# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2fe5A 94 1.40e-14 2fneA 117 3.91e-14 1g9oA 91 7.39e-14 1pdr b.36.1.1 60400 2fcfA 103 9.36e-14 1tp5A 119 1.34e-13 1be9A 119 1.80e-13 1pdr b.36.1.1 24774 1qavA 90 3.36e-13 1qauA b.36.1.1 24777 1n7eA 97 2.98e-12 b.36.1.1 91691 2h2bA 107 3.07e-12 1ihjA 98 3.32e-12 1pdr b.36.1.1 62382 1n7fA 97 4.52e-12 b.36.1.1 91692 1l6oA 95 5.44e-12 b.36.1.1 84534 1q3oA 109 6.33e-12 b.36.1.1 95700 2f0aA 98 8.76e-12 1mfgA 95 3.90e-11 b.36.1.1 79043 2h3lA 103 4.15e-11 1nf3C 128 1.11e-10 b.36.1.1 85596 2f5yA 91 1.29e-10 1kwaA 88 1.48e-10 1kwaA b.36.1.1 24772 1wf7A 103 1.61e-10 1qauA 112 1.66e-10 1qauA b.36.1.1 24779 1v5lA 103 3.78e-10 b.36.1.1 108378 1nteA 82 1.07e-08 b.36.1.1 86163 1r6jA 82 1.07e-08 b.36.1.1 97151 1fc6A 388 1.11e-04 1fc6A b.36.1.3,c.14.1.2 64738,64739 1lcyA 325 1.17e-04 b.36.1.4,b.47.1.1 73834,73835 1te0A 318 2.85e-04 1sotA 320 7.57e-03 b.36.1.4,b.47.1.1 105852,105853 1y8tA 324 8.31e-03 1zn8A 180 5.07e-02 1fxlA 167 2.01e-01 1b7fA d.58.7.1,d.58.7.1 39183,39184 1qb7A 236 3.57e-01 1qb7A c.61.1.1 34087 1yg9A 330 2.56e+00 1xx6A 191 2.82e+00 1ad3A 452 2.90e+00 1ad3A c.82.1.1 35335 1fwkA 296 2.91e+00 1fwkA d.14.1.5,d.58.26.1 37576,39398 1o63A 219 2.92e+00 c.94.1.1 92540 1x3mA 415 3.14e+00 1cliA 345 3.33e+00 1cliA d.79.4.1,d.139.1.1 39816,41459 1h72C 296 3.34e+00 d.14.1.5,d.58.26.1 60712,60713 1fdr 248 3.63e+00 1fdr b.43.4.2,c.25.1.1 25653,31543 1q52A 314 4.64e+00 c.14.1.3 95846 1db3A 372 5.05e+00 1db3A c.2.1.2 29813 1bx4A 345 5.05e+00 1bx4A c.72.1.1 34935 1yjmA 110 5.26e+00 1lnzA 342 5.53e+00 b.117.1.1,c.37.1.8 78112,78113 2brfA 110 8.82e+00 1l1qA 186 9.48e+00 c.61.1.1 77653 1uh5A 329 9.98e+00 c.2.1.2 107840 2az4A 429 1.03e+01 1xwsA 313 1.05e+01 1vcaA 202 1.07e+01 1vcaA b.1.1.3,b.1.1.4 21649,21685 1o6dA 163 1.08e+01 c.116.1.3 92567 1g2qA 187 1.09e+01 c.61.1.1 65117 1se8A 301 1.13e+01 b.40.4.3 105448 1mkmA 249 1.21e+01 a.4.5.33,d.110.2.2 79242,79243 2gwnA 452 1.22e+01 1su4A 994 1.22e+01 b.82.7.1,c.108.1.7,d.220.1.1,f.33.1.1 98993,98994,98995,98996 1xv5A 401 1.26e+01 1opr 213 1.30e+01 1opr c.61.1.1 34091 1eulA 994 1.37e+01 1eulA 2agcA 162 1.38e+01 1a44 185 1.43e+01 1a44 b.17.1.1 23704 1lh0A 213 1.57e+01 c.61.1.1 73896 1h65A 270 1.62e+01 c.37.1.8 65640 1rypB 250 1.63e+01 1rypB d.153.1.4 41933 1un8A 552 