# List of top-scoring protein chains for t06-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2f4qA 346 6.07e-02 1lktA 104 5.43e-01 1lktA b.90.1.1 28398 2c3vA 102 6.36e-01 1zkdA 387 7.10e-01 1tp6A 128 1.16e+00 d.17.4.12 107184 2a2pA 129 1.53e+00 2fh5A 185 1.64e+00 1yaxA 153 1.80e+00 1yx1A 264 1.89e+00 1m93C 41 1.92e+00 3nul 130 2.07e+00 3nul d.110.1.1 40891 1cqyA 99 2.49e+00 1b9zA b.3.1.1 22527 2fhxA 246 2.50e+00 1tqzA 133 2.95e+00 1ui0A 205 3.32e+00 c.18.1.2 99411 1qhoA 686 3.71e+00 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21844,22513,27751,28738 2gcc 70 3.98e+00 2gcc d.10.1.2 37484 1qmvA 197 4.70e+00 1qq2A c.47.1.10 33066 2cr5A 109 5.33e+00 1vq2A 193 5.46e+00 1ijqA 316 6.51e+00 1ijqA b.68.5.1,g.3.11.1 62506,62507 1dcjA 81 6.74e+00 1dcjA d.68.3.3 59115 1h6hA 143 6.81e+00 d.189.1.1 65681 1qx4A 274 7.39e+00 b.43.4.2,c.25.1.1 104624,104625 1pufB 73 7.79e+00 a.4.1.1 95132 1p2hA 571 8.39e+00 a.138.1.3,c.3.1.4,d.168.1.1 93930,93931,93932 1cdq 77 8.49e+00 1cds g.7.1.3 44459 1vemA 516 8.49e+00 1qb5D 99 8.67e+00 b.40.2.1 88357 1a8q 274 8.94e+00 1brt c.69.1.12 34702 1h4rA 314 9.28e+00 a.11.2.1,b.55.1.5,d.15.1.4 65616,65617,65618 1v74A 107 9.57e+00 d.243.1.1 100442 1bywA 110 1.02e+01 1bywA d.110.3.6 40912 1qhdA 398 1.11e+01 1qhdA a.115.1.2,b.19.1.1 63324,63325 1kllA 130 1.20e+01 d.32.1.2 72720 1vcdA 126 1.24e+01 1xxqA 161 1.24e+01 1w4tA 299 1.29e+01 1p57A 114 1.30e+01 d.170.1.2 94125 1vjfA 180 1.32e+01 d.116.1.1 100809 1lwdA 413 1.40e+01 c.77.1.1 78265 1r1qA 100 1.41e+01 d.93.1.1 104763 3ezmA 101 1.43e+01 3ezmA b.89.1.1 28395 1p6oA 161 1.45e+01 c.97.1.2 94185 1txkA 498 1.45e+01 b.1.18.2,b.30.5.9 107425,107426 1vetA 124 1.45e+01 d.110.7.1 108553 1nrlA 316 1.47e+01 a.123.1.1 92091 2c6cA 707 1.47e+01 2b59B 172 1.57e+01 1tljA 213 1.59e+01 d.282.1.1 107126 2cvzA 289 1.63e+01 1huxA 270 1.71e+01 1huxA c.55.1.5 61278 1kb0A 677 1.73e+01 a.3.1.6,b.70.1.1 68378,68379 1hw7A 255 1.74e+01 1i7fA d.193.1.1 61297 1xksA 450 1.76e+01 1ffyA 917 1.78e+01 1qu2A a.27.1.1,b.51.1.1,c.26.1.1 16926,26891,31593 1wm3A 72 1.80e+01 1vr9A 213 1.81e+01 2go8A 122 1.89e+01 1x6mA 196 1.92e+01 2ap1A 327 1.94e+01 1y88A 199 1.99e+01 1xfsA 178 2.00e+01 d.129.3.5 109589 1iwdA 215 2.00e+01 d.3.1.1 83756 1zu0A 529 2.04e+01 1itbB 315 2.05e+01 1itbB b.1.1.4,b.1.1.4,b.1.1.4 21720,21721,21722 1umkA 275 2.11e+01 1xkiA 162 2.17e+01 1vqoS 85 2.21e+01 2ghrA 302 2.28e+01 1voqa 90 2.32e+01 1ry9A 145 2.35e+01 d.198.1.1 98094 1vkiA 181 2.38e+01 d.116.1.1 108664 1lgpA 116 2.45e+01 b.26.1.2 73890 1z2mA 155 2.50e+01 1f00I 282 2.56e+01 1f00I b.1.14.1,b.1.14.1,d.169.1.3 22368,22369,42439 1w9hA 427 2.56e+01 1sqeA 109 2.58e+01 d.58.4.5 105908 1xc3A 302 2.60e+01 1e19A 314 2.64e+01 1b7bA c.73.1.1 34967 1wrvA 308 2.66e+01 1l6rA 227 2.67e+01 c.108.1.10 77768 1gt1A 159 2.73e+01 b.60.1.1 