# List of top-scoring protein chains for t06-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2f4qA 346 4.30e-02 1lktA 104 2.18e-01 1lktA b.90.1.1 28398 1zkdA 387 5.31e-01 1yx1A 264 5.37e-01 2c3vA 102 6.99e-01 1tp6A 128 7.21e-01 d.17.4.12 107184 2cr5A 109 1.25e+00 1m93C 41 1.32e+00 1cqyA 99 1.53e+00 1b9zA b.3.1.1 22527 2a2pA 129 1.69e+00 1pm1X 180 1.95e+00 b.60.1.1 104189 1ui0A 205 1.99e+00 c.18.1.2 99411 1ijqA 316 2.03e+00 1ijqA b.68.5.1,g.3.11.1 62506,62507 1xvqA 175 2.53e+00 1dcjA 81 2.95e+00 1dcjA d.68.3.3 59115 1yaxA 153 3.00e+00 1qx4A 274 3.08e+00 b.43.4.2,c.25.1.1 104624,104625 1vq2A 193 3.10e+00 1vemA 516 4.07e+00 1txkA 498 4.17e+00 b.1.18.2,b.30.5.9 107425,107426 1zndA 174 4.19e+00 1qy1A 174 4.21e+00 b.60.1.1 96568 1h6hA 143 4.23e+00 d.189.1.1 65681 1wm3A 72 4.28e+00 1qhoA 686 4.37e+00 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21844,22513,27751,28738 1tqzA 133 4.42e+00 1v74A 107 4.53e+00 d.243.1.1 100442 1ffyA 917 4.58e+00 1qu2A a.27.1.1,b.51.1.1,c.26.1.1 16926,26891,31593 3ezmA 101 4.74e+00 3ezmA b.89.1.1 28395 1kllA 130 4.77e+00 d.32.1.2 72720 1xfsA 178 5.16e+00 d.129.3.5 109589 1qmvA 197 5.25e+00 1qq2A c.47.1.10 33066 1mxiA 160 5.58e+00 c.116.1.1 79646 1qhdA 398 5.79e+00 1qhdA a.115.1.2,b.19.1.1 63324,63325 1ztcA 221 6.18e+00 1byrA 155 6.37e+00 1byrA d.136.1.1 41450 1lwdA 413 6.57e+00 c.77.1.1 78265 1f00I 282 6.58e+00 1f00I b.1.14.1,b.1.14.1,d.169.1.3 22368,22369,42439 1vr9A 213 6.84e+00 1jofA 365 6.97e+00 b.69.10.1 71775 1w9hA 427 6.97e+00 1ryaA 160 7.07e+00 d.113.1.5 105122 2cu3A 64 7.08e+00 1l6rA 227 7.11e+00 c.108.1.10 77768 1ne9A 335 7.26e+00 d.108.1.4,d.108.1.4 91839,91840 1qwdA 177 7.30e+00 b.60.1.1 96471 1ecfA 504 7.35e+00 1ecfB c.61.1.1,d.153.1.1 34053,41820 1cv8 174 7.50e+00 1cv8 d.3.1.1 37089 1h4rA 314 8.03e+00 a.11.2.1,b.55.1.5,d.15.1.4 65616,65617,65618 1cdq 77 8.39e+00 1cds g.7.1.3 44459 1iwdA 215 9.04e+00 d.3.1.1 83756 1l0bA 229 9.12e+00 c.15.1.3,c.15.1.3 73391,73392 1dg9A 157 9.42e+00 1dg9A c.44.1.1 32637 1kb0A 677 9.85e+00 a.3.1.6,b.70.1.1 68378,68379 1xwwA 157 1.01e+01 1z2mA 155 1.03e+01 1z02A 446 