# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2f4qA 346 1.43e-01 1yaxA 153 4.40e-01 1ffyA 917 5.03e-01 1qu2A a.27.1.1,b.51.1.1,c.26.1.1 16926,26891,31593 1lktA 104 5.19e-01 1lktA b.90.1.1 28398 1qx4A 274 1.58e+00 b.43.4.2,c.25.1.1 104624,104625 1yx1A 264 1.70e+00 2c3vA 102 2.10e+00 1tp6A 128 2.12e+00 d.17.4.12 107184 1zkdA 387 3.61e+00 1ndh 272 3.75e+00 1ndh b.43.4.2,c.25.1.1 25662,31552 1i7pA 274 3.95e+00 b.43.4.2,c.25.1.1 66048,66049 1m93C 41 4.31e+00 1cqyA 99 4.86e+00 1b9zA b.3.1.1 22527 3ezmA 101 6.09e+00 3ezmA b.89.1.1 28395 1dcjA 81 6.22e+00 1dcjA d.68.3.3 59115 2a2pA 129 6.54e+00 1umkA 275 6.90e+00 1hw7A 255 7.03e+00 1i7fA d.193.1.1 61297 1gsa 316 7.94e+00 1gsa c.30.1.3,d.142.1.1 31718,41477 1ui0A 205 8.08e+00 c.18.1.2 99411 1dg9A 157 8.65e+00 1dg9A c.44.1.1 32637 1tqzA 133 8.78e+00 1skoA 143 8.99e+00 d.110.7.1 105676 1ijqA 316 9.07e+00 1ijqA b.68.5.1,g.3.11.1 62506,62507 1xwwA 157 9.07e+00 1o8uA 257 9.16e+00 c.14.1.3 81194 1szoA 257 9.16e+00 c.14.1.3 106164 1cdq 77 9.31e+00 1cds g.7.1.3 44459 1c0eA 157 9.46e+00 1dg9A c.44.1.1 32638 3nul 130 9.94e+00 3nul d.110.1.1 40891 1f00I 282 9.97e+00 1f00I b.1.14.1,b.1.14.1,d.169.1.3 22368,22369,42439 1mkeA 152 1.00e+01 b.55.1.4 79231 1lwdA 413 1.02e+01 c.77.1.1 78265 1vetA 124 1.08e+01 d.110.7.1 108553 2bjbA 462 1.13e+01 1woyA 500 1.15e+01 1zq7A 207 1.23e+01 1txkA 498 1.27e+01 b.1.18.2,b.30.5.9 107425,107426 1w41A 101 1.27e+01 1y8qB 640 1.28e+01 1a8q 274 1.31e+01 1brt c.69.1.12 34702 1vr9A 213 1.32e+01 1h7mA 102 1.34e+01 d.79.3.1 83485 1m7xA 617 1.42e+01 b.1.18.2,b.71.1.1,c.1.8.1 78749,78750,78751 1qauA 112 1.42e+01 1qauA b.36.1.1 24779 1u0tA 307 1.52e+01 e.52.1.1 107567 2cr5A 109 1.54e+01 1qhoA 686 1.55e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21844,22513,27751,28738 1m9sA 605 1.71e+01 b.1.18.15,b.34.11.1,b.34.11.1,b.34.11.1,c.10.2.1 78874,78875,78876,78877,78878 1omiA 248 1.76e+01 b.82.3.3,a.4.5.4 87079,87080 1tzaA 134 1.80e+01 b.1.23.1 107468 1vjvA 415 1.83e+01 d.3.1.9 108632 1y8cA 246 1.89e+01 2cvzA 289 1.96e+01 1ttzA 87 1.97e+01 c.47.1.1 107309 1xvqA 175 2.01e+01 1b24A 188 2.03e+01 1b24A d.95.2.1,d.95.2.1 40573,40574 1h4rA 314 2.04e+01 a.11.2.1,b.55.1.5,d.15.1.4 65616,65617,65618 1vq2A 193 2.07e+01 1qmvA 197 2.09e+01 1qq2A c.47.1.10 33066 1ztcA 221 2.10e+01 1uasA 362 2.12e+01 b.71.1.1,c.1.8.1 88388,88389 1iscA 192 2.12e+01 1avmA a.2.11.1,d.44.1.1 15733,38726 1ne9A 335 2.12e+01 d.108.1.4,d.108.1.4 91839,91840 1vemA 516 2.13e+01 1itcA 516 2.19e+01 b.3.1.1,c.1.8.1 83705,83706 1iwdA 215 2.20e+01 d.3.1.1 83756 1wrvA 308 2.24e+01 1atg 231 2.24e+01 1atg c.94.1.1 35834 1v74A 107 2.28e+01 d.243.1.1 100442 1qjpA 171 2.32e+01 1bxwA f.4.1.1 43742 1odzA 386 2.37e+01 c.1.8.3 86889 2bzoB 79 2.47e+01 2cu3A 64 2.51e+01 2fhxA 246 2.65e+01 