# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2f4qA 346 1.10e-01 1lktA 104 6.73e-01 1lktA b.90.1.1 28398 1ffyA 917 6.84e-01 1qu2A a.27.1.1,b.51.1.1,c.26.1.1 16926,26891,31593 2c3vA 102 1.77e+00 1qx4A 274 2.45e+00 b.43.4.2,c.25.1.1 104624,104625 1tp6A 128 2.46e+00 d.17.4.12 107184 1zkdA 387 2.76e+00 1yaxA 153 3.07e+00 1yx1A 264 3.36e+00 1dcjA 81 3.54e+00 1dcjA d.68.3.3 59115 1tqzA 133 3.60e+00 1cqyA 99 4.02e+00 1b9zA b.3.1.1 22527 1ui0A 205 4.21e+00 c.18.1.2 99411 1m93C 41 4.80e+00 3nul 130 5.41e+00 3nul d.110.1.1 40891 3ezmA 101 5.89e+00 3ezmA b.89.1.1 28395 1qhoA 686 6.67e+00 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21844,22513,27751,28738 1lwdA 413 6.89e+00 c.77.1.1 78265 1iwdA 215 7.08e+00 d.3.1.1 83756 1cdq 77 7.47e+00 1cds g.7.1.3 44459 1hw7A 255 7.65e+00 1i7fA d.193.1.1 61297 1qmvA 197 7.74e+00 1qq2A c.47.1.10 33066 2fh5A 185 7.92e+00 1vemA 516 9.40e+00 1umkA 275 9.81e+00 2gcc 70 1.07e+01 2gcc d.10.1.2 37484 1kllA 130 1.08e+01 d.32.1.2 72720 1ijqA 316 1.12e+01 1ijqA b.68.5.1,g.3.11.1 62506,62507 1pufB 73 1.22e+01 a.4.1.1 95132 1a8q 274 1.25e+01 1brt c.69.1.12 34702 1w4tA 299 1.35e+01 1h6hA 143 1.36e+01 d.189.1.1 65681 1xfsA 178 1.38e+01 d.129.3.5 109589 1u58A 253 1.51e+01 2a2pA 129 1.64e+01 1v74A 107 1.68e+01 d.243.1.1 100442 1qauA 112 1.70e+01 1qauA b.36.1.1 24779 2fhxA 246 1.73e+01 2bjbA 462 1.77e+01 1xksA 450 1.91e+01 1uasA 362 1.96e+01 b.71.1.1,c.1.8.1 88388,88389 1vjvA 415 2.00e+01 d.3.1.9 108632 1ne9A 335 2.06e+01 d.108.1.4,d.108.1.4 91839,91840 1p2hA 571 2.07e+01 a.138.1.3,c.3.1.4,d.168.1.1 93930,93931,93932 1qb5D 99 2.16e+01 b.40.2.1 88357 2cr5A 109 2.17e+01 1vjfA 180 2.18e+01 d.116.1.1 100809 1vr9A 213 2.25e+01 1woyA 500 2.27e+01 1tljA 213 2.34e+01 d.282.1.1 107126 1szoA 257 2.47e+01 c.14.1.3 106164 1kaeA 434 2.55e+01 c.82.1.2 72247 1vecA 206 2.58e+01 c.37.1.19 100575 1vetA 124 2.59e+01 d.110.7.1 108553 1p57A 114 2.62e+01 d.170.1.2 94125 1huxA 270 2.65e+01 1huxA c.55.1.5 61278 2fikA 287 2.66e+01 1w9hA 427 2.68e+01 1xxqA 161 2.76e+01 2basA 431 2.76e+01 1y88A 199 2.78e+01 1vq2A 193 2.82e+01 2fa8A 105 2.84e+01 1zu0A 529 2.85e+01 1h4rA 314 2.88e+01 a.11.2.1,b.55.1.5,d.15.1.4 65616,65617,65618 1cv8 174 2.93e+01 1cv8 d.3.1.1 37089 2go8A 122 2.94e+01 1qg7A 67 2.97e+01 1a15A d.9.1.1 37449 1g5aA 628 3.06e+01 b.71.1.1,c.1.8.1 65152,65153 1wdvA 152 3.11e+01 1nrlA 316 3.17e+01 a.123.1.1 92091 1odzA 386 3.24e+01 c.1.8.3 86889 1ttzA 87 3.27e+01 c.47.1.1 107309 1qjpA 171 3.30e+01 1bxwA f.4.1.1 43742 1ry9A 145 3.32e+01 d.198.1.1 98094 1f00I 282 3.33e+01 1f00I b.1.14.1,b.1.14.1,d.169.1.3 22368,22369,42439 1mqeA 207 3.35e+01 d.113.1.1 91394 1ryaA 160 3.36e+01 d.113.1.5 105122 2cw8A 537 3.38e+01 2cl1A 279 3.46e+01 1vkiA 181 3.46e+01 d.116.1.1 108664 1txkA 498 3.50e+01 b.1.18.2,b.30.5.9 107425,107426 1ckaA 57 3.52e+01 1ckaA b.34.2.1 24459 2c6cA 707 3.57e+01 1htrB 329 3.79e+01 1smrA 1v30A 124 3.84e+01 1vbvA 105 3.87e+01 2bf6A 449 3.94e+01 