1.04e+01 2cohA 202 1.05e+01 1qauA 112 1.06e+01 1qauA b.36.1.1 24779 1xc3A 302 1.08e+01 1gmuA 143 1.13e+01 b.107.1.1,d.58.38.1 65335,65336 2bjbA 462 1.17e+01 1p2hA 571 1.18e+01 a.138.1.3,c.3.1.4,d.168.1.1 93930,93931,93932 3nul 130 1.20e+01 3nul d.110.1.1 40891 1iscA 192 1.23e+01 1avmA a.2.11.1,d.44.1.1 15733,38726 1b9wA 89 1.26e+01 1b9wA g.3.11.4,g.3.11.4 44334,44335 2c6cA 707 1.28e+01 1umkA 275 1.30e+01 1qjpA 171 1.30e+01 1bxwA f.4.1.1 43742 1wywA 230 1.31e+01 1uasA 362 1.34e+01 b.71.1.1,c.1.8.1 88388,88389 1hw7A 255 1.34e+01 1i7fA d.193.1.1 61297 1q7fA 286 1.40e+01 b.68.9.1 96036 1k55A 246 1.41e+01 e.3.1.1 68156 2ghrA 302 1.41e+01 1qb5D 99 1.43e+01 b.40.2.1 88357 1uhvA 500 1.44e+01 b.71.1.2,c.1.8.3 99402,99403 1vjfA 180 1.50e+01 d.116.1.1 100809 1b24A 188 1.51e+01 1b24A d.95.2.1,d.95.2.1 40573,40574 1npeA 267 1.54e+01 b.68.5.1 92032 1un3A 123 1.61e+01 d.5.1.1 99646 1p57A 114 1.65e+01 d.170.1.2 94125 2cfuA 658 1.67e+01 1xkiA 162 1.68e+01 1hw6A 278 1.84e+01 1frb c.1.7.1 61296 2cvzA 289 1.85e+01 1h0hA 977 1.89e+01 b.52.2.2,c.81.1.1 76435,76436 1uu1A 335 1.90e+01 c.67.1.1 99993 1w41A 101 1.91e+01 1gsa 316 1.92e+01 1gsa c.30.1.3,d.142.1.1 31718,41477 1vetA 124 1.94e+01 d.110.7.1 108553 1y88A 199 1.94e+01 2bkrA 212 1.95e+01 1iow 306 1.97e+01 1iow c.30.1.2,d.142.1.1 31713,41481 2ap1A 327 1.97e+01 2fhxA 246 2.00e+01 1b8aA 438 2.00e+01 1b8aA b.40.4.1,d.104.1.1 25244,40765 1szoA 257 2.00e+01 c.14.1.3 106164 2gcc 70 2.00e+01 2gcc d.10.1.2 37484 1uvqA 197 2.01e+01 b.1.1.2,d.19.1.1 100062,100063 1gt1A 159 2.03e+01 b.60.1.1 90515 1wrvA 308 2.03e+01 1nzjA 298 2.06e+01 c.26.1.1 92377 1fjgP 88 2.07e+01 1emwA d.27.1.1 38444 2fh5A 185 2.15e+01 1x0rA 249 2.23e+01 1vqoS 85 2.24e+01 1d4oA 184 2.30e+01 1d4oA c.31.1.4 31748 1tljA 213 2.36e+01 d.282.1.1 107126 1a8q 274 2.38e+01 1brt c.69.1.12 34702 1yqtA 538 2.42e+01 2esnA 310 2.42e+01 1n13B 113 2.47e+01 1zu0A 529 2.49e+01 1wdvA 152 2.52e+01 2bgiA 272 2.52e+01 1nrlA 316 2.53e+01 a.123.1.1 92091 1iakA 199 2.55e+01 1iakA b.1.1.2,d.19.1.1 21625,38199 2gu3A 136 2.55e+01 1r77A 103 2.56e+01 1cq0A 28 2.56e+01 j.6.1.1 46108 2b59B 