# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ffyA 917 7.64e-02 1qu2A a.27.1.1,b.51.1.1,c.26.1.1 16926,26891,31593 2f4qA 346 2.84e-01 2c3vA 102 3.49e-01 1yaxA 153 5.19e-01 1qx4A 274 5.98e-01 b.43.4.2,c.25.1.1 104624,104625 1b24A 188 9.98e-01 1b24A d.95.2.1,d.95.2.1 40573,40574 2a2pA 129 2.19e+00 1mxiA 160 2.24e+00 c.116.1.1 79646 1jsf 130 3.23e+00 3lzt d.2.1.2 36410 1vq2A 193 3.70e+00 1lniA 96 4.09e+00 d.1.1.2 74046 1yksA 440 4.32e+00 1qgtA 149 4.89e+00 1qgtA a.62.1.1 18135 1iscA 192 5.35e+00 1avmA a.2.11.1,d.44.1.1 15733,38726 2fafA 608 5.79e+00 1tqzA 133 6.62e+00 1bouA 139 7.42e+00 1bouA a.88.1.1 18521 1szoA 257 7.91e+00 c.14.1.3 106164 1umkA 275 8.85e+00 2cfuA 658 8.86e+00 1n82A 331 9.12e+00 c.1.8.3 91703 1y8qB 640 9.93e+00 1w41A 101 1.01e+01 1tp6A 128 1.03e+01 d.17.4.12 107184 2a4hA 126 1.03e+01 1izmA 184 1.03e+01 a.199.1.1 90725 3kvt 115 1.12e+01 1t1dA d.42.1.2 38642 1gsa 316 1.18e+01 1gsa c.30.1.3,d.142.1.1 31718,41477 1bquA 215 1.19e+01 1bquA b.1.2.1,b.1.2.1 22066,22067 1ttzA 87 1.25e+01 c.47.1.1 107309 1vetA 124 1.26e+01 d.110.7.1 108553 1ui0A 205 1.27e+01 c.18.1.2 99411 1lkkA 105 1.38e+01 1lckA d.93.1.1 40412 1vhnA 318 1.39e+01 c.1.4.1 100693 1hb6A 86 1.41e+01 a.11.1.1 70959 1zkdA 387 1.46e+01 1omrA 201 1.48e+01 a.39.1.5 93349 1g5aA 628 1.49e+01 b.71.1.1,c.1.8.1 65152,65153 1i3dA 146 1.51e+01 a.1.1.2 61587 1xhcA 367 1.58e+01 2cr5A 109 1.68e+01 1twfK 120 1.76e+01 1l1qA 186 1.78e+01 c.61.1.1 77653 1ne9A 335 1.80e+01 d.108.1.4,d.108.1.4 91839,91840 1qhoA 686 1.82e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21844,22513,27751,28738 1byrA 155 1.90e+01 1byrA d.136.1.1 41450 2a25A 193 2.17e+01 1fjgP 88 2.18e+01 1emwA d.27.1.1 38444 1d4oA 184 2.36e+01 1d4oA c.31.1.4 31748 1p6oA 161 2.42e+01 c.97.1.2 94185 1lktA 104 2.51e+01 1lktA b.90.1.1 28398 1yx1A 264 2.52e+01 1rklA 36 2.57e+01 f.23.30.1 97615 1ztcA 221 2.58e+01 1zy9A 564 2.70e+01 1dk8A 147 2.90e+01 1agrE a.91.1.1 18548 1v0jA 399 2.96e+01 1o7fA 469 3.00e+01 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 2cspA 130 3.01e+01 1b9wA 89 3.06e+01 1b9wA g.3.11.4,g.3.11.4 44334,44335 1xd8A 289 3.06e+01 1zbfA 142 3.08e+01 1vr9A 213 3.13e+01 1rxqA 178 3.21e+01 a.213.1.1 105118 1wn5A 130 3.30e+01 1vr8A 142 3.34e+01 2cu3A 64 3.42e+01 2cwzA 141 3.49e+01 1j3bA 529 3.59e+01 c.91.1.1,c.109.1.1 77071,77072 1lwdA 413 3.63e+01 c.77.1.1 78265 1un3A 123 3.65e+01 d.5.1.1 99646 2fa8A 105 3.70e+01 1nd4A 264 3.90e+01 d.144.1.6 91815 1mhnA 59 3.91e+01 b.34.9.1 84964 1geaA 21 3.96e+01 j.81.1.1 60464 1zetA 388 4.07e+01 1bkrA 109 4.12e+01 1bkrA a.40.1.1 17394 1tkeA 224 4.13e+01 1ugjA 141 4.18e+01 b.41.1.3 107826 1ur1A 378 