# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2f4qA 346 1.62e-01 1ffyA 917 3.89e-01 1qu2A a.27.1.1,b.51.1.1,c.26.1.1 16926,26891,31593 2c3vA 102 6.60e-01 1ui0A 205 1.03e+00 c.18.1.2 99411 1i3dA 146 1.21e+00 a.1.1.2 61587 1yaxA 153 1.30e+00 1lktA 104 1.35e+00 1lktA b.90.1.1 28398 2fafA 608 1.81e+00 1jsf 130 2.02e+00 3lzt d.2.1.2 36410 1jogA 146 2.63e+00 a.24.16.2 77142 1tp6A 128 2.86e+00 d.17.4.12 107184 3ezmA 101 3.02e+00 3ezmA b.89.1.1 28395 1yksA 440 3.36e+00 1vq2A 193 3.88e+00 1vr8A 142 4.36e+00 1izoA 417 5.32e+00 a.104.1.1 83851 1xewY 172 5.33e+00 1iscA 192 5.43e+00 1avmA a.2.11.1,d.44.1.1 15733,38726 1zbfA 142 6.32e+00 2cfuA 658 6.51e+00 1pufB 73 6.95e+00 a.4.1.1 95132 1lniA 96 7.52e+00 d.1.1.2 74046 1szoA 257 7.57e+00 c.14.1.3 106164 1yx1A 264 7.72e+00 1qx4A 274 7.94e+00 b.43.4.2,c.25.1.1 104624,104625 1sqwA 188 8.63e+00 1tqzA 133 9.06e+00 1b24A 188 9.10e+00 1b24A d.95.2.1,d.95.2.1 40573,40574 1khbA 625 9.17e+00 c.91.1.1,c.109.1.1 68606,68607 1vhnA 318 9.20e+00 c.1.4.1 100693 1cqyA 99 9.52e+00 1b9zA b.3.1.1 22527 1hb6A 86 1.01e+01 a.11.1.1 70959 2b59B 172 1.05e+01 1irdB 146 1.10e+01 a.1.1.2 66287 1txkA 498 1.11e+01 b.1.18.2,b.30.5.9 107425,107426 1ttzA 87 1.15e+01 c.47.1.1 107309 1vbvA 105 1.17e+01 1uvqA 197 1.19e+01 b.1.1.2,d.19.1.1 100062,100063 1gyxA 76 1.23e+01 d.80.1.1 76387 1g5aA 628 1.27e+01 b.71.1.1,c.1.8.1 65152,65153 1y9wA 140 1.31e+01 1qhoA 686 1.34e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21844,22513,27751,28738 1bquA 215 1.35e+01 1bquA b.1.2.1,b.1.2.1 22066,22067 1lwdA 413 1.35e+01 c.77.1.1 78265 1xfsA 178 1.35e+01 d.129.3.5 109589 1vfrA 218 1.37e+01 1vfrA d.90.1.1 40247 1e25A 282 1.41e+01 1e25A e.3.1.1 42731 1bkrA 109 1.41e+01 1bkrA a.40.1.1 17394 2abwA 227 1.46e+01 2gw6A 123 1.51e+01 1r1qA 100 1.63e+01 d.93.1.1 104763 1wd2A 60 1.80e+01 g.44.1.1 109232 1u07A 90 1.80e+01 1zkdA 387 1.83e+01 1zcxA 178 1.87e+01 1jf3A 147 1.90e+01 a.1.1.2 71642 1b9wA 89 1.96e+01 1b9wA g.3.11.4,g.3.11.4 44334,44335 1m93C 41 1.96e+01 1sedA 117 1.97e+01 a.219.1.1 105449 2fa8A 105 2.01e+01 2jdxA 385 2.11e+01 1jdw d.126.1.2 41139 1npsA 88 2.18e+01 1prs b.11.1.1 23622 1omrA 201 2.22e+01 a.39.1.5 93349 1fbr 93 2.40e+01 1fbr g.27.1.1,g.27.1.1 44948,44949 1ktbA 405 2.46e+01 b.71.1.1,c.1.8.1 72960,72961 1j3bA 529 2.52e+01 c.91.1.1,c.109.1.1 77071,77072 1w4xA 542 2.54e+01 c.3.1.5,c.3.1.5 109171,109172 1ckaA 57 2.55e+01 1ckaA b.34.2.1 24459 1ur1A 378 2.58e+01 c.1.8.3 99804 1j7gA 144 2.61e+01 c.110.1.1 84130 1iakA 199 2.62e+01 1iakA b.1.1.2,d.19.1.1 21625,38199 1ny1A 240 2.62e+01 c.6.2.3 86395 1d4oA 184 2.62e+01 1d4oA c.31.1.4 31748 1vq3A 94 2.70e+01 2cr5A 109 2.71e+01 1r4gA 53 2.72e+01 a.8.5.1 96996 1s0yA 76 2.73e+01 d.80.1.1 98314 1c75A 71 2.84e+01 451c a.3.1.1 15796 2cw8A 537 2.91e+01 1e19A 314 2.97e+01 1b7bA c.73.1.1 34967 1jdw 423 3.00e+01 1jdw d.126.1.2 41129 2ciaA 102 3.04e+01 1gt1A 159 3.05e+01 b.60.1.1 90515 1t3yA 141 3.17e+01 1ugjA 141 3.23e+01 b.41.1.3 107826 1w41A 101 3.24e+01 1zin 217 3.29e+01 1zin c.37.1.1,g.41.2.1 31915,45178 1nvpB 57 3.37e+01 a.32.1.1 92211 1ztcA 221 3.53e+01 1zy9A 564 