Sequence numbers correspond to the following labels:

1. • T0358 NESG:ER397, Escherichia coli, 87 res
2. • gi|75259093|ref|ZP_00730461.1|_5:75 hypothetical protein EcolE2_01001358 [Escherichia coli E22]
3. • gi|88770148|gb|ABD51585.1|_14:84 conserved hypothetical protein [Escherichia coli]
4. • gi|37962737|gb|AAR05684.1|_7:77 conserved hypothetical protein [Salmonella typhimurium]
   • gi|58383258|ref|YP_194828.1| hypothetical protein pU302L_021 [Salmonella typhimurium]
5. • gi|38606100|gb|AAR25064.1|_7:77 YdeA [Escherichia coli]
   • gi|41056963|ref|NP_957583.1| YdeA [Escherichia coli]
   • gi|5103191|dbj|BAA78827.1| 94% identical to gp:AF074613_85[hypothetical protein of plasmid pO157], 61% identical (1 gap) to 64 residues of 79 aa protein gp:ECAE000133_3[hypothetical protein of E. coli] [Plasmid R100]
6. • gi|89033311|gb|ABD59989.1|_5:75 hypothetical protein [Escherichia coli]
   • gi|50346328|ref|NP_052923.2| hypothetical protein R100p043 [Plasmid R100]
7. • gi|45758187|gb|AAS76399.1|_5:75 YkfF [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67]
   • gi|60115629|ref|YP_209420.1| YkfF [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67]
8. • gi|8918884|dbj|BAA97931.1|_7:77 yfjA [Plasmid F]
   • gi|9507774|ref|NP_061440.1| hypothetical protein Fpla063 [Plasmid F]
9. • gi|91213937|ref|YP_543923.1|_4:74 hypothetical protein YkfF [Escherichia coli UTI89]
   • gi|91075511|gb|ABE10392.1| hypothetical protein YkfF [Escherichia coli UTI89]
10. • gi|5702179|gb|AAD47188.1|_5:75 unknown; orf77 [Escherichia coli]
    • gi|75234993|ref|ZP_00719258.1| hypothetical protein EcolE1_01003133 [Escherichia coli E110019]
11. • gi|75230630|ref|ZP_00717105.1|_5:75 hypothetical protein EcolB7_01001278 [Escherichia coli B7A]
12. • gi|57903248|gb|AAW58878.1|_22:92 YkfF [Escherichia coli]
    • gi|58000348|ref|YP_190158.1| YkfF [Escherichia coli]
13. • gi|41223299|ref|NP_958724.1|_5:75 hypothetical protein ECp054 [Escherichia coli O157:H7 str. Sakai]
14. • gi|75512277|ref|ZP_00734839.1|_6:75 hypothetical protein Ecol5_01003544 [Escherichia coli 53638]
15. • gi|3822199|gb|AAC70153.1|_14:84 hypothetical protein [Escherichia coli O157:H7]
    • gi|75994531|ref|YP_325645.1| hypothetical protein L7085 [Escherichia coli O157:H7 EDL933]
16. • gi|91206338|ref|YP_538692.1|_7:77 hypothetical protein UTI89_P093 [Escherichia coli UTI89]
    • gi|91075789|gb|ABE10669.1| hypothetical protein UTI89_P093 [Escherichia coli UTI89]
17. • gi|75238464|ref|ZP_00722461.1|_5:75 hypothetical protein EcolF_01003511 [Escherichia coli F11]
18. • gi|73476837|gb|AAZ76452.1|_5:75 hypothetical protein LH0085 [Escherichia coli]
    • gi|73853253|ref|YP_308749.1| hypothetical protein LH0085 [Escherichia coli]
19. • gi|110345587|gb|ABG71824.1|_4:74 putative cytoplasmic protein [Escherichia coli 536]