1.79e+01 c.119.1.2,a.208.1.1 103806,99661 1evfA 264 1.89e+01 1bkpA d.117.1.1 40932 2g8oA 264 1.95e+01 1qqqA 264 1.95e+01 1bkpA d.117.1.1 40931 2g8mA 264 2.00e+01 2bikB 313 2.04e+01 2fvgA 340 2.04e+01 1r31A 428 2.04e+01 d.58.20.1,d.179.1.1 96897,96898 1w30A 201 2.09e+01 1uc2A 481 2.15e+01 d.261.1.1 99161 2bhoA 130 2.17e+01 1bu6O 501 2.24e+01 1glcG c.55.1.4,c.55.1.4 33499,33500 1cq3A 233 2.27e+01 1cq3A b.27.1.1 23923 1vpqA 273 2.46e+01 2d4pA 141 2.51e+01 1hvyA 288 2.57e+01 1bkpA d.117.1.1 41049 2bw3A 534 2.62e+01 1csh 435 2.74e+01 1csh a.103.1.1 18880 1jmuB 666 2.94e+01 1w78A 422 2.94e+01 2bsjA 133 2.95e+01 1n6aA 259 2.95e+01 b.76.2.1,b.85.7.1 80121,80122 2bshA 125 2.97e+01 1y0bA 197 3.00e+01 1eu1A 780 3.01e+01 1dmr b.52.2.2,c.81.1.1 26903,35311 1euwA 152 3.35e+01 1dupA b.85.4.1 28349 1vdmA 153 3.37e+01 1t6t1 118 3.39e+01 1vchA 175 3.45e+01 2fvtA 135 3.62e+01 2iu4A 336 3.75e+01 1u9yA 284 3.89e+01 1yqfA 203 3.99e+01 1dmgA 225 4.09e+01 1dmgA c.22.1.1 31036 1ujxA 119 4.11e+01 b.26.1.2 99473 2ghpA 292 4.16e+01 1xmrA 243 4.18e+01 1fr3A 67 4.24e+01 1fr3A b.40.6.1 25436 1fm0E 150 4.39e+01 1fmaE d.41.5.1 38629 1g57A 217 4.45e+01 1g57A d.115.1.2 60253 1vraB 215 4.46e+01 2f69A 261 4.49e+01 1f28A 297 4.53e+01 1bkpA d.117.1.1 59608 1ftkA 279 4.53e+01 1gr2A c.94.1.1 35819 2f4wA 187 4.60e+01 1y791 680 4.66e+01 1behA 187 4.76e+01 1a44 b.17.1.1 23700 2anuA 255 4.80e+01 2ptd 298 4.86e+01 2plc c.1.18.2 29605 1a8y 367 4.96e+01 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 2f9dA 125 4.97e+01 2bh8A 101 5.02e+01 1koe 172 5.11e+01 1koe d.169.1.5 42448 1ueoA 63 5.29e+01 j.107.1.1 99269 1w94A 156 5.37e+01 1j24A 143 5.43e+01 c.52.1.20 84008 2f9fA 177 5.44e+01 1rwzA 245 5.48e+01 d.131.1.2,d.131.1.2 98005,98006 1g8sA 230 5.48e+01 c.66.1.3 90507 1oroA 213 5.49e+01 1opr c.61.1.1 34093 1rypL 212 5.50e+01 d.153.1.4 41880 1p0zA 131 5.59e+01 d.110.6.1 93882 1ltlA 279 5.63e+01 b.40.4.11 84701 1cjbA 231 5.64e+01 1qk3A c.61.1.1 34079 1jalA 363 5.65e+01 c.37.1.8,d.15.10.2 84138,84139 1xs1A 193 5.68e+01 1zxxA 319 5.69e+01 1r62A 160 5.81e+01 d.122.1.3 104816 2bnjA 303 5.83e+01 2b8tA 223 5.89e+01 1h3gA 601 5.96e+01 b.1.18.2,b.71.1.1,c.1.8.1 90594,90595,90596 1fy7A 278 6.03e+01 1fy7A d.108.1.1 40817 2cwaA 263 6.04e+01 1e9xA 455 6.04e+01 1ea1A a.104.1.1 18969 1u13A 455 6.09e+01 a.104.1.1 