# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2f4qA 346 1.11e-01 1lktA 104 7.13e-01 1lktA b.90.1.1 28398 1ffyA 917 7.62e-01 1qu2A a.27.1.1,b.51.1.1,c.26.1.1 16926,26891,31593 2c3vA 102 2.39e+00 1dcjA 81 2.51e+00 1dcjA d.68.3.3 59115 1yaxA 153 3.31e+00 1tp6A 128 3.41e+00 d.17.4.12 107184 1yx1A 264 4.07e+00 1zkdA 387 4.71e+00 1qx4A 274 4.74e+00 b.43.4.2,c.25.1.1 104624,104625 1ui0A 205 4.82e+00 c.18.1.2 99411 1tqzA 133 4.85e+00 1cqyA 99 5.28e+00 1b9zA b.3.1.1 22527 1m93C 41 5.97e+00 3ezmA 101 6.60e+00 3ezmA b.89.1.1 28395 1kllA 130 7.02e+00 d.32.1.2 72720 1u0tA 307 7.46e+00 e.52.1.1 107567 1ndh 272 7.84e+00 1ndh b.43.4.2,c.25.1.1 25662,31552 1qhoA 686 8.92e+00 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21844,22513,27751,28738 2fh5A 185 9.34e+00 1hw7A 255 9.40e+00 1i7fA d.193.1.1 61297 1lwdA 413 9.80e+00 c.77.1.1 78265 1zq7A 207 1.06e+01 1qmvA 197 1.08e+01 1qq2A c.47.1.10 33066 3nul 130 1.09e+01 3nul d.110.1.1 40891 1iwdA 215 1.10e+01 d.3.1.1 83756 1cdq 77 1.16e+01 1cds g.7.1.3 44459 1a8q 274 1.18e+01 1brt c.69.1.12 34702 1i7pA 274 1.21e+01 b.43.4.2,c.25.1.1 66048,66049 2gcc 70 1.25e+01 2gcc d.10.1.2 37484 1ijqA 316 1.29e+01 1ijqA b.68.5.1,g.3.11.1 62506,62507 1vemA 516 1.37e+01 1m9sA 605 1.46e+01 b.1.18.15,b.34.11.1,b.34.11.1,b.34.11.1,c.10.2.1 78874,78875,78876,78877,78878 1itcA 516 1.48e+01 b.3.1.1,c.1.8.1 83705,83706 1pufB 73 1.52e+01 a.4.1.1 95132 1w4tA 299 1.64e+01 2bzuA 181 1.79e+01 2a2pA 129 1.81e+01 1umkA 275 1.83e+01 1uasA 362 1.83e+01 b.71.1.1,c.1.8.1 88388,88389 1xfsA 178 1.83e+01 d.129.3.5 109589 1mkeA 152 1.87e+01 b.55.1.4 79231 1m7xA 617 1.92e+01 b.1.18.2,b.71.1.1,c.1.8.1 78749,78750,78751 1xksA 450 1.92e+01 1u58A 253 2.04e+01 1qauA 112 2.05e+01 1qauA b.36.1.1 24779 2bjbA 462 2.32e+01 1v74A 107 2.35e+01 d.243.1.1 100442 1vr9A 213 2.37e+01 1zu0A 529 2.50e+01 1huxA 270 2.57e+01 1huxA c.55.1.5 61278 1vjfA 180 2.62e+01 d.116.1.1 100809 1woyA 500 2.65e+01 1vecA 206 2.72e+01 c.37.1.19 100575 1b72B 87 2.77e+01 1akhA a.4.1.1 16001 1p2hA 571 2.78e+01 a.138.1.3,c.3.1.4,d.168.1.1 93930,93931,93932 1y0pA 571 2.81e+01 1q9iA 571 2.82e+01 a.138.1.3,c.3.1.4,d.168.1.1 96273,96274,96275 1e39A 571 2.83e+01 1qjdA