# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ffyA 917 1.35e-01 1qu2A a.27.1.1,b.51.1.1,c.26.1.1 16926,26891,31593 2f4qA 346 5.59e-01 2c3vA 102 6.03e-01 1b24A 188 8.62e-01 1b24A d.95.2.1,d.95.2.1 40573,40574 1tzaA 134 1.02e+00 b.1.23.1 107468 1yaxA 153 1.12e+00 1qx4A 274 1.56e+00 b.43.4.2,c.25.1.1 104624,104625 1rgeA 96 1.73e+00 1rgeA d.1.1.2 36028 1lniA 96 2.04e+00 d.1.1.2 74046 2a2pA 129 3.73e+00 1qqyA 130 3.86e+00 3lzt d.2.1.2 36586 1tqzA 133 4.06e+00 1woyA 500 4.15e+00 1mxiA 160 4.51e+00 c.116.1.1 79646 2a4hA 126 5.37e+00 1a8h 500 5.92e+00 1a8h a.27.1.1,c.26.1.1 16922,31589 1qgtA 149 6.13e+00 1qgtA a.62.1.1 18135 1lktA 104 6.86e+00 1lktA b.90.1.1 28398 2fafA 608 7.17e+00 1m7xA 617 7.27e+00 b.1.18.2,b.71.1.1,c.1.8.1 78749,78750,78751 1i7pA 274 7.38e+00 b.43.4.2,c.25.1.1 66048,66049 1rpyA 114 7.58e+00 d.93.1.1 97718 1tp6A 128 9.78e+00 d.17.4.12 107184 1ttzA 87 1.12e+01 c.47.1.1 107309 3ezmA 101 1.17e+01 3ezmA b.89.1.1 28395 1lz1 130 1.20e+01 3lzt d.2.1.2 36415 1ui0A 205 1.26e+01 c.18.1.2 99411 1jsf 130 1.29e+01 3lzt d.2.1.2 36410 1ndh 272 1.30e+01 1ndh b.43.4.2,c.25.1.1 25662,31552 1yksA 440 1.37e+01 2pgd 482 1.42e+01 2pgd a.100.1.1,c.2.1.6 18778,30190 1v2yA 105 1.42e+01 d.15.1.1 100275 2cfuA 658 1.42e+01 1hb6A 86 1.51e+01 a.11.1.1 70959 2d2mD 145 1.53e+01 1y8qB 640 1.59e+01 1vq2A 193 1.65e+01 2cr5A 109 1.71e+01 1zkdA 387 1.76e+01 1bouA 139 1.89e+01 1bouA a.88.1.1 18521 1n82A 331 1.90e+01 c.1.8.3 91703 1omiA 248 2.10e+01 b.82.3.3,a.4.5.4 87079,87080 1l1qA 186 2.13e+01 c.61.1.1 77653 1cjbA 231 2.16e+01 1qk3A c.61.1.1 34079 1twfK 120 2.37e+01 1w41A 101 2.55e+01 1iscA 192 2.55e+01 1avmA a.2.11.1,d.44.1.1 15733,38726 1yx1A 264 2.62e+01 1d4oA 184 2.65e+01 1d4oA c.31.1.4 31748 1izoA 417 2.70e+01 a.104.1.1 83851 1szoA 257 2.70e+01 c.14.1.3 106164 1o8uA 257 2.71e+01 c.14.1.3 81194 1wd2A 60 2.75e+01 g.44.1.1 109232 1h7mA 102 2.78e+01 d.79.3.1 83485 1umkA 275 2.83e+01 1ztcA 221 2.83e+01 1i50K 120 2.85e+01 d.74.3.2 61765 3kvt 115 2.94e+01 1t1dA d.42.1.2 38642 1dk8A 147 2.94e+01 1agrE a.91.1.1 18548 1vfrA 218 2.97e+01 1vfrA d.90.1.1 40247 1omrA 201 3.10e+01 a.39.1.5 93349 1mgrA 99 3.17e+01 d.1.1.2 79106 1bquA 215 3.19e+01 1bquA b.1.2.1,b.1.2.1 22066,22067 1o9yA 84 3.41e+01 b.139.1.1 92692 2cu3A 64 3.48e+01 1zy9A 564 3.87e+01 1izmA 184 4.02e+01 a.199.1.1 90725 1wgoA 123 4.04e+01 1i8oA 114 4.13e+01 1ycc a.3.1.1 61979 1k55A 246 4.14e+01 e.3.1.1 68156 1un3A 123 4.15e+01 d.5.1.1 99646 1skoA 143 4.22e+01 d.110.7.1 105676 1xkiA 162 4.25e+01 1obpA 159 4.28e+01 1obpA b.60.1.1 27092 1tkeA 224 4.29e+01 1cqyA 99 4.38e+01 1b9zA b.3.1.1 22527 1lwdA 413 4.43e+01 c.77.1.1 78265 1qhoA 686 4.44e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21844,22513,27751,28738 