172 2.56e+01 1vkiA 181 2.58e+01 d.116.1.1 108664 1bco 327 2.66e+01 1bco b.48.1.1,c.55.3.3 26431,33676 1wfyA 104 2.66e+01 2h3jA 75 2.69e+01 1vbvA 105 2.71e+01 2evrA 246 2.72e+01 1ttzA 87 2.72e+01 c.47.1.1 107309 2dg5B 190 2.78e+01 1j09A 468 2.80e+01 a.97.1.1,c.26.1.1 77025,77026 1kaeA 434 2.80e+01 c.82.1.2 72247 1xxqA 161 2.90e+01 1kpsB 171 2.91e+01 a.118.12.1 68787 1dpgA 485 2.92e+01 1dpgA c.2.1.3,d.81.1.5 30074,39989 1z0wA 207 3.03e+01 1pylA 97 3.06e+01 d.1.1.2 104391 1b0uA 262 3.11e+01 1b0uA c.37.1.12 32370 2a25A 193 3.16e+01 1mqeA 207 3.17e+01 d.113.1.1 91394 1xkgA 312 3.22e+01 1w6sA 599 3.26e+01 1am2 199 3.26e+01 1am2 b.86.1.2 28381 2aa4A 289 3.27e+01 1sur 215 3.31e+01 1sur c.26.2.2 31620 2db9A 149 3.32e+01 1htrB 329 3.34e+01 1smrA 1xk5A 204 3.37e+01 1kutA 230 3.41e+01 d.143.1.1 73017 1u58A 253 3.53e+01 1uocA 289 3.59e+01 c.55.3.9 99686 1qg7A 67 3.61e+01 1a15A d.9.1.1 37449 1gqzA 274 3.63e+01 d.21.1.1,d.21.1.1 83311,83312 1vjvA 415 3.63e+01 d.3.1.9 108632 1u00A 227 3.64e+01 1h80A 464 3.66e+01 b.80.1.8 65714 2fnjA 226 3.69e+01 1tedA 393 3.71e+01 c.95.1.2 106807 1e25A 282 3.71e+01 1e25A e.3.1.1 42731 1dmhA 311 3.74e+01 1dmhA b.3.6.1 22633 1huxA 270 3.75e+01 1huxA c.55.1.5 61278 1ppjD 241 3.76e+01 a.3.1.3,f.23.11.1 104258,104259 1vcdA 126 3.80e+01 2gwnA 452 3.86e+01 1g8kA 825 3.93e+01 1g8jA b.52.2.2,c.81.1.1 26920,35328 1f2tB 148 3.94e+01 1f2tB 1y8qB 640 3.96e+01 2fq9A 225 3.99e+01 1kfwA 435 4.09e+01 c.1.8.5,d.26.3.1 77376,77377 1y9wA 140 4.15e+01 1sz2A 332 4.16e+01 1ispA 181 4.18e+01 c.69.1.18 76778 1pufB 73 4.20e+01 a.4.1.1 95132 1v30A 124 4.20e+01 1xqaA 113 4.26e+01 2crvA 120 4.32e+01 1yb3A 175 4.33e+01 2grrB 170 4.34e+01 1xksA 450 4.37e+01 1ospO 257 4.40e+01 1ospO b.76.1.1 27971 1rewC 135 4.45e+01 g.7.1.3 97336 1eceA 358 4.46e+01 1eceA c.1.8.3 28813 1g5aA 628 4.47e+01 b.71.1.1,c.1.8.1 65152,65153 1va4A 279 4.47e+01 c.69.1.12 108458 1oapA 109 4.51e+01 d.79.7.1 92706 2go8A 122 4.52e+01 1gpeA 587 4.65e+01 1gpeA c.3.1.2,d.16.1.1 30387,37951 1u7pA 164 4.69e+01 1oxxK 353 4.79e+01 b.40.6.3,c.37.1.12 93715,93716 1te7A 103 4.82e+01 1xf1A 926 4.83e+01 