb -s /var/tmp/to_scwrl_1857432129.seq -o /var/tmp/from_scwrl_1857432129.pdb > /var/tmp/scwrl_1857432129.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1857432129.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS5-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_expm_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1948751694.pdb -s /var/tmp/to_scwrl_1948751694.seq -o /var/tmp/from_scwrl_1948751694.pdb > /var/tmp/scwrl_1948751694.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1948751694.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_expm_TS1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 Skipped atom 11, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL1.pdb.gz Skipped atom 364, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL1.pdb.gz # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_sfst_AL1 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_2087328164.pdb -s /var/tmp/to_scwrl_2087328164.seq -o /var/tmp/from_scwrl_2087328164.pdb > /var/tmp/scwrl_2087328164.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2087328164.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_sfst_AL2 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_296057378.pdb -s /var/tmp/to_scwrl_296057378.seq -o /var/tmp/from_scwrl_296057378.pdb > /var/tmp/scwrl_296057378.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_296057378.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL2-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL3 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1150536525.pdb -s /var/tmp/to_scwrl_1150536525.seq -o /var/tmp/from_scwrl_1150536525.pdb > /var/tmp/scwrl_1150536525.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1150536525.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL3-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_sfst_AL4 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1203874939.pdb -s /var/tmp/to_scwrl_1203874939.seq -o /var/tmp/from_scwrl_1203874939.pdb > /var/tmp/scwrl_1203874939.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1203874939.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL4-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL5 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_534333827.pdb -s /var/tmp/to_scwrl_534333827.seq -o /var/tmp/from_scwrl_534333827.pdb > /var/tmp/scwrl_534333827.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_534333827.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL5-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 51 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1030293430.pdb -s /var/tmp/to_scwrl_1030293430.seq -o /var/tmp/from_scwrl_1030293430.pdb > /var/tmp/scwrl_1030293430.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1030293430.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_219005770.pdb -s /var/tmp/to_scwrl_219005770.seq -o /var/tmp/from_scwrl_219005770.pdb > /var/tmp/scwrl_219005770.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_219005770.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 90 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1139716944.pdb -s /var/tmp/to_scwrl_1139716944.seq -o /var/tmp/from_scwrl_1139716944.pdb > /var/tmp/scwrl_1139716944.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1139716944.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_725081417.pdb -s /var/tmp/to_scwrl_725081417.seq -o /var/tmp/from_scwrl_725081417.pdb > /var/tmp/scwrl_725081417.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_725081417.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1275579776.pdb -s /var/tmp/to_scwrl_1275579776.seq -o /var/tmp/from_scwrl_1275579776.pdb > /var/tmp/scwrl_1275579776.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1275579776.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS5-scwrl # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # naming current conformation beautshot_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1776376319.pdb -s /var/tmp/to_scwrl_1776376319.seq -o /var/tmp/from_scwrl_1776376319.pdb > /var/tmp/scwrl_1776376319.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1776376319.pdb # conformation set from SCWRL output # naming current conformation beautshot_TS1-scwrl # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # naming current conformation beautshotbase_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1420214292.pdb -s /var/tmp/to_scwrl_1420214292.seq -o /var/tmp/from_scwrl_1420214292.pdb > /var/tmp/scwrl_1420214292.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1420214292.pdb # conformation set from SCWRL output # naming current conformation beautshotbase_TS1-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation forecast-s_AL1 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_954362176.pdb -s /var/tmp/to_scwrl_954362176.seq -o /var/tmp/from_scwrl_954362176.pdb > /var/tmp/scwrl_954362176.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_954362176.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL1-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation forecast-s_AL2 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_2002466918.pdb -s /var/tmp/to_scwrl_2002466918.seq -o /var/tmp/from_scwrl_2002466918.pdb > /var/tmp/scwrl_2002466918.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2002466918.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL2-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # naming current conformation forecast-s_AL3 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_144985945.pdb -s /var/tmp/to_scwrl_144985945.seq -o /var/tmp/from_scwrl_144985945.pdb > /var/tmp/scwrl_144985945.