# List of top-scoring protein chains for t06-100-30-o_notor2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2f4qA 346 2.03e-01 1ffyA 917 5.82e-01 1qu2A a.27.1.1,b.51.1.1,c.26.1.1 16926,26891,31593 2c3vA 102 6.43e-01 1qhoA 686 1.31e+00 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21844,22513,27751,28738 1tp6A 128 2.35e+00 d.17.4.12 107184 2fh5A 185 2.60e+00 1iscA 192 2.95e+00 1avmA a.2.11.1,d.44.1.1 15733,38726 1qx4A 274 3.20e+00 b.43.4.2,c.25.1.1 104624,104625 1e19A 314 3.38e+00 1b7bA c.73.1.1 34967 1lktA 104 3.59e+00 1lktA b.90.1.1 28398 1gpeA 587 3.98e+00 1gpeA c.3.1.2,d.16.1.1 30387,37951 1z0wA 207 4.07e+00 1qjpA 171 4.16e+00 1bxwA f.4.1.1 43742 1zkdA 387 4.25e+00 3ezmA 101 4.96e+00 3ezmA b.89.1.1 28395 1xfsA 178 5.16e+00 d.129.3.5 109589 1u58A 253 5.27e+00 1m65A 245 5.58e+00 c.6.3.1 84847 1y14B 171 6.22e+00 2cu3A 64 6.37e+00 1kllA 130 6.40e+00 d.32.1.2 72720 16pk 415 7.96e+00 16pk c.86.1.1 35454 2a25A 193 8.14e+00 1b9wA 89 8.31e+00 1b9wA g.3.11.4,g.3.11.4 44334,44335 1cqyA 99 8.53e+00 1b9zA b.3.1.1 22527 1nrlA 316 8.81e+00 a.123.1.1 92091 1bywA 110 9.07e+00 1bywA d.110.3.6 40912 1l6sA 323 9.67e+00 c.1.10.3 73627 1iow 306 9.80e+00 1iow c.30.1.2,d.142.1.1 31713,41481 1pufB 73 9.92e+00 a.4.1.1 95132 1yx1A 264 1.01e+01 1pz7A 204 1.02e+01 b.29.1.4 95405 1qauA 112 1.11e+01 1qauA b.36.1.1 24779 1ro5A 201 1.14e+01 d.108.1.3 105023 1cr5A 189 1.14e+01 1cr5A b.52.2.3,d.31.1.1 26931,38465 1m93C 41 1.18e+01 1ui0A 205 1.23e+01 c.18.1.2 99411 1th7A 81 1.25e+01 1vjfA 180 1.26e+01 d.116.1.1 100809 1yuzA 202 1.33e+01 1lkkA 105 1.33e+01 1lckA d.93.1.1 40412 1huxA 270 1.34e+01 1huxA c.55.1.5 61278 2gaiA 633 1.35e+01 1umkA 275 1.40e+01 1vr9A 213 1.41e+01 1v74A 107 1.42e+01 d.243.1.1 100442 1yaxA 153 1.47e+01 2bjbA 462 1.47e+01 2go8A 122 1.50e+01 1kzfA 230 1.53e+01 d.108.1.3 73354 1mgqA 83 1.55e+01 b.38.1.1 79099 1n9lA 109 1.59e+01 d.110.3.6 85468 1ttzA 87 1.65e+01 c.47.1.1 107309 1m1zA 513 1.66e+01 c.26.2.1,d.153.1.1 78457,78458 1vemA 516 1.78e+01 1d8hA 311 1.78e+01 1d8iA d.63.1.1 39544 1te7A 103 1.80e+01 2bt9A 90 1.82e+01 1jb7B 260 1.82e+01 1otcB b.40.4.3 62839 1pylA 97 1.86e+01 d.1.1.2 104391 1s6xA 34 1.88e+01 2a2pA 129 1.88e+01 1ijqA 316 1.90e+01 1ijqA