# List of top-scoring protein chains for t06-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2f4qA 346 2.95e-02 1lktA 104 3.78e-01 1lktA b.90.1.1 28398 2c3vA 102 5.78e-01 1zkdA 387 7.92e-01 1tp6A 128 1.06e+00 d.17.4.12 107184 1yx1A 264 1.16e+00 1ui0A 205 1.20e+00 c.18.1.2 99411 1tqzA 133 1.48e+00 1m93C 41 1.83e+00 1cqyA 99 1.96e+00 1b9zA b.3.1.1 22527 1yaxA 153 2.00e+00 2cr5A 109 2.31e+00 1qmvA 197 2.32e+00 1qq2A c.47.1.10 33066 1ijqA 316 2.73e+00 1ijqA b.68.5.1,g.3.11.1 62506,62507 2fh5A 185 3.12e+00 1qhdA 398 3.46e+00 1qhdA a.115.1.2,b.19.1.1 63324,63325 1h6hA 143 3.52e+00 d.189.1.1 65681 1xfsA 178 3.64e+00 d.129.3.5 109589 1ffyA 917 3.77e+00 1qu2A a.27.1.1,b.51.1.1,c.26.1.1 16926,26891,31593 1vemA 516 3.85e+00 2c6cA 707 3.86e+00 1qhoA 686 4.00e+00 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21844,22513,27751,28738 1kllA 130 4.10e+00 d.32.1.2 72720 2gcc 70 4.45e+00 2gcc d.10.1.2 37484 1vq2A 193 4.51e+00 1h4rA 314 5.39e+00 a.11.2.1,b.55.1.5,d.15.1.4 65616,65617,65618 1iwdA 215 5.43e+00 d.3.1.1 83756 3ezmA 101 5.53e+00 3ezmA b.89.1.1 28395 1dcjA 81 5.80e+00 1dcjA d.68.3.3 59115 1v74A 107 5.91e+00 d.243.1.1 100442 2a2pA 129 5.96e+00 3nul 130 6.10e+00 3nul d.110.1.1 40891 1lwdA 413 6.20e+00 c.77.1.1 78265 2fhxA 246 6.89e+00 1p2hA 571 7.09e+00 a.138.1.3,c.3.1.4,d.168.1.1 93930,93931,93932 1z2mA 155 7.11e+00 1qb5D 99 7.32e+00 b.40.2.1 88357 1ryaA 160 7.81e+00 d.113.1.5 105122 1qx4A 274 8.62e+00 b.43.4.2,c.25.1.1 104624,104625 1w4tA 299 9.01e+00 1uasA 362 9.56e+00 b.71.1.1,c.1.8.1 88388,88389 1pufB 73 9.88e+00 a.4.1.1 95132 1cdq 77 1.02e+01 1cds g.7.1.3 44459 1wm3A 72 1.06e+01 1y88A 199 1.06e+01 1gmuA 143 1.08e+01 b.107.1.1,d.58.38.1 65335,65336 1l6rA 227 1.10e+01 c.108.1.10 77768 1txkA 498 1.10e+01 b.1.18.2,b.30.5.9 107425,107426 1w9hA 427 1.13e+01 1zndA 174 1.13e+01 1vjfA 180 1.13e+01 d.116.1.1 100809 1vcdA 126 1.18e+01 1xxqA 161 1.19e+01 1a8q 274 1.23e+01 1brt c.69.1.12 34702 1qy1A 174 1.24e+01 b.60.1.1 96568 1cv8 174 1.30e+01 1cv8 d.3.1.1 37089 1npeA 267 1.31e+01 b.68.5.1 92032 1tljA 213 1.37e+01 d.282.1.1 107126 1gqzA 274 1.38e+01 d.21.1.1,d.21.1.1 83311,83312 1hw7A 255 1.38e+01 1i7fA d.193.1.1 61297 1kb0A 677 1.43e+01 a.3.1.6,b.70.1.1 68378,68379 1p57A 114 1.46e+01 d.170.1.2 94125 1qg7A 67 