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_144985945.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL3-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # naming current conformation forecast-s_AL4 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1863445197.pdb -s /var/tmp/to_scwrl_1863445197.seq -o /var/tmp/from_scwrl_1863445197.pdb > /var/tmp/scwrl_1863445197.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1863445197.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL4-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_322086721.pdb -s /var/tmp/to_scwrl_322086721.seq -o /var/tmp/from_scwrl_322086721.pdb > /var/tmp/scwrl_322086721.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_322086721.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # Found a chain break before 67 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_376429708.pdb -s /var/tmp/to_scwrl_376429708.seq -o /var/tmp/from_scwrl_376429708.pdb > /var/tmp/scwrl_376429708.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_376429708.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # Found a chain break before 59 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_901127007.pdb -s /var/tmp/to_scwrl_901127007.seq -o /var/tmp/from_scwrl_901127007.pdb > /var/tmp/scwrl_901127007.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_901127007.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # Found a chain break before 68 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_514177586.pdb -s /var/tmp/to_scwrl_514177586.seq -o /var/tmp/from_scwrl_514177586.pdb > /var/tmp/scwrl_514177586.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_514177586.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # Found a chain break before 82 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1210912764.pdb -s /var/tmp/to_scwrl_1210912764.seq -o /var/tmp/from_scwrl_1210912764.pdb > /var/tmp/scwrl_1210912764.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1210912764.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # Found a chain break before 79 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_813899863.pdb -s /var/tmp/to_scwrl_813899863.seq -o /var/tmp/from_scwrl_813899863.pdb > /var/tmp/scwrl_813899863.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_813899863.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1906801017.pdb -s /var/tmp/to_scwrl_1906801017.seq -o /var/tmp/from_scwrl_1906801017.pdb > /var/tmp/scwrl_1906801017.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1906801017.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS2.pdb.gz looking for model 1 WARNING: atoms too close: (T0359)M90.O and (T0359)R91.N only 0.000 apart, marking (T0359)R91.N as missing # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1084882546.pdb -s /var/tmp/to_scwrl_1084882546.seq -o /var/tmp/from_scwrl_1084882546.pdb > /var/tmp/scwrl_1084882546.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1084882546.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS3.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_419822911.pdb -s /var/tmp/to_scwrl_419822911.seq -o /var/tmp/from_scwrl_419822911.pdb > /var/tmp/scwrl_419822911.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_419822911.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS4.pdb.gz looking for model 1 WARNING: atoms too close: (T0359)T11.O and (T0359)K12.N only 0.000 apart, marking (T0359)K12.N as missing # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1331302560.pdb -s /var/tmp/to_scwrl_1331302560.seq -o /var/tmp/from_scwrl_1331302560.pdb > /var/tmp/scwrl_1331302560.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1331302560.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS5.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_179290986.pdb -s /var/tmp/to_scwrl_179290986.seq -o /var/tmp/from_scwrl_179290986.pdb > /var/tmp/scwrl_179290986.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_179290986.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1410713075.pdb -s /var/tmp/to_scwrl_1410713075.seq -o /var/tmp/from_scwrl_1410713075.pdb > /var/tmp/scwrl_1410713075.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1410713075.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_35526858.pdb -s /var/tmp/to_scwrl_35526858.seq -o /var/tmp/from_scwrl_35526858.pdb > /var/tmp/scwrl_35526858.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_35526858.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_2036723115.pdb -s /var/tmp/to_scwrl_2036723115.seq -o /var/tmp/from_scwrl_2036723115.pdb > /var/tmp/scwrl_2036723115.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2036723115.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1211981123.pdb -s /var/tmp/to_scwrl_1211981123.seq -o /var/tmp/from_scwrl_1211981123.pdb > /var/tmp/scwrl_1211981123.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1211981123.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_2122855023.pdb -s /var/tmp/to_scwrl_2122855023.seq -o /var/tmp/from_scwrl_2122855023.pdb > /var/tmp/scwrl_2122855023.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2122855023.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS5-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_185296846.pdb -s /var/tmp/to_scwrl_185296846.seq -o /var/tmp/from_scwrl_185296846.pdb > /var/tmp/scwrl_185296846.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_185296846.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS1-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_215034002.pdb -s /var/tmp/to_scwrl_215034002.seq -o /var/tmp/from_scwrl_215034002.pdb > /var/tmp/scwrl_215034002.