# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2f4qA 346 1.30e-01 1ffyA 917 3.76e-01 1qu2A a.27.1.1,b.51.1.1,c.26.1.1 16926,26891,31593 1lktA 104 4.04e-01 1lktA b.90.1.1 28398 1yaxA 153 5.74e-01 1qx4A 274 8.54e-01 b.43.4.2,c.25.1.1 104624,104625 1yx1A 264 1.26e+00 1tp6A 128 1.41e+00 d.17.4.12 107184 2c3vA 102 1.64e+00 1zkdA 387 2.75e+00 1cqyA 99 3.14e+00 1b9zA b.3.1.1 22527 1m93C 41 3.16e+00 1dcjA 81 3.18e+00 1dcjA d.68.3.3 59115 1umkA 275 3.49e+00 3ezmA 101 4.65e+00 3ezmA b.89.1.1 28395 1hw7A 255 5.95e+00 1i7fA d.193.1.1 61297 1dg9A 157 6.16e+00 1dg9A c.44.1.1 32637 2a2pA 129 6.17e+00 1xwwA 157 6.22e+00 2bjbA 462 6.50e+00 1ui0A 205 6.51e+00 c.18.1.2 99411 1cdq 77 6.68e+00 1cds g.7.1.3 44459 3nul 130 6.99e+00 3nul d.110.1.1 40891 1gsa 316 7.05e+00 1gsa c.30.1.3,d.142.1.1 31718,41477 1lwdA 413 7.09e+00 c.77.1.1 78265 1f00I 282 7.15e+00 1f00I b.1.14.1,b.1.14.1,d.169.1.3 22368,22369,42439 1ijqA 316 7.40e+00 1ijqA b.68.5.1,g.3.11.1 62506,62507 1szoA 257 7.41e+00 c.14.1.3 106164 1vetA 124 7.97e+00 d.110.7.1 108553 1tqzA 133 8.84e+00 1vjvA 415 1.05e+01 d.3.1.9 108632 1vr9A 213 1.07e+01 2cr5A 109 1.07e+01 1txkA 498 1.10e+01 b.1.18.2,b.30.5.9 107425,107426 1qhoA 686 1.11e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21844,22513,27751,28738 1qauA 112 1.12e+01 1qauA b.36.1.1 24779 1iwdA 215 1.19e+01 d.3.1.1 83756 1woyA 500 1.22e+01 1w41A 101 1.23e+01 1vemA 516 1.23e+01 1ne9A 335 1.26e+01 d.108.1.4,d.108.1.4 91839,91840 1kllA 130 1.28e+01 d.32.1.2 72720 1y8qB 640 1.28e+01 1vq2A 193 1.29e+01 1qmvA 197 1.32e+01 1qq2A c.47.1.10 33066 1xksA 450 1.40e+01 1a8q 274 1.47e+01 1brt c.69.1.12 34702 1xvqA 175 1.52e+01 1qjpA 171 1.52e+01 1bxwA f.4.1.1 43742 1byrA 155 1.53e+01 1byrA d.136.1.1 41450 1v74A 107 1.56e+01 d.243.1.1 100442 2cu3A 64 1.69e+01 1b24A 188 1.74e+01 1b24A d.95.2.1,d.95.2.1 40573,40574 1ttzA 87 1.75e+01 c.47.1.1 107309 1iscA 192 1.75e+01 1avmA a.2.11.1,d.44.1.1 15733,38726 1w9hA 427 1.77e+01 2cvzA 289 1.81e+01 1h6hA 143 1.83e+01 d.189.1.1 65681 1ztcA 221 2.06e+01 1xfsA 178 2.10e+01 d.129.3.5 109589 1vjfA 180 2.18e+01 d.116.1.1 100809 1odzA 386 2.19e+01 c.1.8.3 86889 1uasA 362 2.24e+01 b.71.1.1,c.1.8.1 88388,88389 1atg 231 2.29e+01 1atg c.94.1.1 35834 1h4rA 314 2.30e+01 a.11.2.1,b.55.1.5,d.15.1.4 65616,65617,65618 1wrvA 308 2.34e+01 1z02A 446 2.40e+01 1g5aA 628 2.42e+01 b.71.1.1,c.1.8.1 65152,65153 1yb3A 175 2.47e+01 1cv8 174 2.54e+01 1cv8 d.3.1.1 37089 