1.49e+01 1a15A d.9.1.1 37449 1q7fA 286 1.54e+01 b.68.9.1 96036 1ne9A 335 1.55e+01 d.108.1.4,d.108.1.4 91839,91840 1kaeA 434 1.58e+01 c.82.1.2 72247 1nrlA 316 1.59e+01 a.123.1.1 92091 2ap1A 327 1.60e+01 1un3A 123 1.63e+01 d.5.1.1 99646 1zu0A 529 1.65e+01 2cohA 202 1.68e+01 1pm1X 180 1.71e+01 b.60.1.1 104189 1vr9A 213 1.72e+01 1c96A 753 1.72e+01 1amj c.8.2.1,c.83.1.1 30727,35403 1xc3A 302 1.73e+01 1uvqA 197 1.83e+01 b.1.1.2,d.19.1.1 100062,100063 1jofA 365 1.86e+01 b.69.10.1 71775 2cu3A 64 1.94e+01 2cfuA 658 1.96e+01 1u58A 253 1.97e+01 2basA 431 1.98e+01 1voqa 90 2.03e+01 1vetA 124 2.04e+01 d.110.7.1 108553 1wdvA 152 2.08e+01 1u5xA 140 2.19e+01 1qauA 112 2.23e+01 1qauA b.36.1.1 24779 1sc6A 404 2.25e+01 1xvqA 175 2.29e+01 2go8A 122 2.33e+01 1huxA 270 2.40e+01 1huxA c.55.1.5 61278 1xkiA 162 2.42e+01 1b9wA 89 2.42e+01 1b9wA g.3.11.4,g.3.11.4 44334,44335 1vbvA 105 2.42e+01 2cw9A 194 2.44e+01 1gt1A 159 2.49e+01 b.60.1.1 90515 1f00I 282 2.51e+01 1f00I b.1.14.1,b.1.14.1,d.169.1.3 22368,22369,42439 1mqeA 207 2.57e+01 d.113.1.1 91394 1l0bA 229 2.57e+01 c.15.1.3,c.15.1.3 73391,73392 1b8aA 438 2.65e+01 1b8aA b.40.4.1,d.104.1.1 25244,40765 2gfoA 396 2.73e+01 1w6sA 599 2.76e+01 1l2tA 235 2.76e+01 c.37.1.12 73514 1x6oA 174 2.79e+01 b.34.5.2,b.40.4.5 109493,109494 1qjpA 171 2.85e+01 1bxwA f.4.1.1 43742 1vecA 206 2.95e+01 c.37.1.19 100575 2fikA 287 2.96e+01 2fq9A 225 2.97e+01 1n13B 113 2.99e+01 2crvA 120 3.00e+01 1y9wA 140 3.01e+01 1vkiA 181 3.04e+01 d.116.1.1 108664 1byrA 155 3.05e+01 1byrA d.136.1.1 41450 1itbB 315 3.07e+01 1itbB b.1.1.4,b.1.1.4,b.1.1.4 21720,21721,21722 1e25A 282 3.08e+01 1e25A e.3.1.1 42731 2ghrA 302 3.13e+01 1iow 306 3.22e+01 1iow c.30.1.2,d.142.1.1 31713,41481 1q0qA 406 3.22e+01 a.69.3.1,c.2.1.3,d.81.1.3 104464,104465,104466 1hw5A 210 3.35e+01 2cgpA a.4.5.4,b.82.3.2 16098,28137 1ztcA 221 3.35e+01 2evrA 246 3.39e+01 1pylA 97 3.39e+01 d.1.1.2 104391 2bjbA 462 3.41e+01 1xkgA 312 3.43e+01 1h0hA 977 3.49e+01 b.52.2.2,c.81.1.1 76435,76436 1kicA 339 3.59e+01 c.70.1.1 72510 2bgiA 272 3.60e+01 1o7zA 77 3.62e+01 d.9.1.1 86660 1bco 327 3.63e+01 1bco b.48.1.1,c.55.3.3 26431,33676 2cvzA 289 3.64e+01 1i8aA 189 3.67e+01 1i82A b.1.9.2 61951 1ri9A 102 3.68e+01 b.34.2.1 97506 1k55A 246 3.68e+01 e.3.1.1 68156 1umkA 275 