2g09A 297 4.85e+01 1pvmA 184 4.86e+01 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 1c96A 753 4.87e+01 1amj c.8.2.1,c.83.1.1 30727,35403 1ju2A 536 4.91e+01 c.3.1.2,d.16.1.1 77169,77170 1i8aA 189 4.94e+01 1i82A b.1.9.2 61951 1pjxA 314 4.95e+01 b.68.6.1 104167 2a15A 139 4.97e+01 1z47A 355 4.99e+01 1qqp1 213 4.99e+01 1qqp1 1xvsA 126 5.07e+01 1oshA 232 5.14e+01 a.123.1.1 93496 1bywA 110 5.18e+01 1bywA d.110.3.6 40912 2bgcA 238 5.24e+01 1lgpA 116 5.26e+01 b.26.1.2 73890 1xrkA 124 5.28e+01 2cmuA 342 5.30e+01 1ri9A 102 5.31e+01 b.34.2.1 97506 1o7nA 449 5.31e+01 b.33.1.2,d.129.3.3 81162,81163 1jb0E 75 5.33e+01 1pse b.34.4.2 62824 1wn5A 130 5.42e+01 1j79A 347 5.42e+01 1j79A c.1.9.4 62675 2bjfA 329 5.43e+01 1l2tA 235 5.46e+01 c.37.1.12 73514 2b3yA 888 5.49e+01 1m65A 245 5.49e+01 c.6.3.1 84847 4ubpC 570 5.54e+01 1ubpC b.92.1.1,c.1.9.2 28431,29053 2cw9A 194 5.54e+01 1cr5A 189 5.54e+01 1cr5A b.52.2.3,d.31.1.1 26931,38465 1j1tA 233 5.56e+01 b.29.1.18 90771 1vplA 256 5.60e+01 1k8kA 418 5.61e+01 c.55.1.1,c.55.1.1 68305,68306 2a5hA 416 5.63e+01 1qlwA 328 5.68e+01 1qlwA c.69.1.15 34722 2cx5A 158 5.70e+01 1ugiA 84 5.74e+01 1ugiA d.17.5.1 38125 1qveA 126 5.74e+01 d.24.1.1 104594 1x6oA 174 5.74e+01 b.34.5.2,b.40.4.5 109493,109494 1ykjA 394 5.74e+01 2a74B 188 5.82e+01 1m4jA 142 5.84e+01 d.109.1.2 78602 1sr8A 298 5.90e+01 e.54.1.1 105959 1e19A 314 5.93e+01 1b7bA c.73.1.1 34967 1wj9A 211 5.96e+01 1x54A 434 6.05e+01 2c4xA 260 6.05e+01 1g8aA 227 6.07e+01 c.66.1.3 90506 1lfdA 87 6.08e+01 1lfdA d.15.1.5 37622 1k07A 263 6.08e+01 d.157.1.1 77218 1bxyA 60 6.09e+01 1bxyA d.59.1.1 39525 1pot 325 6.16e+01 1pot c.94.1.1 35807 1fp1D 372 6.21e+01 1fpqA a.4.5.29,c.66.1.12 59939,59940 1jidA 128 6.32e+01 d.201.1.1 66735 2ewcA 126 6.35e+01 1u5xA 140 6.37e+01 1q1uA 144 6.39e+01 b.42.1.1 95608 1i0rA 169 6.44e+01 1i0rA b.45.1.2 61489 1p6oA 161 6.45e+01 c.97.1.2 94185 1w4tA 299 6.46e+01 2basA 431 6.66e+01 2h1tA 188 6.67e+01 1atg 231 6.67e+01 1atg c.94.1.1 35834 1r1qA 100 6.70e+01 d.93.1.1 104763 1j58A 385 6.72e+01 b.82.1.2 71531 1or0B 528 6.72e+01 1to4A 156 6.76e+01 b.1.8.1 107162 