    • gi|26110819|gb|AAN83003.1| Hypothetical protein ykfF [Escherichia coli CFT073]
    • gi|26250389|ref|NP_756429.1| Hypothetical protein ykfF [Escherichia coli CFT073]
    • gi|24528054|emb|CAD33784.1| hypothetical protein [Escherichia coli]
    • gi|70608383|gb|AAZ04455.1| conserved hypothetical protein [Escherichia coli]
20. • gi|75234748|ref|ZP_00719058.1|_5:75 hypothetical protein EcolE1_01003386 [Escherichia coli E110019]
21. • gi|83586571|ref|ZP_00925204.1|_6:76 hypothetical protein Ecol1_01002225 [Escherichia coli 101-1]
22. • gi|26111397|gb|AAN83579.1|_4:74 Hypothetical protein ykfF [Escherichia coli CFT073]
    • gi|26250965|ref|NP_757005.1| Hypothetical protein ykfF [Escherichia coli CFT073]
23. • gi|75208230|ref|ZP_00708597.1|_6:76 hypothetical protein EcolB_01004504 [Escherichia coli B171]
24. • gi|16128234|ref|NP_414783.1|_3:78 CP4-6 prophage; predicted protein [Escherichia coli K12]
    • gi|1786443|gb|AAC73352.1| CP4-6 prophage; predicted protein [Escherichia coli K12]
    • gi|89107122|ref|AP_000902.1| hypothetical protein [Escherichia coli W3110]
    • gi|3025208|sp|P75677|YKFF_ECOLI Hypothetical protein ykfF
    • gi|85674398|dbj|BAA77918.2| hypothetical protein [Escherichia coli W3110]
25. • gi|75226917|ref|ZP_00713803.1|_5:75 hypothetical protein EcolB7_01004569 [Escherichia coli B7A]
26. • gi|110344756|gb|ABG70993.1|_4:74 hypothetical protein YkfF [Escherichia coli 536]
27. • gi|47154999|emb|CAE85198.1|_16:86 YkfF protein [Escherichia coli]
28. • gi|71559064|ref|YP_271791.1|_3:72 hypothetical protein pOU1113_67 [Salmonella enterica]
    • gi|68166363|gb|AAY88124.1| hypothetical protein [Salmonella enterica]
29. • gi|16445257|gb|AAL23475.1|_9:77 putative cytoplasmic protein [Salmonella typhimurium LT2]
    • gi|17233436|ref|NP_490555.1| putative cytoplasmic protein [Salmonella typhimurium LT2]
30. • gi|26106581|gb|AAN78767.1|_4:73 Hypothetical protein ykfF [Escherichia coli CFT073]
    • gi|26246184|ref|NP_752223.1| Hypothetical protein ykfF [Escherichia coli CFT073]
31. • gi|31795419|ref|NP_857872.1|_6:73 hypothetical protein Y1091 [Yersinia pestis KIM]
    • gi|45357335|gb|AAS58729.1| hypothetical protein pMT098 [Yersinia pestis biovar Medievalis str. 91001]
    • gi|108793825|ref|YP_636672.1| hypothetical protein YPN_MT0093 [Yersinia pestis Nepal516]
    • gi|108793621|ref|YP_636780.1| hypothetical protein YPA_MT0089 [Yersinia pestis Antiqua]
    • gi|108782168|gb|ABG16225.1| hypothetical protein YPA_MT0089 [Yersinia pestis Antiqua]
    • gi|108777889|gb|ABG20407.1| hypothetical protein YPN_MT0093 [Yersinia pestis Nepal516]
    • gi|3883089|gb|AAC82749.1| unknown [Yersinia pestis KIM]
    • gi|2996363|gb|AAC13243.1| unknown [Yersinia pestis KIM]
    • gi|31795259|ref|NP_857714.1| hypothetical protein YPKMT101 [Yersinia pestis KIM]