1uu1A 335 2.69e+01 c.67.1.1 99993 1byrA 155 2.69e+01 1byrA d.136.1.1 41450 1vjfA 180 2.73e+01 d.116.1.1 100809 1obr 326 2.77e+01 1aye c.56.5.2 33828 1kllA 130 2.84e+01 d.32.1.2 72720 1w9hA 427 2.99e+01 2bkqA 212 3.00e+01 1zu0A 529 3.11e+01 1a8h 500 3.15e+01 1a8h a.27.1.1,c.26.1.1 16922,31589 1xt9A 212 3.16e+01 1yirA 408 3.20e+01 1h6hA 143 3.21e+01 d.189.1.1 65681 1xfsA 178 3.25e+01 d.129.3.5 109589 2dg5B 190 3.33e+01 1pufB 73 3.34e+01 a.4.1.1 95132 2basA 431 3.34e+01 2fbmA 291 3.37e+01 1xksA 450 3.38e+01 1jidA 128 3.64e+01 d.201.1.1 66735 1bco 327 3.64e+01 1bco b.48.1.1,c.55.3.3 26431,33676 1cuk 203 3.67e+01 1hjp a.5.1.1,a.60.2.1,b.40.4.2 16273,17946,25265 1k2fA 190 3.70e+01 b.8.1.2 68054 1cv8 174 3.72e+01 1cv8 d.3.1.1 37089 2b59B 172 3.72e+01 2ghrA 302 3.75e+01 1yqtA 538 3.76e+01 1m65A 245 3.78e+01 c.6.3.1 84847 2fa8A 105 3.86e+01 1qb5D 99 3.89e+01 b.40.2.1 88357 1htrB 329 3.90e+01 1smrA 1l0bA 229 3.91e+01 c.15.1.3,c.15.1.3 73391,73392 2a25A 193 3.94e+01 1g5aA 628 3.94e+01 b.71.1.1,c.1.8.1 65152,65153 1tiiD 99 3.95e+01 1tiiD b.40.2.1 24965 1kwgA 645 4.02e+01 b.71.1.1,c.1.8.1,c.23.16.5 77561,77562,77563 1b9wA 89 4.02e+01 1b9wA g.3.11.4,g.3.11.4 44334,44335 1m6iA 493 4.04e+01 c.3.1.5,c.3.1.5,d.87.1.1 74533,74534,74535 1vkiA 181 4.06e+01 d.116.1.1 108664 1j9yA 385 4.12e+01 1j9yA c.1.8.3 62791 1u58A 253 4.13e+01 1ckaA 57 4.24e+01 1ckaA b.34.2.1 24459 1ryaA 160 4.29e+01 d.113.1.5 105122 1p6oA 161 4.30e+01 c.97.1.2 94185 1e3uA 246 4.31e+01 1fofA e.3.1.1 42755 1wm3A 72 4.34e+01 2db9A 149 4.36e+01 1cr5A 189 4.40e+01 1cr5A b.52.2.3,d.31.1.1 26931,38465 1gmuA 143 4.41e+01 b.107.1.1,d.58.38.1 65335,65336 1zbfA 142 4.46e+01 1k55A 246 4.50e+01 e.3.1.1 68156 1x0rA 249 4.53e+01 2go8A 122 4.55e+01 1pm1X 180 4.60e+01 b.60.1.1 104189 1icxA 155 4.63e+01 d.129.3.1 71191 1iujA 106 4.64e+01 d.58.4.5 90701 1kssA 571 4.66e+01 a.138.1.3,c.3.1.4,d.168.1.1 72928,72929,72930 1b72B 87 4.67e+01 1akhA a.4.1.1 16001 1vbvA 105 4.70e+01 1q9iA 571 4.72e+01 a.138.1.3,c.3.1.4,d.168.1.1 96273,96274,96275 2bzuA 181 4.78e+01 1e39A 571 4.82e+01 1qjdA a.138.1.3,c.3.1.4,d.168.1.1 19694,30431,42314 2pil 159 4.82e+01 2pil d.24.1.1 38376 1pqzA 238 4.85e+01 b.1.1.2,d.19.1.1 104297,104298 1z02A 446 4.86e+01 1p2hA 571 4.86e+01 a.138.1.3,c.3.1.4,d.168.1.1 93930,93931,93932 1y0pA 571 4.87e+01 1jj2R 84 4.88e+01 1ffkP d.12.1.1 63103 1s72S 85 4.88e+01 d.12.1.1 105338 1xkiA 162 4.99e+01 2cx5A 158 5.00e+01 1kz1A 159 5.06e+01 c.16.1.1 73318 1ecfA 504 5.14e+01 1ecfB c.61.1.1,d.153.1.1 34053,41820 1gpeA 587 5.20e+01 1gpeA c.3.1.2,d.16.1.1 30387,37951 1vqoS 85 5.20e+01 1r77A 103 5.20e+01 2fnjA 226 5.20e+01 1uhvA 500 5.26e+01 b.71.1.2,c.1.8.3 99402,99403 2gcc 70 5.28e+01 2gcc d.10.1.2 37484 1v30A 124 5.29e+01 1pda 315 5.29e+01 1pda c.94.1.1,d.50.2.1 