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_215034002.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS2-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1179246315.pdb -s /var/tmp/to_scwrl_1179246315.seq -o /var/tmp/from_scwrl_1179246315.pdb > /var/tmp/scwrl_1179246315.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1179246315.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS3-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # Found a chain break before 90 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_719630673.pdb -s /var/tmp/to_scwrl_719630673.seq -o /var/tmp/from_scwrl_719630673.pdb > /var/tmp/scwrl_719630673.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_719630673.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS4-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # Found a chain break before 90 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1245327431.pdb -s /var/tmp/to_scwrl_1245327431.seq -o /var/tmp/from_scwrl_1245327431.pdb > /var/tmp/scwrl_1245327431.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1245327431.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS5-scwrl # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1398252085.pdb -s /var/tmp/to_scwrl_1398252085.seq -o /var/tmp/from_scwrl_1398252085.pdb > /var/tmp/scwrl_1398252085.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1398252085.pdb # conformation set from SCWRL output # naming current conformation mGen-3D_TS1-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # naming current conformation nFOLD_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1859347617.pdb -s /var/tmp/to_scwrl_1859347617.seq -o /var/tmp/from_scwrl_1859347617.pdb > /var/tmp/scwrl_1859347617.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1859347617.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS1-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # naming current conformation nFOLD_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1970408848.pdb -s /var/tmp/to_scwrl_1970408848.seq -o /var/tmp/from_scwrl_1970408848.pdb > /var/tmp/scwrl_1970408848.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1970408848.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS2-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation nFOLD_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_526348215.pdb -s /var/tmp/to_scwrl_526348215.seq -o /var/tmp/from_scwrl_526348215.pdb > /var/tmp/scwrl_526348215.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_526348215.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS3-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # naming current conformation nFOLD_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1488240289.pdb -s /var/tmp/to_scwrl_1488240289.seq -o /var/tmp/from_scwrl_1488240289.pdb > /var/tmp/scwrl_1488240289.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1488240289.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS4-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # naming current conformation nFOLD_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1243139493.pdb -s /var/tmp/to_scwrl_1243139493.seq -o /var/tmp/from_scwrl_1243139493.pdb > /var/tmp/scwrl_1243139493.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1243139493.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS5-scwrl # ReadConformPDB reading from PDB file servers/panther2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0359 can't currently be optimized by undertaker # naming current conformation panther2_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1480710390.pdb -s /var/tmp/to_scwrl_1480710390.seq -o /var/tmp/from_scwrl_1480710390.pdb > /var/tmp/scwrl_1480710390.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1480710390.pdb # conformation set from SCWRL output # naming current conformation panther2_TS1-scwrl # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # naming current conformation shub_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl -i /var/tmp/to_scwrl_1343223560.pdb -s /var/tmp/to_scwrl_1343223560.seq -o /var/tmp/from_scwrl_1343223560.pdb > /var/tmp/scwrl_1343223560.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1343223560.pdb # conformation set from SCWRL output # naming current conformation shub_TS1-scwrl # command:CPU_time= 23.1595 sec, elapsed time= 77.6856 sec) # command:# Prefix for output files set to decoys/ # command:# Will now start reporting costs to decoys/evaluate.rdb # command:# CostConform Warning: Couldn't open file decoys//projects/compbio/experiments/undertaker/spots/near-backbone-center.spot or decoys//projects/compbio/experiments/undertaker/spots/near-backbone-center.spot.gz for input Trying /projects/compbio/experiments/undertaker/spots/near-backbone-center.spot # Reading spots from /projects/compbio/experiments/undertaker/spots/near-backbone-center.spot shub_TS1-scwrl costs 0 real_cost = -167.14 shub_TS1 costs 0 real_cost = -170.982 panther2_TS1-scwrl costs 0 real_cost = -38.0684 panther2_TS1 costs 0 real_cost = -28.4035 nFOLD_TS5-scwrl costs 0 real_cost = -161.407 nFOLD_TS5 costs 0 real_cost = -111.429 nFOLD_TS4-scwrl costs 0 real_cost = -91.8419 nFOLD_TS4 costs 0 real_cost = -63.2963 nFOLD_TS3-scwrl costs 0 real_cost = -58.1835 nFOLD_TS3 costs 0 real_cost = -58.1924 nFOLD_TS2-scwrl costs 0 real_cost = -195.74 nFOLD_TS2 costs 0 real_cost = -163.337 nFOLD_TS1-scwrl costs 0 real_cost = -179.99 nFOLD_TS1 costs 0 real_cost = -132.593 mGen-3D_TS1-scwrl costs 0 real_cost = -148.407 mGen-3D_TS1 costs 0 real_cost = -100.063 keasar-server_TS5-scwrl costs 0 real_cost = -164.554 keasar-server_TS5 costs 0 real_cost = -154.669 keasar-server_TS4-scwrl costs 0 real_cost = -146.672 keasar-server_TS4 costs 0 real_cost = -165.479 keasar-server_TS3-scwrl costs 0 real_cost = -79.9553 keasar-server_TS3 costs 0 real_cost = -77.1151 keasar-server_TS2-scwrl costs 0 real_cost = -114.187 keasar-server_TS2 costs 0 real_cost = -86.0277 keasar-server_TS1-scwrl costs 0 real_cost = -114.187 keasar-server_TS1 costs 0 real_cost = -86.0277 karypis.srv_TS5-scwrl costs 0 real_cost = -9.55461 karypis.srv_TS5 costs 0 real_cost = -9.57619 karypis.srv_TS4-scwrl costs 0 real_cost = -106.116 karypis.srv_TS4 costs 0 real_cost = -114.585 karypis.srv_TS3-scwrl costs 0 real_cost = -102.91 karypis.srv_TS3 costs 0 real_cost = -100.954 karypis.srv_TS2-scwrl costs 0 real_cost = -177.138 karypis.srv_TS2 costs 0 real_cost = -178.326 karypis.srv_TS1-scwrl costs 0 real_cost = -116.805 karypis.srv_TS1 costs 0 real_cost = -116.707 karypis.srv.4_TS5-scwrl costs 0 real_cost = 280.588 karypis.srv.4_TS5 costs 0 real_cost = 280.6 karypis.srv.4_TS4-scwrl costs 0 real_cost = 295.121 karypis.srv.4_TS4 costs 0 real_cost = 295.088 karypis.srv.4_TS3-scwrl costs 0 real_cost = 301.908 karypis.srv.4_TS3 costs 0 real_cost = 301.927 karypis.srv.4_TS2-scwrl costs 0 real_cost = 258.669 karypis.srv.4_TS2 costs 0 real_cost = 263.549 karypis.srv.4_TS1-scwrl costs 0 real_cost = 249.32 karypis.srv.4_TS1 costs 0 real_cost = 252.803 karypis.srv.2_TS5-scwrl costs 0 real_cost = -188.589 karypis.srv.2_TS5 costs 0 real_cost = -190.749 karypis.srv.2_TS4-scwrl costs 0 real_cost = -125.897 karypis.srv.2_TS4 costs 0 real_cost = -127.962 karypis.srv.2_TS3-scwrl costs 0 real_cost = -100.704 karypis.srv.2_TS3 costs 0 real_cost = -98.0591 karypis.srv.2_TS2-scwrl costs 0 real_cost = -43.5296 karypis.srv.2_TS2 costs 0 real_cost = -43.4425 karypis.srv.2_TS1-scwrl costs 0 real_cost = -47.266 karypis.srv.2_TS1 costs 0 real_cost = -41.1763 forecast-s_AL5-scwrl costs 0 real_cost = -56.0414 forecast-s_AL5 costs 0 real_cost = -36.5796 forecast-s_AL4-scwrl costs 0 real_cost = -130.922 forecast-s_AL4 costs 0 real_cost = -82.9159 forecast-s_AL3-scwrl costs 0 real_cost = -161.382 forecast-s_AL3 costs 0 real_cost = -94.6754 forecast-s_AL2-scwrl costs 0 real_cost = 98.9503 forecast-s_AL2 costs 0 real_cost = 98.9503 forecast-s_AL1-scwrl costs 0 real_cost = -84.0532 forecast-s_AL1 costs 0 real_cost = -46.6158 beautshotbase_TS1-scwrl costs 0 real_cost = -170.253 beautshotbase_TS1 costs 0 real_cost = -172.071 beautshot_TS1-scwrl costs 0 real_cost = -170.126 beautshot_TS1 costs 0 real_cost = -167.6 Zhang-Server_TS5-scwrl costs 0 real_cost = -197.426 Zhang-Server_TS5 costs 0 real_cost = -197.438 Zhang-Server_TS4-scwrl costs 0 real_cost = -205.959 Zhang-Server_TS4 costs 0 real_cost = -205.991 Zhang-Server_TS3-scwrl costs 0 real_cost = -149.374 Zhang-Server_TS3 costs 0 real_cost = -149.38 Zhang-Server_TS2-scwrl costs 0 real_cost = -191.017 Zhang-Server_TS2 costs 0 real_cost = -191.017 Zhang-Server_TS1-scwrl costs 0 real_cost = -170.464 Zhang-Server_TS1 costs 0 real_cost = -170.161 UNI-EID_sfst_AL5-scwrl costs 0 real_cost = -83.7313 UNI-EID_sfst_AL5 costs 0 real_cost = -48.4317 UNI-EID_sfst_AL4-scwrl costs 0 real_cost = -128.671 UNI-EID_sfst_AL4 costs 0 real_cost = -93.0041 UNI-EID_sfst_AL3-scwrl costs 0 real_cost = -132.878 UNI-EID_sfst_AL3 costs 0 real_cost = -98.6088 UNI-EID_sfst_AL2-scwrl costs 0 real_cost = -77.2947 UNI-EID_sfst_AL2 costs 0 real_cost = -39.3335 UNI-EID_sfst_AL1-scwrl costs 0 real_cost = -155.339 UNI-EID_sfst_AL1 costs 0 real_cost = -94.2549 UNI-EID_expm_TS1-scwrl costs 0 real_cost = -88.5905 UNI-EID_expm_TS1 costs 0 real_cost = -88.6113 UNI-EID_bnmx_TS5-scwrl costs 0 real_cost = -87.893 UNI-EID_bnmx_TS5 costs 0 real_cost = -47.7837 UNI-EID_bnmx_TS4-scwrl costs 0 real_cost = -128.671 UNI-EID_bnmx_TS4 costs 0 real_cost = -93.0041 UNI-EID_bnmx_TS3-scwrl costs 0 real_cost = -154.344 UNI-EID_bnmx_TS3 costs 0 real_cost = -117.737 UNI-EID_bnmx_TS2-scwrl costs 0 real_cost = -84.0508 UNI-EID_bnmx_TS2 costs 0 real_cost = -46.6158 UNI-EID_bnmx_TS1-scwrl costs 0 real_cost = -155.339 UNI-EID_bnmx_TS1 costs 0 real_cost = -94.2549 SPARKS2_TS5-scwrl costs 0 real_cost = -142.142 SPARKS2_TS5 costs 0 real_cost = -133.093 SPARKS2_TS4-scwrl costs 0 real_cost = -146.875 SPARKS2_TS4 costs 0 real_cost = -132.739 SPARKS2_TS3-scwrl costs 0 real_cost = -155.917 SPARKS2_TS3 costs 0 real_cost = -161.966 SPARKS2_TS2-scwrl costs 0 real_cost = -95.858 SPARKS2_TS2 costs 0 real_cost = -85.5604 SPARKS2_TS1-scwrl costs 0 real_cost = -165.54 SPARKS2_TS1 costs 0 real_cost = -156.417 SP4_TS5-scwrl costs 0 real_cost = -154.229 SP4_TS5 costs 0 real_cost = -139.208 SP4_TS4-scwrl costs 0 real_cost = -141.797 SP4_TS4 costs 0 real_cost = -133.252 SP4_TS3-scwrl costs 0 real_cost = -151.263 SP4_TS3 costs 0 real_cost = -153.456 SP4_TS2-scwrl costs 0 real_cost = -95.858 SP4_TS2 costs 0 real_cost = -85.5604 SP4_TS1-scwrl costs 0 real_cost = -156.557 SP4_TS1 costs 0 real_cost = -151.538 SP3_TS5-scwrl costs 0 real_cost = -141.797 SP3_TS5 costs 0 real_cost = -133.252 SP3_TS4-scwrl costs 0 real_cost = -95.858 SP3_TS4 costs 0 real_cost = -85.5604 SP3_TS3-scwrl costs 0 real_cost = -154.229 SP3_TS3 costs 0 real_cost = -139.208 SP3_TS2-scwrl costs 0 real_cost = -154.163 SP3_TS2 costs 0 real_cost = -153.96 SP3_TS1-scwrl costs 0 real_cost = -156.557 SP3_TS1 costs 0 real_cost = -151.538 SAM_T06_server_TS5-scwrl costs 0 real_cost = -118.285 SAM_T06_server_TS5 costs 0 real_cost = -136.401 SAM_T06_server_TS4-scwrl