1p6oA 161 3.95e+01 c.97.1.2 94185 1w41A 101 4.02e+01 2dg5B 190 4.10e+01 2cvzA 289 4.14e+01 2fnjA 226 4.16e+01 1o9yA 84 4.20e+01 b.139.1.1 92692 1y9wA 140 4.21e+01 1bywA 110 4.33e+01 1bywA d.110.3.6 40912 1ttwA 138 4.35e+01 d.198.1.1 107308 1qe3A 489 4.40e+01 2bce c.69.1.1 34630 1iscA 192 4.45e+01 1avmA a.2.11.1,d.44.1.1 15733,38726 1yqtA 538 4.47e+01 1wrvA 308 4.57e+01 1b9wA 89 4.67e+01 1b9wA g.3.11.4,g.3.11.4 44334,44335 1zo2A 129 4.69e+01 2cfuA 658 4.77e+01 1n13B 113 4.78e+01 1uu1A 335 4.81e+01 c.67.1.1 99993 1r77A 103 4.84e+01 1z0wA 207 4.94e+01 1b8aA 438 4.97e+01 1b8aA b.40.4.1,d.104.1.1 25244,40765 1gsa 316 5.03e+01 1gsa c.30.1.3,d.142.1.1 31718,41477 1msc 129 5.11e+01 1msc d.85.1.1 40039 1kb0A 677 5.20e+01 a.3.1.6,b.70.1.1 68378,68379 2ap1A 327 5.26e+01 2fafA 608 5.29e+01 1qhdA 398 5.40e+01 1qhdA a.115.1.2,b.19.1.1 63324,63325 1vcdA 126 5.44e+01 2crvA 120 5.45e+01 1cuk 203 5.56e+01 1hjp a.5.1.1,a.60.2.1,b.40.4.2 16273,17946,25265 2cu3A 64 5.66e+01 1ztcA 221 5.75e+01 1gmuA 143 5.80e+01 b.107.1.1,d.58.38.1 65335,65336 2dchX 216 5.81e+01 1gpeA 587 5.82e+01 1gpeA c.3.1.2,d.16.1.1 30387,37951 2db9A 149 5.82e+01 1l2tA 235 5.99e+01 c.37.1.12 73514 1uwzA 136 6.00e+01 c.97.1.1 108081 1voqa 90 6.02e+01 2ghrA 302 6.06e+01 1bco 327 6.32e+01 1bco b.48.1.1,c.55.3.3 26431,33676 1u14A 172 6.39e+01 c.51.4.3 107579 1l6rA 227 6.42e+01 c.108.1.10 77768 1xqaA 113 6.54e+01 1xkiA 162 6.56e+01 1ccwB 483 6.59e+01 1cb7B c.1.19.2 29646 1e19A 314 6.59e+01 1b7bA c.73.1.1 34967 1wba 175 6.67e+01 1wba b.42.4.1 25591 1gt1A 159 6.69e+01 b.60.1.1 90515 2fv7A 331 6.78e+01 1y8qB 640 6.78e+01 1pjxA 314 6.82e+01 b.68.6.1 104167 1sq2N 113 6.82e+01 b.1.1.1 105881 1vjlA 164 6.91e+01 d.257.1.1 100822 2gnrA 145 6.92e+01 2evrA 246 6.96e+01 1ifqA 138 7.02e+01 1ifqA d.110.4.1 62350 1itbB 315 7.02e+01 1itbB b.1.1.4,b.1.1.4,b.1.1.4 21720,21721,21722 1pvmA 184 7.12e+01 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 2cohA 202 7.16e+01 1jidA 128 7.21e+01 d.201.1.1 66735 2fq9A 225 7.32e+01 1k55A 246 7.37e+01 e.3.1.1 68156 1wm3A 72 7.38e+01 2b59B 172 7.41e+01 1un3A 123 7.42e+01 d.5.1.1 99646 1g8kA 825 7.44e+01 1g8jA b.52.2.2,c.81.1.1 26920,35328 1sqeA 109 7.53e+01 d.58.4.5 105908 1j1tA 233 7.57e+01 b.29.1.18 90771 1hxrA 115 7.62e+01 1fwqA b.88.1.1 28392 1d4oA 184 7.73e+01 1d4oA c.31.1.4 31748 1xkzA 255 7.78e+01 1w6sA 599 7.87e+01 1um5H 217 7.94e+01 1k82A 268 8.16e+01 a.156.1.2,b.113.1.1,g.39.1.8 75866,75867,75868 1jfmA 174 8.17e+01 d.19.1.1 66640 1hw5A 210 8.17e+01 2cgpA a.4.5.4,b.82.3.2 16098,28137 2choA 716 8.29e+01 1jtdB 273 8.46e+01 b.69.5.2 67265 2a25A 193 8.47e+01 1z2mA 155 8.63e+01 2a2lA 145 8.63e+01 1te7A 103 8.64e+01 1cr5A 189 8.72e+01 1cr5A b.52.2.3,d.31.1.1 26931,38465 2arcA 164 8.77e+01 2arcA b.82.4.1 28148 2chnA 716 8.79e+01 1m6iA 493 8.86e+01 c.3.1.5,c.3.1.5,d.87.1.1 74533,74534,74535 1ny1A 240 8.89e+01 c.6.2.3 86395 1n9lA 109 8.89e+01 d.110.3.6 85468 1pylA 97 8.98e+01 d.1.1.2 104391