3.78e+01 1vplA 256 3.78e+01 1htrB 329 3.81e+01 1smrA 2gjdA 157 3.82e+01 1l0wA 580 3.83e+01 b.40.4.1,d.74.4.1,d.104.1.1 73426,73427,73428 1pjxA 314 3.85e+01 b.68.6.1 104167 2fv7A 331 3.91e+01 1uhvA 500 3.98e+01 b.71.1.2,c.1.8.3 99402,99403 1v30A 124 3.98e+01 1wba 175 4.01e+01 1wba b.42.4.1 25591 1r77A 103 4.02e+01 1x0rA 249 4.02e+01 1h80A 464 4.03e+01 b.80.1.8 65714 1nzjA 298 4.11e+01 c.26.1.1 92377 2bkrA 212 4.12e+01 1uwzA 136 4.12e+01 c.97.1.1 108081 1rewC 135 4.15e+01 g.7.1.3 97336 1wrvA 308 4.23e+01 2fnjA 226 4.33e+01 1iscA 192 4.33e+01 1avmA a.2.11.1,d.44.1.1 15733,38726 1iakA 199 4.35e+01 1iakA b.1.1.2,d.19.1.1 21625,38199 3il8 72 4.41e+01 1tvxA d.9.1.1 37356 2aa4A 289 4.41e+01 2a2lA 145 4.47e+01 1lfdA 87 4.50e+01 1lfdA d.15.1.5 37622 1u14A 172 4.54e+01 c.51.4.3 107579 2bs3A 656 4.56e+01 1fjgP 88 4.59e+01 1emwA d.27.1.1 38444 1z0wA 207 4.59e+01 1b0uA 262 4.66e+01 1b0uA c.37.1.12 32370 1ny1A 240 4.66e+01 c.6.2.3 86395 2b59B 172 4.74e+01 1xqaA 113 4.77e+01 1tvxA 75 4.78e+01 1tvxA d.9.1.1 37441 2gkeA 274 4.85e+01 2b3yA 888 4.87e+01 1vqoS 85 4.89e+01 2he7A 283 4.96e+01 1d4oA 184 4.99e+01 1d4oA c.31.1.4 31748 1op3H 225 5.01e+01 b.1.1.1,b.1.1.2 87208,87209 1lrzA 426 5.04e+01 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 1w41A 101 5.10e+01 1ecfA 504 5.12e+01 1ecfB c.61.1.1,d.153.1.1 34053,41820 2bf6A 449 5.13e+01 1msc 129 5.15e+01 1msc d.85.1.1 40039 1m9xC 146 5.21e+01 a.73.1.1 84907 1oxxK 353 5.26e+01 b.40.6.3,c.37.1.12 93715,93716 1tedA 393 5.29e+01 c.95.1.2 106807 2dchX 216 5.30e+01 1vbiA 344 5.30e+01 1yqtA 538 5.31e+01 1g5aA 628 5.32e+01 b.71.1.1,c.1.8.1 65152,65153 2b7kA 200 5.34e+01 1qwyA 291 5.38e+01 b.84.3.2 96509 1pot 325 5.40e+01 1pot c.94.1.1 35807 1ccwB 483 5.44e+01 1cb7B c.1.19.2 29646 1vjvA 415 5.46e+01 d.3.1.9 108632 2a74B 188 5.48e+01 1bywA 110 5.52e+01 1bywA d.110.3.6 40912 1ttwA 138 5.59e+01 d.198.1.1 107308 1btn 106 5.61e+01 1btn b.55.1.1 26952 1e19A 314 5.63e+01 1b7bA c.73.1.1 34967 2c7xA 436 5.80e+01 2g6bA 180 5.85e+01 1jb0E 75 5.88e+01 1pse b.34.4.2 62824 2gaiA 633 5.90e+01 2bwkA 121 5.92e+01 2cl1A 279 5.97e+01 1xk5A 204 6.07e+01 1x54A 434 6.10e+01 2dg5B 190 6.14e+01 1ws0A 156 6.14e+01 1ru3A 732 6.26e+01 e.26.1.3 97835 1am2 199 6.29e+01 1am2 b.86.1.2 28381 1dpjA 329 6.34e+01 