90515 1u14A 172 2.74e+01 c.51.4.3 107579 1qauA 112 2.74e+01 1qauA b.36.1.1 24779 1uwzA 136 2.79e+01 c.97.1.1 108081 2cfuA 658 2.79e+01 1cv8 174 2.89e+01 1cv8 d.3.1.1 37089 2cl1A 279 3.01e+01 1wba 175 3.04e+01 1wba b.42.4.1 25591 2aa4A 289 3.06e+01 1ryaA 160 3.06e+01 d.113.1.5 105122 2evrA 246 3.09e+01 1b8aA 438 3.10e+01 1b8aA b.40.4.1,d.104.1.1 25244,40765 2a2lA 145 3.12e+01 1vecA 206 3.16e+01 c.37.1.19 100575 1pjxA 314 3.16e+01 b.68.6.1 104167 1vjvA 415 3.16e+01 d.3.1.9 108632 1r9fA 136 3.23e+01 d.255.1.1 97257 2crvA 120 3.24e+01 2fikA 287 3.30e+01 1qg7A 67 3.35e+01 1a15A d.9.1.1 37449 1ne9A 335 3.36e+01 d.108.1.4,d.108.1.4 91839,91840 1ttzA 87 3.43e+01 c.47.1.1 107309 1c96A 753 3.44e+01 1amj c.8.2.1,c.83.1.1 30727,35403 1w6sA 599 3.48e+01 1mtpB 43 3.50e+01 1o7nA 449 3.55e+01 b.33.1.2,d.129.3.3 81162,81163 1te7A 103 3.56e+01 1vbvA 105 3.69e+01 2gjdA 157 3.79e+01 1sz2A 332 3.82e+01 1rewC 135 3.85e+01 g.7.1.3 97336 2cu3A 64 3.87e+01 1msc 129 3.87e+01 1msc d.85.1.1 40039 2bkrA 212 3.91e+01 1ifqA 138 3.93e+01 1ifqA d.110.4.1 62350 2he7A 283 3.96e+01 1kaeA 434 3.97e+01 c.82.1.2 72247 1c44A 123 4.00e+01 1qndA d.106.1.1 40795 1pm1X 180 4.02e+01 b.60.1.1 104189 2b7kA 200 4.13e+01 1fjgP 88 4.15e+01 1emwA d.27.1.1 38444 2c4xA 260 4.18e+01 1y9wA 140 4.21e+01 1yb3A 175 4.24e+01 1r77A 103 4.26e+01 1zo2A 129 4.27e+01 1xvqA 175 4.32e+01 2a8eA 220 4.34e+01 2cw8A 537 4.38e+01 1zndA 174 4.39e+01 1z0wA 207 4.45e+01 1cuk 203 4.47e+01 1hjp a.5.1.1,a.60.2.1,b.40.4.2 16273,17946,25265 1cz6A 25 4.58e+01 j.3.1.3 46072 1bco 327 4.62e+01 1bco b.48.1.1,c.55.3.3 26431,33676 1v30A 124 4.64e+01 1n9lA 109 4.67e+01 d.110.3.6 85468 1vggA 161 4.68e+01 1xqaA 113 4.72e+01 1sluA 142 4.73e+01 1sluA b.16.1.1 23685 1j5pA 253 4.74e+01 d.81.1.3,c.2.1.3 71577,83092 1ny1A 240 4.76e+01 c.6.2.3 86395 1q7fA 286 4.80e+01 b.68.9.1 96036 2gfoA 396 4.82e+01 1x54A 434 4.97e+01 1ojrA 274 5.04e+01 c.74.1.1 93147 1oxxK 353 5.05e+01 b.40.6.3,c.37.1.12 93715,93716 1j79A 347 5.06e+01 1j79A c.1.9.4 62675 1qy1A 174 5.06e+01 b.60.1.1 96568 1o9yA 84 5.08e+01 b.139.1.1 92692 1l2tA 235 5.10e+01 c.37.1.12 73514 2ghpA 292 5.14e+01 1g5aA 628 5.14e+01 b.71.1.1,c.1.8.1 65152,65153 2fq9A 225 5.21e+01 1xkzA 255 5.33e+01 1am2 199 5.33e+01 1am2 b.86.1.2 28381 1jyrA 96 5.36e+01 d.93.1.1 71969 1kicA 339 5.39e+01 c.70.1.1 72510 1un3A 123 5.41e+01 d.5.1.1 99646 1op3H 225 5.41e+01 b.1.1.1,b.1.1.2 87208,87209 1dmhA 311 5.42e+01 1dmhA b.3.6.1 22633 1g8kA 825 5.50e+01 1g8jA b.52.2.2,c.81.1.1 26920,35328 1p3dA 475 5.51e+01 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 1w41A 101 5.52e+01 1bquA 215 5.55e+01 1bquA b.1.2.1,b.1.2.1 22066,22067 1dpjA 329 5.57e+01 1smrA b.50.1.2 26828 1x0rA 249 5.61e+01 1s68A 249 5.71e+01 d.142.2.4 98591 1x6oA 174 5.74e+01 b.34.5.2,b.40.4.5 109493,109494 2b3yA 888 