# TARGET T0359 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-ebghtl-stride-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0359.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 1676 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 S 0.035 0.007 0.014 0.005 0.295 0.644 2 M 0.068 0.013 0.029 0.003 0.325 0.563 3 S 0.117 0.007 0.025 0.001 0.336 0.514 4 E 0.315 0.016 0.018 0.001 0.243 0.408 5 T 0.621 0.008 0.003 0.001 0.069 0.299 6 F 0.868 0.002 0.001 0.001 0.026 0.103 7 D 0.982 0.001 0.001 0.001 0.004 0.014 8 V 0.994 0.001 0.001 0.001 0.001 0.004 9 E 0.994 0.001 0.001 0.001 0.001 0.004 10 L 0.985 0.001 0.001 0.001 0.003 0.012 11 T 0.949 0.001 0.001 0.001 0.014 0.036 12 K 0.820 0.010 0.001 0.001 0.050 0.118 13 N 0.335 0.026 0.005 0.001 0.496 0.137 14 V 0.061 0.008 0.044 0.002 0.797 0.087 15 Q 0.040 0.003 0.084 0.002 0.782 0.090 16 G 0.100 0.008 0.065 0.001 0.736 0.090 17 L 0.195 0.008 0.013 0.001 0.363 0.420 18 G 0.598 0.013 0.004 0.001 0.090 0.295 19 I 0.934 0.005 0.001 0.001 0.014 0.046 20 T 0.976 0.002 0.001 0.001 0.005 0.017 21 I 0.970 0.002 0.001 0.001 0.006 0.022 22 A 0.867 0.003 0.001 0.001 0.034 0.095 23 G 0.669 0.005 0.004 0.001 0.094 0.228 24 Y 0.470 0.016 0.005 0.001 0.216 0.291 25 I 0.385 0.078 0.008 0.004 0.194 0.332 26 G 0.184 0.022 0.013 0.005 0.480 0.295 27 D 0.048 0.007 0.160 0.027 0.644 0.114 28 K 0.049 0.008 0.212 0.025 0.606 0.100 29 K 0.053 0.017 0.190 0.034 0.612 0.093 30 L 0.076 0.035 0.067 0.033 0.523 0.266 31 E 0.110 0.034 0.031 0.014 0.495 0.317 32 P 0.115 0.014 0.035 0.009 0.589 0.239 33 S 0.166 0.006 0.016 0.004 0.465 0.343 34 G 0.666 0.012 0.004 0.002 0.147 0.169 35 I 0.927 0.003 0.001 0.001 0.017 0.052 36 F 0.985 0.001 0.001 0.001 0.004 0.010 37 V 0.985 0.001 0.001 0.002 0.003 0.008 38 K 0.965 0.001 0.001 0.002 0.009 0.023 39 S 0.912 0.001 0.001 0.002 0.021 0.063 40 I 0.724 0.015 0.002 0.002 0.047 0.209 41 T 0.459 0.023 0.006 0.005 0.395 0.112 42 K 0.086 0.006 0.021 0.025 0.757 0.106 43 S 0.022 0.004 0.041 0.033 0.813 0.087 44 S 0.105 0.038 0.041 0.026 0.701 0.090 45 A 0.143 0.035 0.102 0.085 0.286 0.349 46 V 0.209 0.047 0.181 0.144 0.227 0.191 47 E 0.213 0.024 0.238 0.141 0.258 0.128 48 H 0.240 0.025 0.139 0.103 0.300 0.194 49 D 0.164 0.014 0.084 0.069 0.473 0.197 50 G 0.168 0.010 0.033 0.029 0.433 0.327 51 R 0.361 0.021 0.024 0.011 0.221 0.361 52 I 0.428 0.145 0.012 0.005 0.101 0.309 53 Q 0.256 0.036 0.018 0.006 0.644 0.039 54 I 0.126 0.007 0.007 0.004 0.820 0.037 55 G 0.034 0.002 0.006 0.002 0.923 0.033 56 D 0.560 0.015 0.002 0.001 0.383 0.038 57 Q 0.924 0.007 0.001 0.001 0.018 0.049 58 I 0.986 0.001 0.001 0.001 0.004 0.008 59 I 0.994 0.001 0.001 0.001 0.001 0.004 60 A 0.988 0.001 0.001 0.001 0.004 0.005 61 V 0.888 0.002 0.001 0.002 0.076 0.032 62 D 0.383 0.003 0.001 0.003 0.490 0.119 63 G 0.239 0.011 0.004 0.003 0.641 0.102 64 T 0.576 0.035 0.007 0.003 0.246 0.131 65 N 0.590 0.066 0.007 0.007 0.123 0.208 66 L 0.195 0.022 0.041 0.012 0.711 0.020 67 Q 0.080 0.004 0.022 0.007 0.849 0.038 68 G 0.012 0.001 0.029 0.011 0.905 0.041 69 F 0.073 0.083 0.005 0.012 0.677 0.150 70 T 0.048 0.029 0.001 0.028 0.039 0.856 71 N 0.001 0.001 0.003 0.987 0.002 0.006 72 Q 0.001 0.001 0.001 0.999 0.001 0.001 73 Q 0.001 0.001 0.001 0.999 0.001 0.001 74 A 0.001 0.001 0.001 0.999 0.001 0.001 75 V 0.001 0.001 0.001 0.999 0.001 0.001 76 E 0.001 0.001 0.001 0.999 0.001 0.001 77 V 0.001 0.001 0.001 0.996 0.002 0.001 78 L 0.001 0.001 0.003 0.990 0.005 0.001 79 R 0.001 0.001 0.008 0.979 0.011 0.001 80 H 0.001 0.001 0.008 0.935 0.030 0.024 81 T 0.003 0.006 0.014 0.541 0.116 0.321 82 G 0.005 0.003 0.003 0.003 0.182 0.804 83 Q 0.035 0.002 0.004 0.001 0.175 0.784 84 T 0.695 0.009 0.002 0.001 0.068 0.226 85 V 0.950 0.001 0.001 0.001 0.010 0.038 86 L 0.989 0.001 0.001 0.001 0.002 0.008 87 L 0.995 0.001 0.001 0.001 0.001 0.004 88 T 0.992 0.001 0.001 0.001 0.001 0.006 89 L 0.988 0.001 0.001 0.001 0.002 0.009 90 M 0.937 0.001 0.001 0.001 0.008 0.053 91 R 0.712 0.005 0.001 0.003 0.090 0.190 92 R 0.151 0.011 0.004 0.012 0.309 0.513 93 G 0.024 0.005 0.006 0.004 0.408 0.554 94 E 0.037 0.018 0.009 0.006 0.390 0.539 95 T 0.023 0.017 0.008 0.009 0.174 0.769 96 S 0.023 0.018 0.006 0.009 0.122 0.822 97 V 0.010 0.003 0.002 0.003 0.042 0.940