1qb5D 99 2.55e+01 b.40.2.1 88357 2ghrA 302 2.62e+01 1m65A 245 2.70e+01 c.6.3.1 84847 1u58A 253 2.71e+01 1k55A 246 2.72e+01 e.3.1.1 68156 1tljA 213 2.83e+01 d.282.1.1 107126 2a25A 193 2.84e+01 1ckaA 57 2.86e+01 1ckaA b.34.2.1 24459 1zu0A 529 2.87e+01 1p2hA 571 2.91e+01 a.138.1.3,c.3.1.4,d.168.1.1 93930,93931,93932 1yirA 408 2.92e+01 1cr5A 189 2.93e+01 1cr5A b.52.2.3,d.31.1.1 26931,38465 1jidA 128 2.96e+01 d.201.1.1 66735 1uu1A 335 2.97e+01 c.67.1.1 99993 1l0bA 229 3.05e+01 c.15.1.3,c.15.1.3 73391,73392 2basA 431 3.06e+01 1yqtA 538 3.07e+01 1vkiA 181 3.10e+01 d.116.1.1 108664 1wm3A 72 3.11e+01 1b9wA 89 3.12e+01 1b9wA g.3.11.4,g.3.11.4 44334,44335 2fhxA 246 3.13e+01 2dg5B 190 3.15e+01 1wh5A 80 3.20e+01 2db9A 149 3.21e+01 1pm1X 180 3.24e+01 b.60.1.1 104189 1bco 327 3.24e+01 1bco b.48.1.1,c.55.3.3 26431,33676 1x0rA 249 3.26e+01 1pufB 73 3.29e+01 a.4.1.1 95132 1htrB 329 3.32e+01 1smrA 1p57A 114 3.39e+01 d.170.1.2 94125 1cuk 203 3.43e+01 1hjp a.5.1.1,a.60.2.1,b.40.4.2 16273,17946,25265 1r77A 103 3.49e+01 1v30A 124 3.62e+01 1nrlA 316 3.64e+01 a.123.1.1 92091 2bf6A 449 3.64e+01 1vqoS 85 3.68e+01 1vbvA 105 3.70e+01 1wdvA 152 3.71e+01 1ryaA 160 3.80e+01 d.113.1.5 105122 1xkiA 162 3.80e+01 1p6oA 161 3.84e+01 c.97.1.2 94185 1kb0A 677 3.88e+01 a.3.1.6,b.70.1.1 68378,68379 2fnjA 226 3.95e+01 1twuA 139 4.01e+01 d.32.1.8 107413 2cx5A 158 4.02e+01 1uhvA 500 4.05e+01 b.71.1.2,c.1.8.3 99402,99403 1ecfA 504 4.06e+01 1ecfB c.61.1.1,d.153.1.1 34053,41820 2esnA 310 4.08e+01 2b59B 172 4.10e+01 1fjgP 88 4.11e+01 1emwA d.27.1.1 38444 1bu6O 501 4.11e+01 1glcG c.55.1.4,c.55.1.4 33499,33500 1gpeA 587 4.15e+01 1gpeA c.3.1.2,d.16.1.1 30387,37951 1zbfA 142 4.20e+01 2fh5A 185 4.20e+01 1cq0A 28 4.27e+01 j.6.1.1 46108 2gcc 70 4.30e+01 2gcc d.10.1.2 37484 1xc3A 302 4.30e+01 1mxiA 160 4.31e+01 c.116.1.1 79646 1gmuA 143 4.31e+01 b.107.1.1,d.58.38.1 65335,65336 2fa8A 105 4.36e+01 1iow 306 4.37e+01 1iow c.30.1.2,d.142.1.1 31713,41481 1pvmA 184 4.38e+01 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 2go8A 122 4.60e+01 1d4oA 184 4.62e+01 1d4oA c.31.1.4 31748 1b8aA 438 4.86e+01 1b8aA b.40.4.1,d.104.1.1 25244,40765 1m6iA 493 4.90e+01 c.3.1.5,c.3.1.5,d.87.1.1 74533,74534,74535 1jtdB 273 4.91e+01 b.69.5.2 67265 1oshA 232 4.94e+01 a.123.1.1 93496 1kwgA 645 5.03e+01 b.71.1.1,c.1.8.1,c.23.16.5 77561,77562,77563 1kaeA 434 5.07e+01 c.82.1.2 72247 1g8kA 825 5.08e+01 1g8jA b.52.2.2,c.81.1.1 26920,35328 1qwdA 