b.68.5.1,g.3.11.1 62506,62507 2ge3A 170 1.97e+01 1txkA 498 2.02e+01 b.1.18.2,b.30.5.9 107425,107426 1am2 199 2.03e+01 1am2 b.86.1.2 28381 1ny1A 240 2.11e+01 c.6.2.3 86395 1p2hA 571 2.12e+01 a.138.1.3,c.3.1.4,d.168.1.1 93930,93931,93932 1uesA 191 2.27e+01 a.2.11.1,d.44.1.1 107798,107799 1dcjA 81 2.27e+01 1dcjA d.68.3.3 59115 1w4tA 299 2.28e+01 1vkcA 158 2.30e+01 2gwnA 452 2.30e+01 1uhvA 500 2.31e+01 b.71.1.2,c.1.8.3 99402,99403 2fafA 608 2.32e+01 1vq2A 193 2.33e+01 1r53A 382 2.37e+01 d.258.1.1 97063 1xqaA 113 2.38e+01 1cv8 174 2.41e+01 1cv8 d.3.1.1 37089 2bgiA 272 2.46e+01 2bjfA 329 2.50e+01 1bhtA 176 2.53e+01 1bhtA g.10.1.1,g.14.1.1 44603,44663 1rkqA 282 2.65e+01 c.108.1.10 97621 1ktbA 405 2.66e+01 b.71.1.1,c.1.8.1 72960,72961 2arcA 164 2.66e+01 2arcA b.82.4.1 28148 2fa8A 105 2.70e+01 1i88A 389 2.73e+01 c.95.1.2,c.95.1.2 66070,66071 1uwzA 136 2.85e+01 c.97.1.1 108081 1u14A 172 2.92e+01 c.51.4.3 107579 1xkgA 312 2.92e+01 2ciaA 102 2.93e+01 1um5H 217 2.96e+01 1lwdA 413 3.04e+01 c.77.1.1 78265 1q7fA 286 3.07e+01 b.68.9.1 96036 1xvsA 126 3.09e+01 1zo2A 129 3.09e+01 1xkiA 162 3.09e+01 1vggA 161 3.14e+01 1s4iA 175 3.14e+01 1vjvA 415 3.15e+01 d.3.1.9 108632 1vcdA 126 3.16e+01 1kjvA 284 3.18e+01 b.1.1.2,d.19.1.1 77421,77422 1v7bA 185 3.22e+01 1z2mA 155 3.24e+01 1woyA 500 3.27e+01 1k38A 254 3.35e+01 e.3.1.1 84303 1hxrA 115 3.36e+01 1fwqA b.88.1.1 28392 1lniA 96 3.36e+01 d.1.1.2 74046 1bquA 215 3.46e+01 1bquA b.1.2.1,b.1.2.1 22066,22067 1wvqA 167 3.47e+01 1uasA 362 3.47e+01 b.71.1.1,c.1.8.1 88388,88389 1fjgP 88 3.48e+01 1emwA d.27.1.1 38444 1npsA 88 3.51e+01 1prs b.11.1.1 23622 1ri9A 102 3.56e+01 b.34.2.1 97506 1i3dA 146 3.61e+01 a.1.1.2 61587 1pjxA 314 3.62e+01 b.68.6.1 104167 1o7iA 119 3.65e+01 b.40.4.3 86642 2dchX 216 3.66e+01 2ci9A 102 3.75e+01 1jmxA 494 3.76e+01 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 66901,66902,66903,66904,66905 1csn 298 3.89e+01 1csn d.144.1.7 41664 1pvmA 184 3.89e+01 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 1azsA 220 3.96e+01 1azsA d.58.29.1 39416 1y9wA 140 3.98e+01 1ryaA 160 3.99e+01 d.113.1.5 105122 1hd2A 161 4.02e+01 c.47.1.10 60962 1y88A 199 4.04e+01 1m4iA 181 4.05e+01 d.108.1.1 74457 1iwdA 215 4.11e+01 d.3.1.1 