costs 0 real_cost = -94.6071 SAM_T06_server_TS4 costs 0 real_cost = -119.682 SAM_T06_server_TS3-scwrl costs 0 real_cost = -131.206 SAM_T06_server_TS3 costs 0 real_cost = -138.057 SAM_T06_server_TS2-scwrl costs 0 real_cost = -143.828 SAM_T06_server_TS2 costs 0 real_cost = -160.41 SAM_T06_server_TS1-scwrl costs 0 real_cost = -202.252 SAM_T06_server_TS1 costs 0 real_cost = -198.809 SAM-T99_AL5-scwrl costs 0 real_cost = -128.703 SAM-T99_AL5 costs 0 real_cost = -99.603 SAM-T99_AL4-scwrl costs 0 real_cost = -35.2555 SAM-T99_AL4 costs 0 real_cost = -21.2183 SAM-T99_AL3-scwrl costs 0 real_cost = -83.1369 SAM-T99_AL3 costs 0 real_cost = -39.1967 SAM-T99_AL2-scwrl costs 0 real_cost = -170.776 SAM-T99_AL2 costs 0 real_cost = -125.861 SAM-T99_AL1-scwrl costs 0 real_cost = -163.309 SAM-T99_AL1 costs 0 real_cost = -119.877 SAM-T02_AL5-scwrl costs 0 real_cost = -81.1683 SAM-T02_AL5 costs 0 real_cost = -33.4274 SAM-T02_AL4-scwrl costs 0 real_cost = -160.667 SAM-T02_AL4 costs 0 real_cost = -108.684 SAM-T02_AL3-scwrl costs 0 real_cost = -159.373 SAM-T02_AL3 costs 0 real_cost = -115.712 SAM-T02_AL2-scwrl costs 0 real_cost = -188.882 SAM-T02_AL2 costs 0 real_cost = -143.909 SAM-T02_AL1-scwrl costs 0 real_cost = -13.2445 SAM-T02_AL1 costs 0 real_cost = 31.8455 ROKKY_TS5-scwrl costs 0 real_cost = -133.017 ROKKY_TS5 costs 0 real_cost = -129.299 ROKKY_TS4-scwrl costs 0 real_cost = -16.7967 ROKKY_TS4 costs 0 real_cost = -3.42514 ROKKY_TS3-scwrl costs 0 real_cost = -98.1947 ROKKY_TS3 costs 0 real_cost = -70.6134 ROKKY_TS2-scwrl costs 0 real_cost = -42.6274 ROKKY_TS2 costs 0 real_cost = -40.9658 ROKKY_TS1-scwrl costs 0 real_cost = -171.663 ROKKY_TS1 costs 0 real_cost = -166.509 ROBETTA_TS5-scwrl costs 0 real_cost = -170.576 ROBETTA_TS5 costs 0 real_cost = -162.116 ROBETTA_TS4-scwrl costs 0 real_cost = -177.227 ROBETTA_TS4 costs 0 real_cost = -171.938 ROBETTA_TS3-scwrl costs 0 real_cost = -148.538 ROBETTA_TS3 costs 0 real_cost = -141.894 ROBETTA_TS2-scwrl costs 0 real_cost = -150.242 ROBETTA_TS2 costs 0 real_cost = -146.299 ROBETTA_TS1-scwrl costs 0 real_cost = -156.087 ROBETTA_TS1 costs 0 real_cost = -155.59 RAPTOR_TS5-scwrl costs 0 real_cost = -179.717 RAPTOR_TS5 costs 0 real_cost = -189.829 RAPTOR_TS4-scwrl costs 0 real_cost = -179.717 RAPTOR_TS4 costs 0 real_cost = -189.829 RAPTOR_TS3-scwrl costs 0 real_cost = -209.174 RAPTOR_TS3 costs 0 real_cost = -208.787 RAPTOR_TS2-scwrl costs 0 real_cost = -209.174 RAPTOR_TS2 costs 0 real_cost = -208.787 RAPTOR_TS1-scwrl costs 0 real_cost = -226.188 RAPTOR_TS1 costs 0 real_cost = -232.528 RAPTORESS_TS5-scwrl costs 0 real_cost = -162.839 RAPTORESS_TS5 costs 0 real_cost = -148.587 RAPTORESS_TS4-scwrl costs 0 real_cost = -162.839 RAPTORESS_TS4 costs 0 real_cost = -148.587 RAPTORESS_TS3-scwrl costs 0 real_cost = -180.08 RAPTORESS_TS3 costs 0 real_cost = -165.51 RAPTORESS_TS2-scwrl costs 0 real_cost = -180.08 RAPTORESS_TS2 costs 0 real_cost = -165.51 RAPTORESS_TS1-scwrl costs 0 real_cost = -188.664 RAPTORESS_TS1 costs 0 real_cost = -185.733 RAPTOR-ACE_TS5-scwrl costs 0 real_cost = -156.557 RAPTOR-ACE_TS5 costs 0 real_cost = -151.538 RAPTOR-ACE_TS4-scwrl costs 0 real_cost = -171.112 RAPTOR-ACE_TS4 costs 0 real_cost = -169.448 RAPTOR-ACE_TS3-scwrl costs 0 real_cost = -169.163 RAPTOR-ACE_TS3 costs 0 real_cost = -164.506 RAPTOR-ACE_TS2-scwrl costs 0 real_cost = -156.557 RAPTOR-ACE_TS2 costs 0 real_cost = -151.538 RAPTOR-ACE_TS1-scwrl costs 0 real_cost = -203.78 RAPTOR-ACE_TS1 costs 0 real_cost = -204.374 Pmodeller6_TS5-scwrl costs 0 real_cost = -225.112 Pmodeller6_TS5 costs 0 real_cost = -223.236 Pmodeller6_TS4-scwrl costs 0 real_cost = -115.138 Pmodeller6_TS4 costs 0 real_cost = -114.806 Pmodeller6_TS3-scwrl costs 0 real_cost = -170.576 Pmodeller6_TS3 costs 0 real_cost = -162.116 Pmodeller6_TS2-scwrl costs 0 real_cost = -156.087 Pmodeller6_TS2 costs 0 real_cost = -155.59 Pmodeller6_TS1-scwrl costs 0 real_cost = -148.538 Pmodeller6_TS1 costs 0 real_cost = -141.894 Phyre-2_TS5-scwrl costs 0 real_cost = -177.087 Phyre-2_TS5 costs 0 real_cost = -167.459 Phyre-2_TS4-scwrl costs 0 real_cost = -177.087 Phyre-2_TS4 costs 0 real_cost = -167.459 Phyre-2_TS3-scwrl costs 0 real_cost = -177.087 Phyre-2_TS3 costs 0 real_cost = -167.459 Phyre-2_TS2-scwrl costs 0 real_cost = -177.087 Phyre-2_TS2 costs 0 real_cost = -167.459 Phyre-2_TS1-scwrl costs 0 real_cost = -177.103 Phyre-2_TS1 costs 0 real_cost = -167.478 Phyre-1_TS1-scwrl costs 0 real_cost = -75.6409 Phyre-1_TS1 costs 0 real_cost = -76.5748 Pcons6_TS5-scwrl costs 0 real_cost = -160.549 Pcons6_TS5 costs 0 real_cost = -158.265 Pcons6_TS4-scwrl costs 0 real_cost = -200.493 Pcons6_TS4 costs 0 real_cost = -203.99 Pcons6_TS3-scwrl costs 0 real_cost = -216.175 Pcons6_TS3 costs 0 real_cost = -208.617 Pcons6_TS2-scwrl costs 0 real_cost = -153.319 Pcons6_TS2 costs 0 real_cost = -153.384 Pcons6_TS1-scwrl costs 0 real_cost = -157.178 Pcons6_TS1 costs 0 real_cost = -156.128 PROTINFO_TS5-scwrl costs 0 real_cost = -179.727 PROTINFO_TS5 costs 0 real_cost = -166.4 PROTINFO_TS4-scwrl costs 0 real_cost = -171.723 PROTINFO_TS4 costs 0 real_cost = -162.508 PROTINFO_TS3-scwrl costs 0 real_cost = -128.292 PROTINFO_TS3 costs 0 real_cost = -122.689 PROTINFO_TS2-scwrl costs 0 real_cost = -217.256 PROTINFO_TS2 costs 0 real_cost = -216.597 PROTINFO_TS1-scwrl costs 0 real_cost = -169.594 PROTINFO_TS1 costs 0 real_cost = -166.315 PROTINFO-AB_TS5-scwrl costs 0 real_cost = -164.041 PROTINFO-AB_TS5 costs 0 real_cost = -144.823 PROTINFO-AB_TS4-scwrl costs 0 real_cost = -158.821 PROTINFO-AB_TS4 costs 0 real_cost = -141.246 PROTINFO-AB_TS3-scwrl costs 0 real_cost = -147.883 PROTINFO-AB_TS3 