177 5.08e+01 b.60.1.1 96471 1bupA 386 5.13e+01 1ba1 c.55.1.1,c.55.1.1 33377,33378 2cfuA 658 5.16e+01 1kpsB 171 5.20e+01 a.118.12.1 68787 1n13B 113 5.25e+01 1mqeA 207 5.28e+01 d.113.1.1 91394 1jofA 365 5.32e+01 b.69.10.1 71775 1ry9A 145 5.33e+01 d.198.1.1 98094 2cw8A 537 5.35e+01 1bywA 110 5.35e+01 1bywA d.110.3.6 40912 1iujA 106 5.37e+01 d.58.4.5 90701 2evrA 246 5.37e+01 1ehyA 294 5.38e+01 1ehyA c.69.1.11 34693 1kfwA 435 5.41e+01 c.1.8.5,d.26.3.1 77376,77377 1z0wA 207 5.44e+01 2a4hA 126 5.48e+01 2fikA 287 5.50e+01 1huxA 270 5.61e+01 1huxA c.55.1.5 61278 2crvA 120 5.65e+01 1msc 129 5.67e+01 1msc d.85.1.1 40039 2a15A 139 5.75e+01 1qr0A 228 5.84e+01 1qr0A d.150.1.1,d.150.1.1 59038,59039 1wj9A 211 5.90e+01 1gt1A 159 5.95e+01 b.60.1.1 90515 1y88A 199 5.96e+01 1e19A 314 6.00e+01 1b7bA c.73.1.1 34967 2ap1A 327 6.00e+01 1zo2A 129 6.04e+01 1xkzA 255 6.12e+01 1j79A 347 6.20e+01 1j79A c.1.9.4 62675 1tz9A 367 6.33e+01 c.1.15.6 107466 1j09A 468 6.42e+01 a.97.1.1,c.26.1.1 77025,77026 1kq1A 77 6.48e+01 b.38.1.2 72848 1pl3A 186 6.49e+01 b.1.9.1 88158 1zndA 174 6.64e+01 1xxqA 161 6.66e+01 1g38A 393 6.75e+01 2admA c.66.1.27 60235 1csn 298 6.84e+01 1csn d.144.1.7 41664 1hxrA 115 6.85e+01 1fwqA b.88.1.1 28392 1qg7A 67 6.88e+01 1a15A d.9.1.1 37449 1qe3A 489 6.90e+01 2bce c.69.1.1 34630 1z2kA 109 7.07e+01 2a8eA 220 7.11e+01 2grrB 170 7.11e+01 2bjfA 329 7.18e+01 2gu3A 136 7.18e+01 1un3A 123 7.22e+01 d.5.1.1 99646 1te7A 103 7.30e+01 1vggA 161 7.49e+01 1j1tA 233 7.50e+01 b.29.1.18 90771 1xhcA 367 7.53e+01 1y9wA 140 7.57e+01 1zosA 230 7.61e+01 2ciaA 102 7.65e+01 1id0A 152 7.72e+01 d.122.1.3 66111 1aj8A 371 7.75e+01 1aj8A a.103.1.1 18900 1oe8A 211 7.80e+01 a.45.1.1,c.47.1.5 86905,86906 1xqaA 113 7.81e+01 1q7fA 286 7.83e+01 b.68.9.1 96036 1xrkA 124 8.02e+01 2arcA 164 8.06e+01 2arcA b.82.4.1 28148 2bgcA 238 8.09e+01 1yphC 131 8.10e+01 1sz2A 332 8.10e+01 2cohA 202 8.11e+01 1w6sA 599 8.13e+01 1kjvA 284 8.20e+01 b.1.1.2,d.19.1.1 77421,77422 1bhe 376 8.20e+01 1bhe b.80.1.3 28030 1qy1A 174 8.40e+01 b.60.1.1 96568 1qhdA 398 8.44e+01 1qhdA a.115.1.2,b.19.1.1 63324,63325 1i2uA 44 8.58e+01 g.3.7.4 65987 1sqeA 109 8.67e+01 d.58.4.5 105908 1wywA 230 8.68e+01 1k82A 268 8.68e+01 a.156.1.2,b.113.1.1,g.39.1.8 75866,75867,75868 2aa4A 289 8.69e+01 1ri9A 102 8.81e+01 b.34.2.1 97506 2bvcA 486 8.82e+01 2gwnA 452 8.83e+01 1sur 215 8.87e+01 1sur c.26.2.2 31620 1zceA 155 8.88e+01 1m22A 503 8.93e+01 c.117.1.1 78464