83756 1jyeA 349 4.11e+01 c.93.1.1 67455 1h4rA 314 4.18e+01 a.11.2.1,b.55.1.5,d.15.1.4 65616,65617,65618 1b63A 333 4.23e+01 1b63A d.14.1.3,d.122.1.2 37566,41107 2c2aA 258 4.24e+01 1uliA 460 4.27e+01 b.33.1.2,d.129.3.3 107921,107922 1s4nA 348 4.29e+01 c.68.1.16 98501 1v0jA 399 4.38e+01 2cwzA 141 4.38e+01 1ospO 257 4.52e+01 1ospO b.76.1.1 27971 2cr5A 109 4.59e+01 1fnd 314 4.65e+01 1fnc b.43.4.2,c.25.1.1 25626,31516 1z47A 355 4.66e+01 1w9hA 427 4.69e+01 1ofzA 312 4.72e+01 b.68.8.1 86978 1fp1D 372 4.80e+01 1fpqA a.4.5.29,c.66.1.12 59939,59940 1pszA 303 4.85e+01 1toaA c.92.2.2 35600 1pcfA 66 4.86e+01 1pcfA d.18.1.1 38142 1bx1A 314 4.90e+01 1fnc b.43.4.2,c.25.1.1 25629,31519 1b77A 228 4.97e+01 1b77A d.131.1.2,d.131.1.2 41362,41363 1u07A 90 4.98e+01 2cw9A 194 4.98e+01 1z02A 446 5.06e+01 1vbvA 105 5.10e+01 2b5nA 323 5.19e+01 1xksA 450 5.27e+01 1i8fA 81 5.32e+01 1i8fA b.38.1.1 61959 1yfqA 342 5.32e+01 1kaeA 434 5.42e+01 c.82.1.2 72247 1ugjA 141 5.47e+01 b.41.1.3 107826 2cl1A 279 5.51e+01 1iuaA 83 5.53e+01 g.35.1.1 71438 1nofA 383 5.56e+01 b.71.1.2,c.1.8.3 92020,92021 1qexA 288 5.64e+01 1qexA b.32.1.1 24425 1x6oA 174 5.64e+01 b.34.5.2,b.40.4.5 109493,109494 2gdjA 264 5.68e+01 2h1qA 270 5.69e+01 2g9iA 249 5.75e+01 1h6hA 143 5.76e+01 d.189.1.1 65681 1qwlA 505 5.76e+01 e.5.1.1 96483 1h1yA 228 5.79e+01 c.1.2.2 76506 1qqp1 213 5.79e+01 1qqp1 1f39A 101 5.79e+01 1umuA b.87.1.1 28386 4tsvA 150 5.81e+01 2tnfA b.22.1.1 23860 1qmvA 197 5.82e+01 1qq2A c.47.1.10 33066 1tqxA 227 5.87e+01 1mngA 203 5.96e+01 1avmA a.2.11.1,d.44.1.1 15776,38701 1gtkA 313 6.03e+01 c.94.1.1,d.50.2.1 76346,76347 1vp4A 425 6.05e+01 1gw5S 142 6.06e+01 d.110.4.2 70633 2g6yA 217 6.10e+01 1k8kE 178 6.12e+01 a.148.1.1 68311 1epfA 191 6.12e+01 2ncm b.1.1.4,b.1.1.4 21694,21695 2cn3A 737 6.13e+01 1o2dA 371 6.13e+01 e.22.1.2 86591 1i07A 60 6.15e+01 1aojA b.34.2.1 61477 1lgpA 116 6.15e+01 b.26.1.2 73890 2sli 679 6.20e+01 2sli b.29.1.9,b.68.1.1 24274,27611 1r1qA 100 6.24e+01 d.93.1.1 104763 1tuhA 156 6.29e+01 d.17.4.11 107345 1vjlA 164 6.35e+01 d.257.1.1 100822 2fv7A 331 6.37e+01 2b6dA 345 6.40e+01 2gclA 261 6.45e+01 1aj2 282 6.46e+01 1aj2 c.1.21.1 29665 1g5aA 628 6.47e+01 b.71.1.1,c.1.8.1 65152,65153 1v04A 355 6.54e+01 