costs 0 real_cost = -138.381 PROTINFO-AB_TS2-scwrl costs 0 real_cost = -156.164 PROTINFO-AB_TS2 costs 0 real_cost = -139.927 PROTINFO-AB_TS1-scwrl costs 0 real_cost = -168.784 PROTINFO-AB_TS1 costs 0 real_cost = -156.317 NN_PUT_lab_TS1-scwrl costs 0 real_cost = -127.841 NN_PUT_lab_TS1 costs 0 real_cost = -132.737 MetaTasser_TS3-scwrl costs 0 real_cost = -150.34 MetaTasser_TS3 costs 0 real_cost = -144.726 MetaTasser_TS2-scwrl costs 0 real_cost = -157.87 MetaTasser_TS2 costs 0 real_cost = -151.444 MetaTasser_TS1-scwrl costs 0 real_cost = -150.238 MetaTasser_TS1 costs 0 real_cost = -146.385 Ma-OPUS-server_TS5-scwrl costs 0 real_cost = -147.489 Ma-OPUS-server_TS5 costs 0 real_cost = -148.641 Ma-OPUS-server_TS4-scwrl costs 0 real_cost = -144.7 Ma-OPUS-server_TS4 costs 0 real_cost = -144.399 Ma-OPUS-server_TS3-scwrl costs 0 real_cost = -152.267 Ma-OPUS-server_TS3 costs 0 real_cost = -151.051 Ma-OPUS-server_TS2-scwrl costs 0 real_cost = -76.8628 Ma-OPUS-server_TS2 costs 0 real_cost = -76.6334 Ma-OPUS-server_TS1-scwrl costs 0 real_cost = -83.3704 Ma-OPUS-server_TS1 costs 0 real_cost = -78.3922 Ma-OPUS-server2_TS5-scwrl costs 0 real_cost = -160.077 Ma-OPUS-server2_TS5 costs 0 real_cost = -156.674 Ma-OPUS-server2_TS4-scwrl costs 0 real_cost = -118.282 Ma-OPUS-server2_TS4 costs 0 real_cost = -105.289 Ma-OPUS-server2_TS3-scwrl costs 0 real_cost = -147.41 Ma-OPUS-server2_TS3 costs 0 real_cost = -127.611 Ma-OPUS-server2_TS2-scwrl costs 0 real_cost = -83.3704 Ma-OPUS-server2_TS2 costs 0 real_cost = -78.3922 Ma-OPUS-server2_TS1-scwrl costs 0 real_cost = -83.3704 Ma-OPUS-server2_TS1 costs 0 real_cost = -78.3922 MIG_FROST_AL1-scwrl costs 0 real_cost = 198.174 MIG_FROST_AL1 costs 0 real_cost = 246.312 LOOPP_TS5-scwrl costs 0 real_cost = -104.017 LOOPP_TS5 costs 0 real_cost = -81.4209 LOOPP_TS4-scwrl costs 0 real_cost = -162.162 LOOPP_TS4 costs 0 real_cost = -135.977 LOOPP_TS3-scwrl costs 0 real_cost = -191.793 LOOPP_TS3 costs 0 real_cost = -184.307 LOOPP_TS2-scwrl costs 0 real_cost = -94.0681 LOOPP_TS2 costs 0 real_cost = -83.8713 LOOPP_TS1-scwrl costs 0 real_cost = -127.841 LOOPP_TS1 costs 0 real_cost = -132.737 Huber-Torda-Server_TS5-scwrl costs 0 real_cost = -152.305 Huber-Torda-Server_TS5 costs 0 real_cost = -111.301 Huber-Torda-Server_TS4-scwrl costs 0 real_cost = -153.095 Huber-Torda-Server_TS4 costs 0 real_cost = -101.284 Huber-Torda-Server_TS3-scwrl costs 0 real_cost = -152.914 Huber-Torda-Server_TS3 costs 0 real_cost = -109.28 Huber-Torda-Server_TS1-scwrl costs 0 real_cost = -155.327 Huber-Torda-Server_TS1 costs 0 real_cost = -108.933 HHpred3_TS1-scwrl costs 0 real_cost = -165.776 HHpred3_TS1 costs 0 real_cost = -167.115 HHpred2_TS1-scwrl costs 0 real_cost = -180.596 HHpred2_TS1 costs 0 real_cost = -177.062 HHpred1_TS1-scwrl costs 0 real_cost = -190.647 HHpred1_TS1 costs 0 real_cost = -183.594 GeneSilicoMetaServer_TS5-scwrl costs 0 real_cost = -149.046 GeneSilicoMetaServer_TS5 costs 0 real_cost = -133.759 GeneSilicoMetaServer_TS4-scwrl costs 0 real_cost = -160.489 GeneSilicoMetaServer_TS4 costs 0 real_cost = -154.026 GeneSilicoMetaServer_TS3-scwrl costs 0 real_cost = -192.74 GeneSilicoMetaServer_TS3 costs 0 real_cost = -187.635 GeneSilicoMetaServer_TS2-scwrl costs 0 real_cost = -160.402 GeneSilicoMetaServer_TS2 costs 0 real_cost = -160.094 GeneSilicoMetaServer_TS1-scwrl costs 0 real_cost = -182.16 GeneSilicoMetaServer_TS1 costs 0 real_cost = -181.783 Frankenstein_TS5-scwrl costs 0 real_cost = 28.8307 Frankenstein_TS5 costs 0 real_cost = 32.0096 Frankenstein_TS4-scwrl costs 0 real_cost = -101.215 Frankenstein_TS4 costs 0 real_cost = -98.2753 Frankenstein_TS3-scwrl costs 0 real_cost = -168.234 Frankenstein_TS3 costs 0 real_cost = -159.895 Frankenstein_TS2-scwrl costs 0 real_cost = -141.811 Frankenstein_TS2 costs 0 real_cost = -130.032 Frankenstein_TS1-scwrl costs 0 real_cost = -160.799 Frankenstein_TS1 costs 0 real_cost = -159.799 FUNCTION_TS5-scwrl costs 0 real_cost = -80.5276 FUNCTION_TS5 costs 0 real_cost = -65.2826 FUNCTION_TS4-scwrl costs 0 real_cost = -165.688 FUNCTION_TS4 costs 0 real_cost = -160.155 FUNCTION_TS3-scwrl costs 0 real_cost = -72.3554 FUNCTION_TS3 costs 0 real_cost = -83.3479 FUNCTION_TS2-scwrl costs 0 real_cost = -159.161 FUNCTION_TS2 costs 0 real_cost = -151.636 FUNCTION_TS1-scwrl costs 0 real_cost = -158.849 FUNCTION_TS1 costs 0 real_cost = -157.595 FUGUE_AL5-scwrl costs 0 real_cost = 95.949 FUGUE_AL5 costs 0 real_cost = 130.091 FUGUE_AL4-scwrl costs 0 real_cost = -41.7489 FUGUE_AL4 costs 0 real_cost = 2.91917 FUGUE_AL3-scwrl costs 0 real_cost = -137.63 FUGUE_AL3 costs 0 real_cost = -111.381 FUGUE_AL2-scwrl costs 0 real_cost = -135.353 FUGUE_AL2 costs 0 real_cost = -91.2162 FUGUE_AL1-scwrl costs 0 real_cost = -154.711 FUGUE_AL1 costs 0 real_cost = -90.7692 FUGMOD_TS5-scwrl costs 0 real_cost = 47.334 FUGMOD_TS5 costs 0 real_cost = 54.391 FUGMOD_TS4-scwrl costs 0 real_cost = -75.1875 FUGMOD_TS4 costs 0 real_cost = -69.3416 FUGMOD_TS3-scwrl costs 0 real_cost = -164.172 FUGMOD_TS3 costs 0 real_cost = -154.794 FUGMOD_TS2-scwrl costs 0 real_cost = -176.026 FUGMOD_TS2 costs 0 real_cost = -171.718 FUGMOD_TS1-scwrl costs 0 real_cost = -163.469 FUGMOD_TS1 costs 0 real_cost = -162.048 FPSOLVER-SERVER_TS5-scwrl costs 0 real_cost = 324.518 FPSOLVER-SERVER_TS5 costs 0 real_cost = 325.257 FPSOLVER-SERVER_TS4-scwrl costs 0 real_cost = 323.63 FPSOLVER-SERVER_TS4 costs 0 real_cost = 323.546 FPSOLVER-SERVER_TS3-scwrl costs 0 real_cost = 315.834 FPSOLVER-SERVER_TS3 costs 0 real_cost = 320.912 FPSOLVER-SERVER_TS2-scwrl costs 0 real_cost = 304.614 FPSOLVER-SERVER_TS2 costs 0 real_cost = 304.852 