107578 2adcA 229 6.10e+01 1fbnA 230 6.17e+01 1fbnA c.66.1.3 34181 2bw4A 340 6.23e+01 1enp 312 6.25e+01 1enp c.2.1.2 29906 1rpxA 230 6.25e+01 1rpxA c.1.2.2 28536 1b25A 619 6.26e+01 1b25A a.110.1.1,d.152.1.1 19044,41796 1sjqA 105 6.30e+01 d.58.7.1 105660 2bgiA 272 6.32e+01 1x8vA 455 6.33e+01 1ecfA 504 6.35e+01 1ecfB c.61.1.1,d.153.1.1 34053,41820 2hc1A 291 6.38e+01 1sw5A 275 6.40e+01 c.94.1.1 106069 1mo1A 87 6.52e+01 d.94.1.1 91363 1zkkA 167 6.53e+01 1h5zA 455 6.54e+01 a.104.1.1 90622 1d7oA 297 6.55e+01 1enp c.2.1.2 29907 1i6pA 220 6.58e+01 1ddzA c.53.2.1 61848 2affA 120 6.59e+01 2h03A 291 6.65e+01 1wnfA 328 6.68e+01 2cw8A 537 6.69e+01 1ti6A 875 6.78e+01 b.52.2.2,c.81.1.1 106974,106975 1dg6A 191 6.95e+01 1d4vB b.22.1.1 23883 1quqA 129 6.98e+01 1quqA b.40.4.3 25303 1wlsA 328 7.03e+01 1wpgA 994 7.07e+01 2bb3A 221 7.19e+01 1gpjA 404 7.24e+01 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1brt 277 7.26e+01 1brt c.69.1.12 34699 1q1rA 431 7.31e+01 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1vkmA 297 7.35e+01 c.138.1.1 108670 1kk1A 410 7.41e+01 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 1y7lA 316 7.43e+01 1htrB 329 7.44e+01 1smrA 1hw7A 255 7.51e+01 1i7fA d.193.1.1 61297 2aamA 309 7.56e+01 1mq7A 154 7.60e+01 b.85.4.1 79404 1fxkC 133 7.70e+01 1fxkC a.2.5.1 15702 1uthA 315 7.70e+01 c.94.1.1 108032 1yloA 348 7.75e+01 1xdnA 277 7.76e+01 1jpaA 312 7.82e+01 d.144.1.7 67011 1ef8A 261 7.85e+01 1ef8A c.14.1.3 30921 1a4yA 460 7.86e+01 1a4yA c.10.1.1 30852 1nif 340 7.93e+01 1nif b.6.1.3,b.6.1.3 23048,23049 1broA 277 7.97e+01 1brt c.69.1.12 34700 1z8gA 372 7.98e+01 1llnA 262 8.13e+01 d.165.1.1 84625 1ypvA 313 8.14e+01 1eceA 358 8.16e+01 1eceA c.1.8.3 28813 1owqA 361 8.16e+01 c.1.8.5,d.26.3.1 104041,104042 1v6fA 151 8.20e+01 d.109.1.2 108395 2fdiA 211 8.24e+01 1o7fA 469 8.28e+01 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 1xznA 179 8.32e+01 1p7tA 731 8.42e+01 c.1.13.1 94319 1wrvA 308 8.48e+01 1a8p 258 8.49e+01 1fdr b.43.4.2,c.25.1.1 25654,31544 1fjrA 195 8.50e+01 1fjrA b.102.1.1 59855 1rxxA 421 8.51e+01 d.126.1.4 98061 1rovA 857 8.61e+01 a.119.1.1,b.12.1.1 97674,97675 1vj0A 380 8.71e+01 b.35.1.2,c.2.1.1 100786,100787 1d4oA 184 8.78e+01 1d4oA c.31.1.4 31748 1uw0A 117 8.79e+01 g.39.1.12 108063 2fe7A 166 8.99e+01 2cq2A 114 9.00e+01