a.138.1.3,c.3.1.4,d.168.1.1 19694,30431,42314 1kssA 571 2.87e+01 a.138.1.3,c.3.1.4,d.168.1.1 72928,72929,72930 2fhxA 246 2.87e+01 1ne9A 335 2.88e+01 d.108.1.4,d.108.1.4 91839,91840 2basA 431 2.93e+01 1pqzA 238 2.96e+01 b.1.1.2,d.19.1.1 104297,104298 1h6hA 143 2.97e+01 d.189.1.1 65681 2fa8A 105 2.99e+01 1qb5D 99 3.04e+01 b.40.2.1 88357 1tiiD 99 3.09e+01 1tiiD b.40.2.1 24965 2go8A 122 3.10e+01 2akrA 285 3.10e+01 1g5aA 628 3.12e+01 b.71.1.1,c.1.8.1 65152,65153 1wdvA 152 3.13e+01 1o8uA 257 3.18e+01 c.14.1.3 81194 1szoA 257 3.18e+01 c.14.1.3 106164 1kaeA 434 3.25e+01 c.82.1.2 72247 1vjvA 415 3.35e+01 d.3.1.9 108632 1vetA 124 3.36e+01 d.110.7.1 108553 2cvzA 289 3.45e+01 1h4rA 314 3.46e+01 a.11.2.1,b.55.1.5,d.15.1.4 65616,65617,65618 2pil 159 3.49e+01 2pil d.24.1.1 38376 1vq2A 193 3.52e+01 1txkA 498 3.57e+01 b.1.18.2,b.30.5.9 107425,107426 2fikA 287 3.60e+01 1xxqA 161 3.61e+01 1z5lA 285 3.61e+01 1ttzA 87 3.64e+01 c.47.1.1 107309 1y88A 199 3.81e+01 2dg5B 190 3.82e+01 1odzA 386 3.86e+01 c.1.8.3 86889 1skoA 143 3.91e+01 d.110.7.1 105676 1ryaA 160 3.93e+01 d.113.1.5 105122 2cr5A 109 3.98e+01 1cv8 174 4.03e+01 1cv8 d.3.1.1 37089 1f00I 282 4.07e+01 1f00I b.1.14.1,b.1.14.1,d.169.1.3 22368,22369,42439 1p57A 114 4.09e+01 d.170.1.2 94125 1nrlA 316 4.11e+01 a.123.1.1 92091 1wrvA 308 4.25e+01 1vbvA 105 4.29e+01 2bkqA 212 4.37e+01 1iscA 192 4.37e+01 1avmA a.2.11.1,d.44.1.1 15733,38726 1p6oA 161 4.42e+01 c.97.1.2 94185 1z0wA 207 4.52e+01 1qjpA 171 4.56e+01 1bxwA f.4.1.1 43742 1mqeA 207 4.58e+01 d.113.1.1 91394 1htrB 329 4.59e+01 1smrA 1w9hA 427 4.60e+01 1w41A 101 4.67e+01 1vkiA 181 4.73e+01 d.116.1.1 108664 1v30A 124 4.76e+01 1ckaA 57 4.76e+01 1ckaA b.34.2.1 24459 1tljA 213 4.78e+01 d.282.1.1 107126 2cl1A 279 4.82e+01 1msc 129 4.85e+01 1msc d.85.1.1 40039 1zyeA 220 4.91e+01 1h7mA 102 4.96e+01 d.79.3.1 83485 1bywA 110 4.99e+01 1bywA d.110.3.6 40912 1xt9A 212 5.05e+01 1qg7A 67 5.08e+01 1a15A d.9.1.1 37449 1ry9A 145 5.16e+01 d.198.1.1 98094 1y9wA 140 5.27e+01 1uu1A 335 5.33e+01 c.67.1.1 99993 1b9wA 89 5.35e+01 1b9wA g.3.11.4,g.3.11.4 44334,44335 2c6cA 707 5.41e+01 2cw8A 537 5.49e+01 1d0iA 156 5.55e+01 2dhqA c.23.13.1 31383 1ttwA 138 5.67e+01 d.198.1.1 