b.68.6.2 100240 1c75A 71 6.58e+01 451c a.3.1.1 15796 1u1sA 82 6.59e+01 1oxdA 227 6.63e+01 d.22.1.1 93687 1m5q1 130 6.68e+01 1hkfA 122 6.70e+01 b.1.1.1 83553 1s68A 249 6.71e+01 d.142.2.4 98591 1gmyA 261 6.76e+01 d.3.1.1 76236 1szoA 257 6.79e+01 c.14.1.3 106164 2dbnA 461 6.82e+01 1pxvA 183 6.84e+01 d.3.1.1 95301 1e25A 282 6.84e+01 1e25A e.3.1.1 42731 1tkeA 224 6.86e+01 1f2tB 148 6.87e+01 1f2tB 1p80A 753 6.95e+01 c.23.16.3,e.5.1.1 94337,94338 1b8aA 438 7.01e+01 1b8aA b.40.4.1,d.104.1.1 25244,40765 1gt1A 159 7.02e+01 b.60.1.1 90515 1xebA 150 7.15e+01 1d3yA 301 7.15e+01 1d3yA e.12.1.1 43252 2aj6A 159 7.15e+01 1gy6A 127 7.16e+01 d.17.4.2 70736 2b59B 172 7.17e+01 1tksA 204 7.19e+01 d.115.1.2 107114 1u1tA 82 7.34e+01 1vqoS 85 7.38e+01 1ru3A 732 7.38e+01 e.26.1.3 97835 1xewY 172 7.39e+01 1ne8A 117 7.40e+01 b.34.6.2 80424 1xrkA 124 7.46e+01 1y4hA 188 7.55e+01 1omhA 293 7.69e+01 d.89.1.5 93348 1qhvA 195 7.72e+01 1qhvA b.21.1.1 23842 1g57A 217 7.73e+01 1g57A d.115.1.2 60253 1e9gA 286 7.76e+01 1wgjA b.40.5.1 59393 1i2uA 44 7.77e+01 g.3.7.4 65987 1msc 129 7.87e+01 1msc d.85.1.1 40039 1vbiA 344 7.95e+01 2jdxA 385 8.01e+01 1jdw d.126.1.2 41139 1wruA 379 8.06e+01 1nkiA 135 8.08e+01 d.32.1.2 91941 1dmhA 311 8.09e+01 1dmhA b.3.6.1 22633 2basA 431 8.10e+01 2fb1A 226 8.16e+01 1h9oA 112 8.16e+01 1qadA d.93.1.1 60837 2f9zC 159 8.16e+01 1jfmA 174 8.16e+01 d.19.1.1 66640 2he7A 283 8.17e+01 2aotA 292 8.19e+01 1r0uA 148 8.25e+01 b.60.1.5 96741 1gskA 513 8.26e+01 b.6.1.3,b.6.1.3,b.6.1.3 83314,83315,83316 2dg5B 190 8.27e+01 1ckaA 57 8.29e+01 1ckaA b.34.2.1 24459 1e3dA 266 8.38e+01 2frvA e.19.1.1 59188 1f00I 282 8.44e+01 1f00I b.1.14.1,b.1.14.1,d.169.1.3 22368,22369,42439 1rlhA 173 8.45e+01 d.256.1.1 97646 1vefA 395 8.52e+01 1hi9A 274 8.54e+01 1hi9A c.99.1.1 61063 1paz 123 8.64e+01 1bqk b.6.1.1 22878 2f5yA 91 8.64e+01 1wyuA 438 8.72e+01 2gwfB 134 8.73e+01 1zr6A 503 8.74e+01 1pswA 348 8.74e+01 c.87.1.7 88287 1h0hA 977 8.76e+01 b.52.2.2,c.81.1.1 76435,76436 1cdq 77 8.83e+01 1cds g.7.1.3 44459 1p6oA 161 8.84e+01 c.97.1.2 94185 2amhA 207 8.86e+01 1rkxA 357 8.95e+01 c.2.1.2 97631 1hw6A 278 8.95e+01 1frb c.1.7.1 61296 1vhnA 318 8.97e+01 c.1.4.1 100693 1vqoN 187 8.99e+01 2h3jA 75 8.99e+01