1xhcA 367 4.49e+01 1hw7A 255 4.50e+01 1i7fA d.193.1.1 61297 1v30A 124 4.53e+01 1t3nA 388 4.57e+01 d.240.1.1,e.8.1.7 106363,106364 1v0jA 399 4.64e+01 1nuuA 252 4.70e+01 c.26.1.3 86209 1s6xA 34 4.71e+01 1hzpA 335 4.72e+01 1hn9A c.95.1.2,c.95.1.2 61455,61456 1vetA 124 4.74e+01 d.110.7.1 108553 1zetA 388 4.82e+01 1gv3A 248 4.86e+01 a.2.11.1,d.44.1.1 70585,70586 1h6hA 143 4.94e+01 d.189.1.1 65681 2frnA 278 4.99e+01 1i3dA 146 5.04e+01 a.1.1.2 61587 1vmjA 151 5.05e+01 1g5aA 628 5.14e+01 b.71.1.1,c.1.8.1 65152,65153 1e3uA 246 5.18e+01 1fofA e.3.1.1 42755 1xd8A 289 5.20e+01 1r6fA 310 5.22e+01 e.46.1.1 97149 2apoB 60 5.31e+01 2cruA 118 5.33e+01 1byrA 155 5.54e+01 1byrA d.136.1.1 41450 1zbfA 142 5.70e+01 1a4yB 123 5.76e+01 7rsa d.5.1.1 37296 1v4eA 299 5.80e+01 a.128.1.1 100296 1mhnA 59 5.81e+01 b.34.9.1 84964 1rwsA 77 5.92e+01 d.15.3.2 97991 1ne9A 335 5.99e+01 d.108.1.4,d.108.1.4 91839,91840 1j3bA 529 6.08e+01 c.91.1.1,c.109.1.1 77071,77072 2fa8A 105 6.09e+01 1u6eA 335 6.12e+01 1fjgP 88 6.14e+01 1emwA d.27.1.1 38444 1g5gA 481 6.17e+01 f.12.1.1,h.3.2.1 65155,65156 1y8cA 246 6.25e+01 1xtqA 177 6.26e+01 1m0wA 491 6.35e+01 c.30.1.4,d.142.1.6 78363,78364 1vbvA 105 6.44e+01 1geaA 21 6.53e+01 j.81.1.1 60464 1n1bA 549 6.61e+01 a.102.4.1,a.128.1.3 79799,79800 1mkmA 249 6.73e+01 a.4.5.33,d.110.2.2 79242,79243 1m9sA 605 6.74e+01 b.1.18.15,b.34.11.1,b.34.11.1,b.34.11.1,c.10.2.1 78874,78875,78876,78877,78878 1vhnA 318 6.86e+01 c.1.4.1 100693 1txkA 498 6.99e+01 b.1.18.2,b.30.5.9 107425,107426 2cwzA 141 7.07e+01 1ur1A 378 7.09e+01 c.1.8.3 99804 1m93C 41 7.13e+01 1ng2A 193 7.17e+01 b.34.2.1,b.34.2.1 85660,85661 1gsa 316 7.24e+01 1gsa c.30.1.3,d.142.1.1 31718,41477 1cnt1 187 7.35e+01 1cnt3 1lkkA 105 7.43e+01 1lckA d.93.1.1 40412 1bby 69 7.49e+01 2bby a.4.5.15 16149 1qjpA 171 7.50e+01 1bxwA f.4.1.1 43742 1hxrA 115 7.54e+01 1fwqA b.88.1.1 28392 1c0eA 157 7.56e+01 1dg9A c.44.1.1 32638 1i2uA 44 7.58e+01 g.3.7.4 65987 2cspA 130 7.66e+01 1yuzA 202 7.70e+01 1vr8A 142 7.79e+01 2aw2A 120 7.79e+01 2alzA 390 7.94e+01 1qauA 112 7.98e+01 1qauA b.36.1.1 24779 1hp8 68 8.05e+01 1hp8 a.17.1.1 16399 1ugxA 133 8.05e+01 1lrwA 600 8.11e+01 b.70.1.1 91111 1xvsA 126 8.16e+01 2aq6A 147 8.16e+01 2comA 124 8.16e+01 1t5yA 190 8.38e+01 b.122.1.1,d.17.6.3 106495,106496 2gclA 261 8.42e+01 1giqA 413 8.48e+01 d.166.1.1,d.166.1.1 76224,76225 1iseA 185 8.57e+01 d.67.3.1 90691 1xwwA 157 8.61e+01 1vkrA 125 8.67e+01 c.44.2.1 108689 2d1uA 104 8.76e+01 1hn2A 159 8.76e+01 b.60.1.1 65890 1khbA 625 8.83e+01 c.91.1.1,c.109.1.1 68606,68607 1dg9A 157 8.83e+01 1dg9A c.44.1.1 32637 1ek8A 185 8.84e+01 1ek8A d.67.3.1 59444 1pufB 73 8.91e+01 a.4.1.1 95132 2fc7A 82 8.96e+01 1vfgA 390 9.00e+01 a.173.1.1,d.218.1.4 108570,108571