    • gi|5834744|emb|CAB55242.1| hypothetical protein YPMT1.60c [Yersinia pestis CO92]
    • gi|52538124|emb|CAG27550.1| hypothetical protein [Yersinia pestis]
    • gi|52788195|ref|YP_094023.1| hypothetical protein pG8786_144 [Yersinia pestis]
    • gi|16082850|ref|NP_395404.1| hypothetical protein YPMT1.60c [Yersinia pestis CO92]
    • gi|89103272|ref|ZP_01175857.1| hypothetical protein Ypesb_01002735 [Yersinia pestis biovar Orientalis str. IP275]
    • gi|45478682|ref|NP_995538.1| hypothetical protein pMT098 [Yersinia pestis biovar Medievalis str. 91001]
32. • gi|14195539|sp|P58095|YPJI_ECOLI_16:90 Hypothetical protein ypjI
33. • gi|57434425|emb|CAI43842.1|_5:74 hypothetical protein [Escherichia coli]
    • gi|57545662|gb|AAW51753.1| Aec70 [Escherichia coli]
34. • gi|26109909|gb|AAN82114.1|_5:74 Hypothetical protein ykfF [Escherichia coli CFT073]
    • gi|26249501|ref|NP_755541.1| Hypothetical protein ykfF [Escherichia coli CFT073]
35. • gi|18265878|gb|AAL67351.1|_4:69 intergenic-region protein [Escherichia coli]
36. • gi|75189020|ref|ZP_00702287.1|_16:64 hypothetical protein EcolE_01002298 [Escherichia coli E24377A]
37. • gi|75259064|ref|ZP_00730432.1|_4:52 hypothetical protein EcolE2_01001328 [Escherichia coli E22]
    • gi|75212146|ref|ZP_00712186.1| hypothetical protein EcolB_01000748 [Escherichia coli B171]
    • gi|75208370|ref|ZP_00708708.1| hypothetical protein EcolB_01004372 [Escherichia coli B171]
38. • gi|16505971|emb|CAD09857.1|_8:75 hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi str. CT18]
    • gi|18466655|ref|NP_569463.1| hypothetical protein HCM1.279bc [Salmonella enterica subsp. enterica serovar Typhi str. CT18]
    • gi|10957300|ref|NP_058324.1| hypothetical protein [Salmonella typhi]
    • gi|7800353|gb|AAF69949.1| orf; hypothetical protein [Salmonella typhi]

              10        20        30         40           50        60 
              |         |         |          |            |         | 
   1 MTQSVLLPPGPFTRRQAQAVTTTYSNITLED.DQGSHFRLVVRD...TEGRMVWRAWNFEPDAGE
   2 FRILQGLPDGPFTRKHAEAVAAQYRNVFIED.DHGEHFRLVVRN...-NGTMVWRTWNFEDGAGY
   3 FRILQGLPDGPFTRKQAEAVAAQYRNVFIED.DQGTHFRLVVRQ...-DGTLIWRSWNFEDCAGY
   4 FRILQGLPDGPFTRKQAEAVAAQYRNVFIED.DQGTHFRLVVRQ...-DGTLIWRSWNFEDCAGY
   5 FRILQGLPDGPFTRKQAEAVAAQYRNVFIED.DHGEQFRLVVRN...-NGTMVWRTWNFEDGAGY
   6 FRILQGLPDGPFTRKQAEAVAAQYRNVFIED.DHGEQFRLVVRN...-NGTMVWRTWNFEDGAGY
   7 FRILQGLPDGSFTREQAEAVAAQYRNVFIED.DQGTHFRLVVRQ...-DGTLIWRSWNFEDCAGY
   8 FRILQGLPDGPFTRKHAEAVAAQYRNVFIED.DHGEQFRLVVRN...-NGAMVWRTWNFEDGAGY
   9 -CHPVLLPEGPFSREQAVAVTTAYRNVLIED.DQGTHFRLVIRN...AGGQLRWRCWNFEPDAGK
  10 FRILQGLPDGPFTRKHAEAVAAQYRNVFIED.DHGEQFRLVVRN...-NGAMVWRTWNFEDGAGY
  11 FRILQGLPDGSFTREQAEAVAAQYRNVFIED.DQGTHFRLVVRN...NNG-LVWRTWNFEDGAGY
  12 FRILQGLPDGSFTREQAEAVAVQYRNVFIED.DHGEQFRLVVRN...-NGAMVWRTWNFEDGAGY