4.32e+01 c.1.8.3 99804 1nkiA 135 4.38e+01 d.32.1.2 91941 1s6xA 34 4.46e+01 2fc7A 82 4.54e+01 1krs 120 4.54e+01 1krs b.40.4.1 25256 2b59B 172 4.63e+01 1k55A 246 4.65e+01 e.3.1.1 68156 1qauA 112 4.65e+01 1qauA b.36.1.1 24779 1mgrA 99 4.66e+01 d.1.1.2 79106 1q35A 320 4.94e+01 c.94.1.1 95661 1cqyA 99 4.96e+01 1b9zA b.3.1.1 22527 1om4A 422 5.01e+01 d.174.1.1 87067 2cruA 118 5.01e+01 1n1bA 549 5.33e+01 a.102.4.1,a.128.1.3 79799,79800 1izoA 417 5.56e+01 a.104.1.1 83851 2frnA 278 5.63e+01 1dcjA 81 5.70e+01 1dcjA d.68.3.3 59115 1uvqA 197 5.71e+01 b.1.1.2,d.19.1.1 100062,100063 2ey4C 82 5.75e+01 1vbvA 105 5.75e+01 1iakA 199 5.76e+01 1iakA b.1.1.2,d.19.1.1 21625,38199 1vmjA 151 5.89e+01 1pylA 97 5.94e+01 d.1.1.2 104391 1vfrA 218 5.97e+01 1vfrA d.90.1.1 40247 1cdq 77 6.12e+01 1cds g.7.1.3 44459 1v30A 124 6.19e+01 1np7A 489 6.21e+01 a.99.1.1,c.28.1.1 80677,80678 1u5xA 140 6.22e+01 1b77A 228 6.29e+01 1b77A d.131.1.2,d.131.1.2 41362,41363 1cnt1 187 6.35e+01 1cnt3 1khbA 625 6.38e+01 c.91.1.1,c.109.1.1 68606,68607 1h6hA 143 6.39e+01 d.189.1.1 65681 1g8kA 825 6.45e+01 1g8jA b.52.2.2,c.81.1.1 26920,35328 1txkA 498 6.52e+01 b.1.18.2,b.30.5.9 107425,107426 1qmvA 197 6.59e+01 1qq2A c.47.1.10 33066 1ng2A 193 6.68e+01 b.34.2.1,b.34.2.1 85660,85661 1f00I 282 6.71e+01 1f00I b.1.14.1,b.1.14.1,d.169.1.3 22368,22369,42439 1vjvA 415 6.79e+01 d.3.1.9 108632 1woyA 500 6.85e+01 1irdB 146 6.90e+01 a.1.1.2 66287 1qjpA 171 6.92e+01 1bxwA f.4.1.1 43742 1go4A 205 6.93e+01 d.135.1.1 70292 1pufB 73 6.99e+01 a.4.1.1 95132 1pvmA 184 7.08e+01 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 2bkaA 242 7.10e+01 1xvsA 126 7.13e+01 1xkiA 162 7.19e+01 1zosA 230 7.24e+01 1i2uA 44 7.29e+01 g.3.7.4 65987 1vjfA 180 7.32e+01 d.116.1.1 100809 1cr5A 189 7.35e+01 1cr5A b.52.2.3,d.31.1.1 26931,38465 1r6fA 310 7.44e+01 e.46.1.1 97149 1xtqA 177 7.49e+01 2ga9A 297 7.51e+01 1jogA 146 7.58e+01 a.24.16.2 77142 2ciaA 102 7.66e+01 1gt1A 159 7.78e+01 b.60.1.1 90515 1yuzA 202 7.88e+01 1qy1A 174 7.93e+01 b.60.1.1 96568 1xwwA 157 7.99e+01 1oshA 232 8.12e+01 a.123.1.1 93496 1qfoA 119 8.22e+01 1qfoA b.1.1.1 19708 1i8oA 114 8.39e+01 1ycc a.3.1.1 61979 1hp8 68 8.41e+01 1hp8 a.17.1.1 16399 1ldjA 760 8.41e+01 a.4.5.34,a.118.17.1,e.40.1.1 73847,73848,73849 1aj8A 371 8.43e+01 1aj8A a.103.1.1 18900 2bgcA 238 8.47e+01 1qe3A 489 8.48e+01 2bce c.69.1.1 34630 1ofzA 312 8.53e+01 b.68.8.1 86978 1gwmA 153 8.55e+01 b.18.1.19 83348 2d1uA 104 8.65e+01 1s3rA 535 8.77e+01 1uhvA 500 8.84e+01 b.71.1.2,c.1.8.3 99402,99403 1ugxA 133 8.84e+01 1kafA 108 8.86e+01 d.199.1.1 68372 1dg9A 157 8.96e+01 1dg9A c.44.1.1 32637 1bn7A 294 8.99e+01 1bn6A c.69.1.8 34677