FPSOLVER-SERVER_TS1-scwrl costs 0 real_cost = 317.099 FPSOLVER-SERVER_TS1 costs 0 real_cost = 320.727 FORTE2_AL5-scwrl costs 0 real_cost = 5.28026 FORTE2_AL5 costs 0 real_cost = 41.8924 FORTE2_AL4-scwrl costs 0 real_cost = -86.3812 FORTE2_AL4 costs 0 real_cost = -48.7939 FORTE2_AL3-scwrl costs 0 real_cost = -154.376 FORTE2_AL3 costs 0 real_cost = -92.9538 FORTE2_AL2-scwrl costs 0 real_cost = -194.877 FORTE2_AL2 costs 0 real_cost = -146.814 FORTE2_AL1-scwrl costs 0 real_cost = -92.0746 FORTE2_AL1 costs 0 real_cost = -44.6189 FORTE1_AL5-scwrl costs 0 real_cost = 5.28026 FORTE1_AL5 costs 0 real_cost = 41.8924 FORTE1_AL4-scwrl costs 0 real_cost = 6.76901 FORTE1_AL4 costs 0 real_cost = 45.4012 FORTE1_AL3-scwrl costs 0 real_cost = -84.0508 FORTE1_AL3 costs 0 real_cost = -46.6158 FORTE1_AL2-scwrl costs 0 real_cost = -195.638 FORTE1_AL2 costs 0 real_cost = -148.692 FORTE1_AL1-scwrl costs 0 real_cost = -92.0746 FORTE1_AL1 costs 0 real_cost = -44.6189 FOLDpro_TS5-scwrl costs 0 real_cost = -156.464 FOLDpro_TS5 costs 0 real_cost = -161.294 FOLDpro_TS4-scwrl costs 0 real_cost = -189.071 FOLDpro_TS4 costs 0 real_cost = -182.613 FOLDpro_TS3-scwrl costs 0 real_cost = -173.052 FOLDpro_TS3 costs 0 real_cost = -165.121 FOLDpro_TS2-scwrl costs 0 real_cost = -170.313 FOLDpro_TS2 costs 0 real_cost = -170.779 FOLDpro_TS1-scwrl costs 0 real_cost = -183.842 FOLDpro_TS1 costs 0 real_cost = -185.291 FAMS_TS5-scwrl costs 0 real_cost = -102.87 FAMS_TS5 costs 0 real_cost = -86.276 FAMS_TS4-scwrl costs 0 real_cost = -91.3032 FAMS_TS4 costs 0 real_cost = -80.3174 FAMS_TS3-scwrl costs 0 real_cost = -89.2892 FAMS_TS3 costs 0 real_cost = -86.0015 FAMS_TS2-scwrl costs 0 real_cost = -92.2417 FAMS_TS2 costs 0 real_cost = -68.6986 FAMS_TS1-scwrl costs 0 real_cost = -187.575 FAMS_TS1 costs 0 real_cost = -184.677 FAMSD_TS5-scwrl costs 0 real_cost = -110.781 FAMSD_TS5 costs 0 real_cost = -111.669 FAMSD_TS4-scwrl costs 0 real_cost = -130.627 FAMSD_TS4 costs 0 real_cost = -127.273 FAMSD_TS3-scwrl costs 0 real_cost = -130.564 FAMSD_TS3 costs 0 real_cost = -142.644 FAMSD_TS2-scwrl costs 0 real_cost = -89.2892 FAMSD_TS2 costs 0 real_cost = -86.0015 FAMSD_TS1-scwrl costs 0 real_cost = -84.0332 FAMSD_TS1 costs 0 real_cost = -58.6725 Distill_TS5-scwrl costs 0 real_cost = 137.432 Distill_TS4-scwrl costs 0 real_cost = 141.378 Distill_TS3-scwrl costs 0 real_cost = 123.708 Distill_TS2-scwrl costs 0 real_cost = 126.065 Distill_TS1-scwrl costs 0 real_cost = 139.114 CaspIta-FOX_TS5-scwrl costs 0 real_cost = 1.6915 CaspIta-FOX_TS5 costs 0 real_cost = 5.91884 CaspIta-FOX_TS4-scwrl costs 0 real_cost = -163.772 CaspIta-FOX_TS4 costs 0 real_cost = -157.815 CaspIta-FOX_TS3-scwrl costs 0 real_cost = -118.032 CaspIta-FOX_TS3 costs 0 real_cost = -124.427 CaspIta-FOX_TS2-scwrl costs 0 real_cost = -201.514 CaspIta-FOX_TS2 costs 0 real_cost = -202.828 CaspIta-FOX_TS1-scwrl costs 0 real_cost = -101.115 CaspIta-FOX_TS1 costs 0 real_cost = -93.9884 CPHmodels_TS1-scwrl costs 0 real_cost = -67.2375 CPHmodels_TS1 costs 0 real_cost = -53.021 CIRCLE_TS5-scwrl costs 0 real_cost = -137.667 CIRCLE_TS5 costs 0 real_cost = -128.826 CIRCLE_TS4-scwrl costs 0 real_cost = -102.87 CIRCLE_TS4 costs 0 real_cost = -86.276 CIRCLE_TS3-scwrl costs 0 real_cost = -133.807 CIRCLE_TS3 costs 0 real_cost = -114.748 CIRCLE_TS2-scwrl costs 0 real_cost = -92.2417 CIRCLE_TS2 costs 0 real_cost = -68.6986 CIRCLE_TS1-scwrl costs 0 real_cost = -91.3032 CIRCLE_TS1 costs 0 real_cost = -80.3174 Bilab-ENABLE_TS5-scwrl costs 0 real_cost = -98.6239 Bilab-ENABLE_TS5 costs 0 real_cost = -98.463 Bilab-ENABLE_TS4-scwrl costs 0 real_cost = -169.223 Bilab-ENABLE_TS4 costs 0 real_cost = -171.064 Bilab-ENABLE_TS3-scwrl costs 0 real_cost = -154.673 Bilab-ENABLE_TS3 costs 0 real_cost = -153.727 Bilab-ENABLE_TS2-scwrl costs 0 real_cost = -170.939 Bilab-ENABLE_TS2 costs 0 real_cost = -170.994 Bilab-ENABLE_TS1-scwrl costs 0 real_cost = -141.656 Bilab-ENABLE_TS1 costs 0 real_cost = -141.615 BayesHH_TS1-scwrl costs 0 real_cost = -174.078 BayesHH_TS1 costs 0 real_cost = -155.055 ABIpro_TS5-scwrl costs 0 real_cost = 202.784 ABIpro_TS5 costs 0 real_cost = 201.788 ABIpro_TS4-scwrl costs 0 real_cost = 256.421 ABIpro_TS4 costs 0 real_cost = 254.218 ABIpro_TS3-scwrl costs 0 real_cost = 194.805 ABIpro_TS3 costs 0 real_cost = 195.394 ABIpro_TS2-scwrl costs 0 real_cost = 186.296 ABIpro_TS2 costs 0 real_cost = 186.296 ABIpro_TS1-scwrl costs 0 real_cost = 232.656 ABIpro_TS1 costs 0 real_cost = 233.095 3Dpro_TS5-scwrl costs 0 real_cost = -173.052 3Dpro_TS5 costs 0 real_cost = -165.121 3Dpro_TS4-scwrl costs 0 real_cost = -170.313 3Dpro_TS4 costs 0 real_cost = -170.779 3Dpro_TS3-scwrl costs 0 real_cost = -156.464 3Dpro_TS3 costs 0 real_cost = -161.294 3Dpro_TS2-scwrl costs 0 real_cost = -189.071 3Dpro_TS2 costs 0 real_cost = -182.613 3Dpro_TS1-scwrl costs 0 real_cost = -189.014 3Dpro_TS1 costs 0 real_cost = -184.581 3D-JIGSAW_TS5-scwrl costs 0 real_cost = -80.8078 3D-JIGSAW_TS5 costs 0 real_cost = -83.629 3D-JIGSAW_TS4-scwrl costs 0 real_cost = -86.1366 3D-JIGSAW_TS4 costs 0 real_cost = -86.509 3D-JIGSAW_TS3-scwrl costs 0 real_cost = -166.264 3D-JIGSAW_TS3 costs 0 real_cost = -149.342 3D-JIGSAW_TS2-scwrl costs 0 real_cost = -109.627 3D-JIGSAW_TS2 costs 0 real_cost = -104.867 3D-JIGSAW_TS1-scwrl costs 0 real_cost = -146.119 3D-JIGSAW_TS1 costs 0 real_cost = -136.93 3D-JIGSAW_RECOM_TS5-scwrl costs 0 real_cost = -128.921 3D-JIGSAW_RECOM_TS5 costs 0 real_cost = -129.921 3D-JIGSAW_RECOM_TS4-scwrl costs 0 real_cost = -157.24 3D-JIGSAW_RECOM_TS4 costs 0 real_cost = -148.159 3D-JIGSAW_RECOM_TS3-scwrl costs 0 real_cost = -112.569 3D-JIGSAW_RECOM_TS3 costs 0 