1bu6O 501 6.76e+01 1glcG c.55.1.4,c.55.1.4 33499,33500 1gtkA 313 6.81e+01 c.94.1.1,d.50.2.1 76346,76347 1c44A 123 6.89e+01 1qndA d.106.1.1 40795 1twuA 139 6.92e+01 d.32.1.8 107413 1wh5A 80 6.96e+01 1ru3A 732 6.96e+01 e.26.1.3 97835 1ayaA 101 6.96e+01 1qadA d.93.1.1 40460 1pl3A 186 7.01e+01 b.1.9.1 88158 1q7lB 88 7.02e+01 2gfoA 396 7.05e+01 2gaiA 633 7.06e+01 1zosA 230 7.07e+01 2dg5A 366 7.12e+01 1k0iA 394 7.13e+01 c.3.1.2,d.16.1.2 67942,67943 2bvcA 486 7.15e+01 1tmxA 293 7.16e+01 1vggA 161 7.21e+01 2bryA 497 7.21e+01 1i07A 60 7.24e+01 1aojA b.34.2.1 61477 1oe8A 211 7.26e+01 a.45.1.1,c.47.1.5 86905,86906 2cc0A 195 7.29e+01 1dbqA 289 7.31e+01 1qpzA c.93.1.1 35666 1jtdB 273 7.35e+01 b.69.5.2 67265 2fl7A 232 7.45e+01 1l7aA 318 7.45e+01 c.69.1.25 77772 1cb8A 678 7.51e+01 1cb8A a.102.3.2,b.24.1.1,b.30.5.2 18849,23898,24422 1whzA 70 7.59e+01 1o50A 157 7.61e+01 d.37.1.1,d.37.1.1 92478,92479 1t1gA 364 7.61e+01 c.41.1.2 106246 2d1uA 104 7.65e+01 2fikA 287 7.68e+01 1u14A 172 7.69e+01 c.51.4.3 107579 1zg2A 107 7.70e+01 2c4nA 250 7.74e+01 1lf7A 182 7.90e+01 b.60.1.1 73878 1v1aA 309 7.95e+01 c.72.1.1 100249 2bkdN 134 7.98e+01 1q0qA 406 8.00e+01 a.69.3.1,c.2.1.3,d.81.1.3 104464,104465,104466 1lrzA 426 8.01e+01 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 1voqa 90 8.03e+01 1qe3A 489 8.06e+01 2bce c.69.1.1 34630 1szhA 161 8.21e+01 a.226.1.1 106157 1pwaA 162 8.24e+01 b.42.1.1 95211 1j5pA 253 8.39e+01 d.81.1.3,c.2.1.3 71577,83092 1ey4A 149 8.40e+01 1snc b.40.1.1 24815 1sc6A 404 8.43e+01 1yphC 131 8.45e+01 2dafA 118 8.47e+01 1n9lA 109 8.50e+01 d.110.3.6 85468 1cuk 203 8.56e+01 1hjp a.5.1.1,a.60.2.1,b.40.4.2 16273,17946,25265 1msc 129 8.67e+01 1msc d.85.1.1 40039 1zvkA 358 8.71e+01 1ymqA 261 8.72e+01 1q4uA 151 8.72e+01 d.38.1.5 95828 1eg5A 384 8.73e+01 1ecxA c.67.1.3 34429 1f9zA 135 8.77e+01 1qipA d.32.1.1 38484 1zboA 210 8.80e+01 1y81A 138 8.80e+01 1bquA 215 8.83e+01 1bquA b.1.2.1,b.1.2.1 22066,22067 1x8bA 289 8.84e+01 1gqiA 708 8.84e+01 c.1.8.10,d.92.2.2 76279,76280 1xhcA 367 8.93e+01 2arcA 164 8.97e+01 2arcA b.82.4.1 28148 1m9xC 146 9.00e+01 a.73.1.1 84907