# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2f4qA 346 1.41e-01 1ffyA 917 1.84e-01 1qu2A a.27.1.1,b.51.1.1,c.26.1.1 16926,26891,31593 2c3vA 102 5.39e-01 1lniA 96 1.38e+00 d.1.1.2 74046 1qx4A 274 1.91e+00 b.43.4.2,c.25.1.1 104624,104625 1yksA 440 1.95e+00 1tqzA 133 2.42e+00 1yaxA 153 2.93e+00 1iscA 192 3.45e+00 1avmA a.2.11.1,d.44.1.1 15733,38726 1tkeA 224 3.46e+00 2fafA 608 3.86e+00 1tp6A 128 4.18e+00 d.17.4.12 107184 1jsf 130 4.31e+00 3lzt d.2.1.2 36410 1ttzA 87 6.12e+00 c.47.1.1 107309 1szoA 257 7.01e+00 c.14.1.3 106164 1ui0A 205 7.15e+00 c.18.1.2 99411 1g5aA 628 7.26e+00 b.71.1.1,c.1.8.1 65152,65153 1i3dA 146 8.31e+00 a.1.1.2 61587 1zcxA 178 8.91e+00 1lwdA 413 8.95e+00 c.77.1.1 78265 1qhoA 686 1.08e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21844,22513,27751,28738 1vr8A 142 1.10e+01 1omrA 201 1.11e+01 a.39.1.5 93349 1cdq 77 1.14e+01 1cds g.7.1.3 44459 1o9yA 84 1.23e+01 b.139.1.1 92692 1vq2A 193 1.23e+01 1ugjA 141 1.25e+01 b.41.1.3 107826 1jogA 146 1.35e+01 a.24.16.2 77142 1cqyA 99 1.38e+01 1b9zA b.3.1.1 22527 1mgrA 99 1.42e+01 d.1.1.2 79106 1hb6A 86 1.51e+01 a.11.1.1 70959 1bquA 215 1.91e+01 1bquA b.1.2.1,b.1.2.1 22066,22067 1vfrA 218 1.95e+01 1vfrA d.90.1.1 40247 1lktA 104 1.98e+01 1lktA b.90.1.1 28398 1un3A 123 2.03e+01 d.5.1.1 99646 1bkrA 109 2.19e+01 1bkrA a.40.1.1 17394 1u07A 90 2.25e+01 2cfuA 658 2.27e+01 1khbA 625 2.35e+01 c.91.1.1,c.109.1.1 68606,68607 1o7fA 469 2.59e+01 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 1rxqA 178 2.70e+01 a.213.1.1 105118 1p6oA 161 2.73e+01 c.97.1.2 94185 1izoA 417 2.73e+01 a.104.1.1 83851 1xewY 172 2.91e+01 1zosA 230 2.96e+01 1ur1A 378 3.01e+01 c.1.8.3 99804 1dk8A 147 3.02e+01 1agrE a.91.1.1 18548 1gt1A 159 3.09e+01 b.60.1.1 90515 1m0uA 249 3.10e+01 a.45.1.1,c.47.1.5 78359,78360 1uvqA 197 3.18e+01 b.1.1.2,d.19.1.1 100062,100063 1zkdA 387 3.19e+01 1zetA 388 3.21e+01 2a25A 193 3.22e+01 1h6hA 143 3.31e+01 d.189.1.1 65681 1v30A 124 3.31e+01 1fnd 314 3.38e+01 1fnc b.43.4.2,c.25.1.1 25626,31516 2fa8A 105 3.38e+01 1iakA 199 3.38e+01 1iakA b.1.1.2,d.19.1.1 21625,38199 1bouA 139 3.44e+01 1bouA a.88.1.1 18521 1n82A 331 3.44e+01 c.1.8.3 91703 1y8qB 640 3.47e+01 1zbfA 142 3.47e+01 1qfoA 119 3.50e+01 1qfoA b.1.1.1 19708 1ne8A 117 3.56e+01 b.34.6.2 80424 1vjfA 180 3.57e+01 d.116.1.1 100809 1vhnA 318 3.59e+01 c.1.4.1 100693 1g8kA 825 3.61e+01 1g8jA b.52.2.2,c.81.1.1 26920,35328 1ucpA 91 3.62e+01 a.77.1.5 