  13 FRILQGLPDGPFTRKHAEAVAAQYRNVFIEN.DHGEQFRLVVRN...-NGAMVWRTWNFEDGAGY
  14 -RIFQGLPDGSFTREQAEAVAAQYRNVFIED.DQGTHFRLVVRQ...-DGTLIWRSWNFEDCAGY
  15 FRILQGLPDGPFTRKHAEAVAAQYRNVFIEN.DHGEQFRLVVRN...-NGAMVWRTWNFEDGAGY
  16 FRILQGLPDGSFTREQAEAVAAQYRNVFIED.DQGTHFRLVVRN...NSG-LVWRTWNFEDGAGY
  17 FRILQGLPDGSFTREQAEAVAAQYRNVFIED.DQGTHFRLVVRN...NSG-LVWRTWNFEDGAGY
  18 FRILQGLPDGSFTREQAEAVAAQYRNVFIED.EQGTHFRLVVRN...NSG-LVWRTWNFEDGAGY
  19 -CHPVLLPEGPFSREQAVAVTTAYRNVLIED.DQGTHFRLVIRN...AEGQLRWRCWNFEPDAGK
  20 FRILQGLPDGPFTRKHAEAVAAQYRNVFIED.DHGEQFRLVVRN...-NETMVWRTWNFEDGAGY
  21 -RIFQGLPDGSFTREQAEAVAAQYRNVFIED.DQGTHFRLVVRQ...-DGTLIWRSWNFEDCAGY
  22 -CHPVLLPEGPFSREQAMAVTTAYRNVLIED.DQGTHFRLVIHN...AEGQLRWRCWNFEPDAGK
  23 -RIFQGLPDGSFTREQAEAVAAQYQNVFIED.DQGTHFRLVVRQ...-DGTLIWRSWNFEDCAGY
  24 --QSVLLPPGPFTRRQAQAVTTTYSNITLED.DQGSHFRLVVRD...TEGRMVWRAWNFEPDAGE
  25 FRILQGLPDGPFTRKQAEAVAAQYRNVFIGD.DHGEQFRLVVRN...-NGAMVWRTWNFEDGAGY
  26 -CTSRLLPEGPFSRNQALAVTTAYLNVLIED.DQGTHFRLVIRN...AEGQLRWRCWNFEPDAGK
  27 -CTSRLLPEGPFSRNQALAVTTAYLNVLIED.DQGTHFRLVIRN...AEGQLRWRCWNFEPDAGK
  28 --PLKSLPDGTFTHEQAEAVAAQYQNVAIED.DQGTHLRLVVRK...-DGEMVWRGWNFEPGGEY
  29 ---LKSLPDGTFTHEQAEAVAAQYQNVAIED.DQGTHLRLVVRK...-DGEMVWRGWNFEPGGEY
  30 -CTLLLFSEAPFLREQEVAVITAYRNVFIQD.DPGMHFRWVIRN...AEGQRRWRCRNSEPDAGK
  31 ----AVLPDDTFTREQAEVVAAQYTNVAIED.DQGAHFRLVVRQ...-NGEMVWRTWNFEPGGTY
  32 ----GLPQWASADCVAGPLVSAGITDINIED.DQGIHVRLIVRD...AEGRMVWRAWNFEPDAGE
  33 --TEYVLAEGSFSYGQAVAVITAYRNVFIQD.DPGMHFRRVIRN...AEGQRRWRCRNSEPDAGK
  34 --TEYVLAEGSFSYGQAVAVITAYRNVFIQD.DPGMHFRRVIRN...AEGQRRWRCRNSEADAGK
  35 -CTLLLFSEAPFLREQEVAVITAYRNVFIQD.DPGMHFRWVIRN...AEGQRRWRCRNSPLILNP
  36 -CTSRLLPEGPFSREQAVAVKTAYRNVFTED.DQGTYSRLVIRN...AEGQLRW-----------
  37 -CTSRLLPEGPFSREQAVAVKTAYRNVFTED.DQGTYSRLVIRN...AEGQLRW-----------
  38 --------ESPVTLAQARTVAAGYQNVFIENlQPAGHFQIVIRDhrdHDSQLVWRNWNYESGAND


             70         
             |         
   1 GLNRYIRTSGIRTDTATR
   2 WMNHAIRDFGI-------
   3 WMNRYIRDFGI-------
   4 WMNRYIRDFGI-------
   5 WMNHVIRDFGI-------
   6 WMNHVIRDFGI-------
   7 WMNQYIRDFGI-------
   8 WMNHVIRDFGI-------
   9 QLNSYLASEGI-------
  10 WMNHVIRDFGI-------
  11 WMNHVIRNFGI-------
  12 WMNHVIRDFGI-------
  13 WMNHVIRDFGI-------
  14 WMNRYIRDFGI-------
  15 WMNHVIRDFGI-------
  16 WMNHVIRNFGI-------
  17 WMNHVIRNFGI-------
  18 WMNHVIRDFGI-------
  19 QLNSYLASEGI-------
  20 WMNHVIRDFGI-------
  21 WMNRYIRDFGIR------
  22 QLNPYLASEGI-------
  23 WMNQYIRDFGIR------
  24 GLNRYIRTSGIRTDTAT-
  25 WMNRYIRDFGI-------
  26 QLNPYLASEGI-------
  27 QLNPYLASEGI-------
  28 WLNRCIESHGIR------
  29 WLNRCIESHGIR------
  30 VLNTRLASDG--------
  31 WLNRYIADYGIR------
  32 GFNRYIHRSGIRTDTFPR
  33 VLNTRLASDGL-------
  34 QLNAWLASGGL-------
  35 MPERCL------------
  36 ------------------
  37 ------------------
  38 ALNSYLQSHGL-------