5.76e+01 1y5oA 115 5.78e+01 1gmuA 143 5.79e+01 b.107.1.1,d.58.38.1 65335,65336 1ugiA 84 5.80e+01 1ugiA d.17.5.1 38125 1ln1A 214 5.82e+01 d.129.3.2 74038 2basA 431 5.86e+01 16pk 415 5.86e+01 16pk c.86.1.1 35454 1q0qA 406 5.89e+01 a.69.3.1,c.2.1.3,d.81.1.3 104464,104465,104466 2bgiA 272 5.90e+01 2dchX 216 5.97e+01 1jofA 365 5.99e+01 b.69.10.1 71775 2arcA 164 6.03e+01 2arcA b.82.4.1 28148 1hw5A 210 6.03e+01 2cgpA a.4.5.4,b.82.3.2 16098,28137 1l7mA 211 6.08e+01 c.108.1.4 73664 1qveA 126 6.13e+01 d.24.1.1 104594 1e0bA 68 6.19e+01 1e0bA b.34.13.2 37476 1z8gA 372 6.24e+01 1qjpA 171 6.37e+01 1bxwA f.4.1.1 43742 1gsa 316 6.41e+01 1gsa c.30.1.3,d.142.1.1 31718,41477 2c7xA 436 6.52e+01 1tyv 542 6.60e+01 1tyv b.80.1.6 28038 1yp2A 451 6.63e+01 1b0uA 262 6.67e+01 1b0uA c.37.1.12 32370 1nofA 383 6.69e+01 b.71.1.2,c.1.8.3 92020,92021 2gaiA 633 6.74e+01 1jfmA 174 6.76e+01 d.19.1.1 66640 2fnjA 226 6.80e+01 1l0bA 229 6.93e+01 c.15.1.3,c.15.1.3 73391,73392 2cx5A 158 7.01e+01 1rypH 205 7.01e+01 d.153.1.4 41876 1k55A 246 7.02e+01 e.3.1.1 68156 1wdvA 152 7.07e+01 2fv7A 331 7.09e+01 1ttwA 138 7.17e+01 d.198.1.1 107308 1pj5A 830 7.20e+01 b.44.2.1,c.3.1.2,d.16.1.5,d.250.1.1 94742,94743,94744,94745 2a6aA 218 7.20e+01 2c4nA 250 7.29e+01 2f96A 224 7.33e+01 2a25A 193 7.39e+01 1hw6A 278 7.44e+01 1frb c.1.7.1 61296 2grrB 170 7.46e+01 2db9A 149 7.48e+01 1q1uA 144 7.57e+01 b.42.1.1 95608 1pylA 97 7.67e+01 d.1.1.2 104391 1ru3A 732 7.68e+01 e.26.1.3 97835 1e2wA 251 7.75e+01 1hcz b.2.6.1,b.84.2.2 22466,28252 1f2tB 148 7.77e+01 1f2tB 1n13B 113 7.81e+01 1a8y 367 7.94e+01 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1yqtA 538 7.95e+01 1ccwB 483 7.96e+01 1cb7B c.1.19.2 29646 1l0wA 580 7.98e+01 b.40.4.1,d.74.4.1,d.104.1.1 73426,73427,73428 1uasA 362 8.00e+01 b.71.1.1,c.1.8.1 88388,88389 1iow 306 8.03e+01 1iow c.30.1.2,d.142.1.1 31713,41481 2cw9A 194 8.13e+01 2gu3A 136 8.13e+01 1sur 215 8.14e+01 1sur c.26.2.2 31620 1pwaA 162 8.15e+01 b.42.1.1 95211 1bu6O 501 8.28e+01 1glcG c.55.1.4,c.55.1.4 33499,33500 1gqzA 274 8.44e+01 d.21.1.1,d.21.1.1 83311,83312 1m9xC 146 8.45e+01 a.73.1.1 84907 1qqrA 138 8.48e+01 1bmlC d.15.5.1 37721 1ykdA 398 8.49e+01 1wgzA 510 8.54e+01 1uhvA 500 8.54e+01 b.71.1.2,c.1.8.3 99402,99403 1r6lA 239 8.55e+01 d.14.1.4,d.101.1.1 97153,97154 2bynA 227 8.59e+01 1ri9A 102 8.61e+01 b.34.2.1 97506 1elvA 333 8.70e+01 5ptp b.47.1.2,g.18.1.1 59454,59455 1szoA 257 8.77e+01 c.14.1.3 106164 1vgmA 378 8.79e+01 1uliA 460 8.80e+01 b.33.1.2,d.129.3.3 107921,107922 1iujA 106 8.83e+01 d.58.4.5 90701 1jmxA 494 8.84e+01 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 66901,66902,66903,66904,66905 1jtdB 273 8.84e+01 b.69.5.2 67265 1i07A 60 8.87e+01 1aojA b.34.2.1 61477 2gclA 261 8.89e+01 1pot 325 8.93e+01 1pot c.94.1.1 35807 1rmg 422 8.95e+01 1rmg b.80.1.3 28029