99186 1b24A 188 3.86e+01 1b24A d.95.2.1,d.95.2.1 40573,40574 1w4xA 542 3.99e+01 c.3.1.5,c.3.1.5 109171,109172 1dcjA 81 4.01e+01 1dcjA d.68.3.3 59115 1bx1A 314 4.02e+01 1fnc b.43.4.2,c.25.1.1 25629,31519 1mhnA 59 4.17e+01 b.34.9.1 84964 2b59B 172 4.20e+01 1zy9A 564 4.33e+01 1j3bA 529 4.34e+01 c.91.1.1,c.109.1.1 77071,77072 1kafA 108 4.36e+01 d.199.1.1 68372 1dvoA 152 4.54e+01 1dvoA a.136.1.1 19623 1u5xA 140 4.61e+01 2ciaA 102 4.81e+01 1twfK 120 4.83e+01 1gyxA 76 4.88e+01 d.80.1.1 76387 1v0jA 399 4.97e+01 1v74A 107 5.11e+01 d.243.1.1 100442 1wd2A 60 5.11e+01 g.44.1.1 109232 1zr6A 503 5.13e+01 1krs 120 5.22e+01 1krs b.40.4.1 25256 1vziA 126 5.23e+01 b.1.13.1,g.41.5.2 108967,108968 1irdB 146 5.33e+01 a.1.1.2 66287 1b9wA 89 5.47e+01 1b9wA g.3.11.4,g.3.11.4 44334,44335 1lkkA 105 5.53e+01 1lckA d.93.1.1 40412 1fjgP 88 5.53e+01 1emwA d.27.1.1 38444 1s6xA 34 5.54e+01 1jb7B 260 5.59e+01 1otcB b.40.4.3 62839 1n1bA 549 5.64e+01 a.102.4.1,a.128.1.3 79799,79800 1ry9A 145 5.68e+01 d.198.1.1 98094 1w4tA 299 5.83e+01 1pvmA 184 5.84e+01 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 1ztcA 221 5.98e+01 1umkA 275 6.00e+01 1yx1A 264 6.12e+01 1aj8A 371 6.13e+01 1aj8A a.103.1.1 18900 1j71A 334 6.13e+01 1eagA b.50.1.2 62669 1om4A 422 6.13e+01 d.174.1.1 87067 1w41A 101 6.15e+01 1vqoL 165 6.15e+01 2cr5A 109 6.22e+01 1ryaA 160 6.31e+01 d.113.1.5 105122 1y88A 199 6.44e+01 1wn5A 130 6.47e+01 2dpiA 420 6.52e+01 1qmvA 197 6.71e+01 1qq2A c.47.1.10 33066 1xfsA 178 6.84e+01 d.129.3.5 109589 2gw6A 123 6.87e+01 2bdeA 470 6.92e+01 1txkA 498 6.92e+01 b.1.18.2,b.30.5.9 107425,107426 2fq9A 225 6.96e+01 2cq8A 110 7.04e+01 1pylA 97 7.12e+01 d.1.1.2 104391 1nvpB 57 7.24e+01 a.32.1.1 92211 1jf3A 147 7.26e+01 a.1.1.2 71642 1yuiA 54 7.32e+01 1yuiA g.37.1.1 45073 1c75A 71 7.42e+01 451c a.3.1.1 15796 1ugxA 133 7.51e+01 2exnA 136 7.69e+01 2bkaA 242 7.86e+01 2bj0A 203 7.87e+01 1he7A 126 8.02e+01 1wwcA b.1.1.4 60970 1npsA 88 8.05e+01 1prs b.11.1.1 23622 1qg7A 67 8.13e+01 1a15A d.9.1.1 37449 2dbnA 461 8.22e+01 2hgf 97 8.24e+01 1bhtA g.10.1.1 44607 2arcA 164 8.31e+01 2arcA b.82.4.1 28148 1sq2N 113 8.36e+01 b.1.1.1 105881 2d1uA 104 8.39e+01 1pufB 73 8.47e+01 a.4.1.1 95132 2db1A 118 8.52e+01 1ri9A 102 8.55e+01 b.34.2.1 97506 1vbvA 105 8.57e+01 1q0eA 152 8.78e+01 b.1.8.1 95504 1uliA 460 8.82e+01 b.33.1.2,d.129.3.3 107921,107922 2a2pA 129 8.86e+01 1sqwA 188 8.93e+01 1go4A 205 8.96e+01 d.135.1.1 70292