107308 1yqtA 538 5.71e+01 2bf6A 449 5.75e+01 2cfuA 658 5.77e+01 2fafA 608 5.90e+01 1gsa 316 6.07e+01 1gsa c.30.1.3,d.142.1.1 31718,41477 1ccwB 483 6.18e+01 1cb7B c.1.19.2 29646 1icxA 155 6.26e+01 d.129.3.1 71191 1y8cA 246 6.28e+01 1cuk 203 6.34e+01 1hjp a.5.1.1,a.60.2.1,b.40.4.2 16273,17946,25265 1zfpE 98 6.34e+01 1griA d.93.1.1 40465 1qe3A 489 6.42e+01 2bce c.69.1.1 34630 1jtkA 136 6.49e+01 c.97.1.1 71862 1vcdA 126 6.51e+01 1sqeA 109 6.51e+01 d.58.4.5 105908 2cu3A 64 6.53e+01 1xqaA 113 6.55e+01 1jidA 128 6.77e+01 d.201.1.1 66735 1j9yA 385 6.92e+01 1j9yA c.1.8.3 62791 2fnjA 226 6.94e+01 2crvA 120 6.96e+01 1gmuA 143 7.14e+01 b.107.1.1,d.58.38.1 65335,65336 1pda 315 7.17e+01 1pda c.94.1.1,d.50.2.1 35751,38794 1voqa 90 7.19e+01 1gpeA 587 7.21e+01 1gpeA c.3.1.2,d.16.1.1 30387,37951 2b59B 172 7.25e+01 2db9A 149 7.33e+01 1obr 326 7.33e+01 1aye c.56.5.2 33828 1jzuA 157 7.43e+01 b.60.1.1 84271 2bzoB 79 7.43e+01 1y8qB 640 7.51e+01 1l6rA 227 7.51e+01 c.108.1.10 77768 1ztcA 221 7.51e+01 1te7A 103 7.66e+01 1tzaA 134 7.66e+01 b.1.23.1 107468 1e19A 314 7.74e+01 1b7bA c.73.1.1 34967 1kb0A 677 7.75e+01 a.3.1.6,b.70.1.1 68378,68379 1uwzA 136 7.76e+01 c.97.1.1 108081 1a8h 500 7.77e+01 1a8h a.27.1.1,c.26.1.1 16922,31589 1qhdA 398 7.80e+01 1qhdA a.115.1.2,b.19.1.1 63324,63325 1mdwA 328 7.91e+01 d.3.1.3 84934 2ghrA 302 7.91e+01 1de4C 640 7.93e+01 1cx8B a.48.2.1,c.8.4.1,c.56.5.5 17779,30760,33848 1vggA 161 7.95e+01 1r77A 103 7.95e+01 1b8aA 438 8.01e+01 1b8aA b.40.4.1,d.104.1.1 25244,40765 1ifqA 138 8.07e+01 1ifqA d.110.4.1 62350 2dchX 216 8.07e+01 2ap1A 327 8.12e+01 2fv7A 331 8.25e+01 1itbB 315 8.28e+01 1itbB b.1.1.4,b.1.1.4,b.1.1.4 21720,21721,21722 1yb3A 175 8.29e+01 1a4yB 123 8.29e+01 7rsa d.5.1.1 37296 1pvmA 184 8.33e+01 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 1wba 175 8.39e+01 1wba b.42.4.1 25591 1zo2A 129 8.40e+01 1wgoA 123 8.53e+01 1n13B 113 8.65e+01 1jtdB 273 8.69e+01 b.69.5.2 67265 1n3gA 113 8.74e+01 d.204.1.1 79962 1hn2A 159 8.78e+01 b.60.1.1 65890 1gt1A 159 8.78e+01 b.60.1.1 90515 2cvjA 180 8.82e+01 1bco 327 8.88e+01 1bco b.48.1.1,c.55.3.3 26431,33676 1jfmA 174 8.90e+01 d.19.1.1 66640 1obpA 159 8.91e+01 1obpA b.60.1.1 27092