35751,38794 1l6sA 323 5.39e+01 c.1.10.3 73627 2esnA 310 5.41e+01 1jtdB 273 5.49e+01 b.69.5.2 67265 1wh5A 80 5.53e+01 1tljA 213 5.53e+01 d.282.1.1 107126 1cq0A 28 5.58e+01 j.6.1.1 46108 1d0iA 156 5.60e+01 2dhqA c.23.13.1 31383 2a4hA 126 5.65e+01 1pvmA 184 5.67e+01 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 1nrlA 316 5.68e+01 a.123.1.1 92091 1bu6O 501 5.69e+01 1glcG c.55.1.4,c.55.1.4 33499,33500 1kb0A 677 5.73e+01 a.3.1.6,b.70.1.1 68378,68379 1zyeA 220 5.79e+01 1yb3A 175 5.81e+01 1htqA 477 5.82e+01 d.15.9.1,d.128.1.1 71035,71036 2bf6A 449 5.90e+01 2fh5A 185 5.95e+01 1mxiA 160 5.96e+01 c.116.1.1 79646 1kay 381 6.01e+01 1ba1 c.55.1.1,c.55.1.1 33385,33386 1bupA 386 6.04e+01 1ba1 c.55.1.1,c.55.1.1 33377,33378 2bs9A 503 6.08e+01 1msc 129 6.08e+01 1msc d.85.1.1 40039 1ccwB 483 6.09e+01 1cb7B c.1.19.2 29646 1oshA 232 6.17e+01 a.123.1.1 93496 1twuA 139 6.28e+01 d.32.1.8 107413 1fjgP 88 6.29e+01 1emwA d.27.1.1 38444 1z0wA 207 6.32e+01 1te7A 103 6.33e+01 1p57A 114 6.34e+01 d.170.1.2 94125 1kaeA 434 6.34e+01 c.82.1.2 72247 1sqeA 109 6.39e+01 d.58.4.5 105908 2comA 124 6.47e+01 1i0cA 60 6.47e+01 1aojA b.34.2.1 61485 3chy 128 6.57e+01 3chy c.23.1.1 31038 1i8jA 323 6.60e+01 1b4kA c.1.10.3 61968 1jofA 365 6.62e+01 b.69.10.1 71775 1bywA 110 6.63e+01 1bywA d.110.3.6 40912 2cfuA 658 6.72e+01 1kfwA 435 6.75e+01 c.1.8.5,d.26.3.1 77376,77377 1y3jA 77 6.77e+01 1qwdA 177 6.81e+01 b.60.1.1 96471 1mqeA 207 6.88e+01 d.113.1.1 91394 1uh6A 100 6.89e+01 d.15.1.1 99394 1xc3A 302 6.96e+01 1huxA 270 6.96e+01 1huxA c.55.1.5 61278 1wdvA 152 6.98e+01 1ry9A 145 7.00e+01 d.198.1.1 98094 1d4oA 184 7.10e+01 1d4oA c.31.1.4 31748 1b22A 114 7.18e+01 1b22A a.60.4.1 17969 2crvA 120 7.33e+01 2bfgA 503 7.38e+01 1iow 306 7.38e+01 1iow c.30.1.2,d.142.1.1 31713,41481 1hxrA 115 7.46e+01 1fwqA b.88.1.1 28392 2evrA 246 7.48e+01 2bjfA 329 7.73e+01 1b8aA 438 7.73e+01 1b8aA b.40.4.1,d.104.1.1 25244,40765 1kpsB 171 7.78e+01 a.118.12.1 68787 2akrA 285 7.82e+01 1n13B 113 7.91e+01 1g8kA 825 7.97e+01 1g8jA b.52.2.2,c.81.1.1 26920,35328 1e19A 314 8.04e+01 1b7bA c.73.1.1 34967 1aj8A 371 8.14e+01 1aj8A a.103.1.1 18900 2fikA 287 8.25e+01 1obpA 159 8.30e+01 1obpA b.60.1.1 27092 1xhcA 367 8.34e+01 1hn2A 159 8.35e+01 b.60.1.1 65890 1gt1A 159 8.35e+01 b.60.1.1 90515 1hw6A 278 8.36e+01 1frb c.1.7.1 61296 1tz9A 367 8.42e+01 c.1.15.6 107466 1kq1A 77 8.49e+01 b.38.1.2 72848 1qr0A 228 8.49e+01 1qr0A d.150.1.1,d.150.1.1 59038,59039 2a15A 139 8.49e+01 1gtzA 156 8.53e+01 c.23.13.1 70539 1xa1A 255 8.58e+01 e.3.1.1 109529 1z2kA 109 8.59e+01 1a88A 275 8.65e+01 1brt c.69.1.12 34707 1id0A 152 8.70e+01 d.122.1.3 66111 1j79A 347 8.75e+01 1j79A c.1.9.4 62675 1xqaA 113 8.85e+01 1vgmA 378 8.89e+01 2bgcA 238 8.91e+01 1y88A 199 8.92e+01 1qe3A 489 8.93e+01 2bce c.69.1.1 34630