1smrA b.50.1.2 26828 1ifqA 138 6.38e+01 1ifqA d.110.4.1 62350 1q3oA 109 6.40e+01 b.36.1.1 95700 1n9lA 109 6.41e+01 d.110.3.6 85468 1e0bA 68 6.42e+01 1e0bA b.34.13.2 37476 1ospO 257 6.49e+01 1ospO b.76.1.1 27971 1iueA 98 6.49e+01 d.15.4.1 90697 1r1qA 100 6.56e+01 d.93.1.1 104763 1qveA 126 6.62e+01 d.24.1.1 104594 1gqiA 708 6.71e+01 c.1.8.10,d.92.2.2 76279,76280 1xksA 450 6.73e+01 2cw8A 537 6.73e+01 1s68A 249 6.86e+01 d.142.2.4 98591 1j1tA 233 6.88e+01 b.29.1.18 90771 2db9A 149 6.91e+01 1q1uA 144 6.95e+01 b.42.1.1 95608 1ttzA 87 6.98e+01 c.47.1.1 107309 1wqsA 173 7.05e+01 1bquA 215 7.06e+01 1bquA b.1.2.1,b.1.2.1 22066,22067 1fnd 314 7.06e+01 1fnc b.43.4.2,c.25.1.1 25626,31516 1o7nA 449 7.06e+01 b.33.1.2,d.129.3.3 81162,81163 1l7mA 211 7.09e+01 c.108.1.4 73664 1gpeA 587 7.18e+01 1gpeA c.3.1.2,d.16.1.1 30387,37951 1sur 215 7.18e+01 1sur c.26.2.2 31620 2grrB 170 7.19e+01 1k8kA 418 7.23e+01 c.55.1.1,c.55.1.1 68305,68306 2a5hA 416 7.32e+01 2dg5A 366 7.32e+01 1p6oA 161 7.36e+01 c.97.1.2 94185 2gu3A 136 7.52e+01 1s4uX 407 7.54e+01 1vggA 161 7.55e+01 2gwnA 452 7.60e+01 1bx1A 314 7.61e+01 1fnc b.43.4.2,c.25.1.1 25629,31519 2a15A 139 7.61e+01 2bc4B 211 7.63e+01 2g8jA 339 7.64e+01 1dmhA 311 7.72e+01 1dmhA b.3.6.1 22633 1uu1A 335 7.80e+01 c.67.1.1 99993 1bu6O 501 7.82e+01 1glcG c.55.1.4,c.55.1.4 33499,33500 1d3bA 75 7.93e+01 1d3bA b.38.1.1 24798 1tl9A 339 7.94e+01 2cwrA 103 7.95e+01 1r6lA 239 7.97e+01 d.14.1.4,d.101.1.1 97153,97154 1o9yA 84 7.99e+01 b.139.1.1 92692 2a25A 193 8.02e+01 1xwwA 157 8.03e+01 2c4xA 260 8.05e+01 2esnA 310 8.09e+01 1sqhA 312 8.15e+01 d.108.1.5 98966 1pvmA 184 8.24e+01 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 1qqp1 213 8.27e+01 1qqp1 1u7pA 164 8.31e+01 2bngA 149 8.33e+01 1sr8A 298 8.37e+01 e.54.1.1 105959 2chnA 716 8.37e+01 1nb8A 353 8.38e+01 d.3.1.9 80385 1eu1A 780 8.40e+01 1dmr b.52.2.2,c.81.1.1 26903,35311 2bynA 227 8.44e+01 1h3qA 140 8.59e+01 d.110.4.3 76652 1lgpA 116 8.62e+01 b.26.1.2 73890 2choA 716 8.65e+01 1j79A 347 8.65e+01 1j79A c.1.9.4 62675 1c44A 123 8.86e+01 1qndA d.106.1.1 40795 1mdbA 539 8.90e+01 e.23.1.1 79008 1q4uA 151 8.90e+01 d.38.1.5 95828 1xvsA 126 8.92e+01 2bjfA 329 8.93e+01 1cb8A 678 8.96e+01 1cb8A a.102.3.2,b.24.1.1,b.30.5.2 18849,23898,24422 1xf1A 926 8.96e+01