3.62e+01 1xhcA 367 3.64e+01 1l1qA 186 3.65e+01 c.61.1.1 77653 1vqoL 165 3.66e+01 1y8qB 640 3.68e+01 2a2pA 129 3.75e+01 2gclA 261 3.77e+01 1un3A 123 4.05e+01 d.5.1.1 99646 1v0jA 399 4.37e+01 1i2uA 44 4.39e+01 g.3.7.4 65987 1eemA 241 4.39e+01 1eemA a.45.1.1,c.47.1.5 17717,33011 1cdq 77 4.40e+01 1cds g.7.1.3 44459 1ne8A 117 4.41e+01 b.34.6.2 80424 2bj0A 203 4.42e+01 5eau 548 4.45e+01 5eat a.102.4.1,a.128.1.3 18851,19443 1qauA 112 4.49e+01 1qauA b.36.1.1 24779 1qjpA 171 4.59e+01 1bxwA f.4.1.1 43742 1dk8A 147 4.62e+01 1agrE a.91.1.1 18548 2dg5B 190 4.62e+01 1j1tA 233 4.62e+01 b.29.1.18 90771 1ne9A 335 4.77e+01 d.108.1.4,d.108.1.4 91839,91840 1vjfA 180 4.83e+01 d.116.1.1 100809 1z1lA 345 4.91e+01 1lmq 129 4.95e+01 3lzt d.2.1.2 36588 1vjlA 164 4.97e+01 d.257.1.1 100822 1ri9A 102 5.00e+01 b.34.2.1 97506 1s4nA 348 5.14e+01 c.68.1.16 98501 1vns 609 5.15e+01 1vns a.111.1.3 19061 1jyoE 105 5.17e+01 d.184.1.2 67487 1tr0A 108 5.20e+01 d.58.4.4 107261 1oksA 56 5.29e+01 a.8.5.1 93271 1vjvA 415 5.29e+01 d.3.1.9 108632 1y14B 171 5.32e+01 1x3sA 195 5.34e+01 1dcjA 81 5.37e+01 1dcjA d.68.3.3 59115 2ct5A 73 5.38e+01 1hxrA 115 5.41e+01 1fwqA b.88.1.1 28392 1om4A 422 5.69e+01 d.174.1.1 87067 1ijqA 316 5.77e+01 1ijqA b.68.5.1,g.3.11.1 62506,62507 1qmvA 197 5.88e+01 1qq2A c.47.1.10 33066 2dbnA 461 5.89e+01 1rf6A 427 5.90e+01 d.68.2.2 97366 2gi9A 56 5.93e+01 1cv8 174 5.97e+01 1cv8 d.3.1.1 37089 1hg8A 349 6.04e+01 b.80.1.3 65830 1fp1D 372 6.04e+01 1fpqA a.4.5.29,c.66.1.12 59939,59940 1tzyA 129 6.18e+01 a.22.1.1 107530 1o9yA 84 6.19e+01 b.139.1.1 92692 2go8A 122 6.22e+01 1fjgP 88 6.31e+01 1emwA d.27.1.1 38444 1o7fA 469 6.31e+01 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 1f5vA 240 6.33e+01 1bkjA d.90.1.1 40255 1q4rA 112 6.48e+01 d.58.4.4 95823 1gqiA 708 6.58e+01 c.1.8.10,d.92.2.2 76279,76280 1te7A 103 6.69e+01 1iseA 185 6.80e+01 d.67.3.1 90691 1lkkA 105 6.88e+01 1lckA d.93.1.1 40412 2ci9A 102 6.89e+01 1w9hA 427 6.95e+01 1u58A 253 6.96e+01 1y88A 199 6.98e+01 1w9aA 147 7.14e+01 1i4uA 181 7.14e+01 b.60.1.1 61732 1mgqA 83 7.15e+01 b.38.1.1 79099 1ct5A 256 7.31e+01 1ct5A c.1.6.2 28663 1pylA 97 7.44e+01 d.1.1.2 104391 2bgcA 238 7.45e+01 1zgzA 122 7.47e+01 1w6sA 599 7.53e+01 1vmjA 151 7.60e+01 2dh4A 340 7.60e+01 1wchA 315 7.61e+01 1dvoA 152 7.62e+01 1dvoA a.136.1.1 19623 2cwpA 112 7.67e+01 1rrmA 386 7.73e+01 e.22.1.2 105081 1uasA 362 7.75e+01 b.71.1.1,c.1.8.1 88388,88389 2dchX 216 7.87e+01 2aq6A 147 7.91e+01 2a25A 193 7.94e+01 2aj6A 159 7.99e+01 1gmuA 143 8.06e+01 b.107.1.1,d.58.38.1 65335,65336 1pl3A 186 8.14e+01 b.1.9.1 88158 1qwlA 505 8.20e+01 e.5.1.1 96483 1dgfA 497 8.20e+01 1cf9A e.5.1.1 42782 1woyA 500 8.26e+01 1wn5A 130 8.43e+01 1vr9A 213 8.57e+01 1hc7A 477 8.58e+01 1hc7A c.51.1.1,d.104.1.1,d.68.5.1 60938,60939,60940 1oacA 727 8.62e+01 1oacA b.30.2.1,d.17.2.1,d.17.2.1,d.82.1.1 24390,38007,38008,40003 1jb7B 260 8.69e+01 1otcB b.40.4.3 62839 1j79A 347 8.73e+01 1j79A c.1.9.4 62675 1zetA 388 8.80e+01 1qhqA 140 8.85e+01 1qhqA b.6.1.1 63326 1aj8A 371 8.86e+01 1aj8A a.103.1.1 18900 1h6hA 143 8.92e+01 d.189.1.1 65681 1zu0A 529 8.94e+01