real_cost = -120.382 3D-JIGSAW_RECOM_TS2-scwrl costs 0 real_cost = -123.336 3D-JIGSAW_RECOM_TS2 costs 0 real_cost = -119.542 3D-JIGSAW_RECOM_TS1-scwrl costs 0 real_cost = -132.172 3D-JIGSAW_RECOM_TS1 costs 0 real_cost = -129.975 3D-JIGSAW_POPULUS_TS5-scwrl costs 0 real_cost = -61.1193 3D-JIGSAW_POPULUS_TS5 costs 0 real_cost = -59.7186 3D-JIGSAW_POPULUS_TS4-scwrl costs 0 real_cost = -115.122 3D-JIGSAW_POPULUS_TS4 costs 0 real_cost = -124.753 3D-JIGSAW_POPULUS_TS3-scwrl costs 0 real_cost = -119.584 3D-JIGSAW_POPULUS_TS3 costs 0 real_cost = -126.711 3D-JIGSAW_POPULUS_TS2-scwrl costs 0 real_cost = -162.64 3D-JIGSAW_POPULUS_TS2 costs 0 real_cost = -168.456 3D-JIGSAW_POPULUS_TS1-scwrl costs 0 real_cost = -120.07 3D-JIGSAW_POPULUS_TS1 costs 0 real_cost = -129.713 T0359.try9-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -181.313 T0359.try9-opt2.pdb.gz costs 0 real_cost = -175.89 T0359.try9-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = -176.53 T0359.try9-opt2.gromacs0.pdb.gz costs 0 real_cost = -171.689 T0359.try9-opt1.pdb.gz costs 0 real_cost = -176.163 T0359.try9-opt1-scwrl.pdb.gz costs 0 real_cost = -180.636 T0359.try8-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -187.23 T0359.try8-opt2.pdb.gz costs 0 real_cost = -181.38 T0359.try8-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = -177.14 T0359.try8-opt2.gromacs0.pdb.gz costs 0 real_cost = -181.257 T0359.try8-opt1.pdb.gz costs 0 real_cost = -190.828 T0359.try8-opt1-scwrl.pdb.gz costs 0 real_cost = -192.158 T0359.try7-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -179.088 T0359.try7-opt2.pdb.gz costs 0 real_cost = -179.594 T0359.try7-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = -175.557 T0359.try7-opt2.gromacs0.pdb.gz costs 0 real_cost = -178.155 T0359.try7-opt1.pdb.gz costs 0 real_cost = -179.331 T0359.try7-opt1-scwrl.pdb.gz costs 0 real_cost = -187.337 T0359.try6-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -198.849 T0359.try6-opt2.pdb.gz costs 0 real_cost = -194.134 T0359.try6-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = -203.431 T0359.try6-opt2.gromacs0.pdb.gz costs 0 real_cost = -197.135 T0359.try6-opt1.pdb.gz costs 0 real_cost = -205.865 T0359.try6-opt1-scwrl.pdb.gz costs 0 real_cost = -205.837 T0359.try5-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -218.117 T0359.try5-opt2.pdb.gz costs 0 real_cost = -210.108 T0359.try5-opt2.gromacs1.repack-nonPC.pdb.gz costs 0 real_cost = -180.428 T0359.try5-opt2.gromacs1.pdb.gz costs 0 real_cost = -158.237 T0359.try5-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = -215.888 T0359.try5-opt2.gromacs0.pdb.gz costs 0 real_cost = -208.805 T0359.try5-opt1.pdb.gz costs 0 real_cost = -211.577 T0359.try5-opt1-scwrl.pdb.gz costs 0 real_cost = -217.013 T0359.try4-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -214.372 T0359.try4-opt2.pdb.gz costs 0 real_cost = -207.982 T0359.try4-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = -212.72 T0359.try4-opt2.gromacs0.pdb.gz costs 0 real_cost = -205.518 T0359.try4-opt1.pdb.gz costs 0 real_cost = -208.572 T0359.try4-opt1-scwrl.pdb.gz costs 0 real_cost = -214.376 T0359.try3-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -215.205 T0359.try3-opt2.pdb.gz costs 0 real_cost = -210.095 T0359.try3-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = -213.417 T0359.try3-opt2.gromacs0.pdb.gz costs 0 real_cost = -207.988 T0359.try3-opt1.pdb.gz costs 0 real_cost = -211.916 T0359.try3-opt1-scwrl.pdb.gz costs 0 real_cost = -221.093 T0359.try2-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -215.854 T0359.try2-opt2.pdb.gz costs 0 real_cost = -211.949 T0359.try2-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = -214.275 T0359.try2-opt2.gromacs0.pdb.gz costs 0 real_cost = -210.611 T0359.try2-opt1.pdb.gz costs 0 real_cost = -218.352 T0359.try2-opt1-scwrl.pdb.gz costs 0 real_cost = -223.098 T0359.try1-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -218.203 T0359.try1-opt2.pdb.gz costs 0 real_cost = -218.557 T0359.try1-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = -215.817 T0359.try1-opt2.gromacs0.pdb.gz costs 0 real_cost = -217.982 T0359.try1-opt1.pdb.gz costs 0 real_cost = -224.546 T0359.try1-opt1-scwrl.pdb.gz costs 0 real_cost = -226.62 ../model5.ts-submitted costs 0 real_cost = -170.697 ../model4.ts-submitted costs 0 real_cost = -211.938 ../model3.ts-submitted costs 0 real_cost = -176.522 ../model2.ts-submitted costs 0 real_cost = -177.096 ../model1.ts-submitted costs 0 real_cost = -209.991 align5 costs 0 real_cost = -150.358 align4 costs 0 real_cost = -145.644 align3 costs 0 real_cost = -142.891 align2 costs 0 real_cost = -127.942 align1 costs 0 real_cost = -179.354 T0359.try1-opt2.pdb costs 0 real_cost = -218.539 model5-scwrl costs 0 real_cost = -153.802 model5.ts-submitted costs 0 real_cost = -170.697 model4-scwrl costs 0 real_cost = -221.113 model4.ts-submitted costs 0 real_cost = -211.938 model3-scwrl costs 0 real_cost = -178.682 model3.ts-submitted costs 0 real_cost = -176.522 model2-scwrl costs 0 real_cost = -184.758 model2.ts-submitted costs 0 real_cost = -177.096 model1-scwrl costs 0 real_cost = -216.312 model1.ts-submitted costs 0 real_cost = -209.991 2iwnA costs 0 real_cost = -886.2 # command:CPU_time= 206.705 sec, elapsed time= 261.388 sec) # command:rm -f sort.tmp /projects/compbio/bin/sorttbl real_cost < decoys/evaluate.rdb > sort.tmp mv -f sort.tmp decoys/evaluate.rdb mv -f decoys/evaluate.pretty decoys/evaluate.pretty.old /projects/compbio/experiments/protein-predict/casp7/scripts/prettyscore -terse -targpfx -decpoint < decoys/evaluate.rdb > decoys/evaluate.pretty