# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2f4qA 346 2.36e-01 1ffyA 917 3.39e-01 1qu2A a.27.1.1,b.51.1.1,c.26.1.1 16926,26891,31593 2c3vA 102 7.37e-01 1rgeA 96 9.63e-01 1rgeA d.1.1.2 36028 1lniA 96 1.22e+00 d.1.1.2 74046 1yksA 440 3.29e+00 1tp6A 128 3.72e+00 d.17.4.12 107184 1m7xA 617 3.99e+00 b.1.18.2,b.71.1.1,c.1.8.1 78749,78750,78751 1qx4A 274 4.74e+00 b.43.4.2,c.25.1.1 104624,104625 1tkeA 224 4.88e+00 1ui0A 205 5.27e+00 c.18.1.2 99411 1lktA 104 5.51e+00 1lktA b.90.1.1 28398 1qqyA 130 5.96e+00 3lzt d.2.1.2 36586 1ttzA 87 6.09e+00 c.47.1.1 107309 1yaxA 153 6.12e+00 1o9yA 84 6.15e+00 b.139.1.1 92692 2fafA 608 7.51e+00 1iscA 192 7.79e+00 1avmA a.2.11.1,d.44.1.1 15733,38726 1tqzA 133 7.79e+00 1lwdA 413 9.11e+00 c.77.1.1 78265 1o8uA 257 1.16e+01 c.14.1.3 81194 1lz1 130 1.17e+01 3lzt d.2.1.2 36415 1szoA 257 1.21e+01 c.14.1.3 106164 1jsf 130 1.21e+01 3lzt d.2.1.2 36410 1mgrA 99 1.22e+01 d.1.1.2 79106 1izoA 417 1.25e+01 a.104.1.1 83851 1cqyA 99 1.30e+01 1b9zA b.3.1.1 22527 1g5aA 628 1.37e+01 b.71.1.1,c.1.8.1 65152,65153 1zcxA 178 1.41e+01 3ezmA 101 1.48e+01 3ezmA b.89.1.1 28395 1gv3A 248 1.56e+01 a.2.11.1,d.44.1.1 70585,70586 1vr8A 142 1.61e+01 1hb6A 86 1.71e+01 a.11.1.1 70959 1m0uA 249 1.71e+01 a.45.1.1,c.47.1.5 78359,78360 1vfrA 218 1.87e+01 1vfrA d.90.1.1 40247 1rpyA 114 1.94e+01 d.93.1.1 97718 1un3A 123 2.14e+01 d.5.1.1 99646 1wgoA 123 2.47e+01 1qhoA 686 2.48e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21844,22513,27751,28738 1jogA 146 2.57e+01 a.24.16.2 77142 1omrA 201 2.61e+01 a.39.1.5 93349 1lrwA 600 2.93e+01 b.70.1.1 91111 1rec 201 2.97e+01 1rec a.39.1.5 17326 1uvqA 197 2.97e+01 b.1.1.2,d.19.1.1 100062,100063 1hn2A 159 3.13e+01 b.60.1.1 65890 1ugjA 141 3.16e+01 b.41.1.3 107826 1xfsA 178 3.18e+01 d.129.3.5 109589 1wd2A 60 3.28e+01 g.44.1.1 109232 1zkdA 387 3.38e+01 1a4yB 123 3.40e+01 7rsa d.5.1.1 37296 1vbvA 105 3.41e+01 1u07A 90 3.43e+01 1vq3A 94 3.44e+01 1y8qB 640 3.46e+01 1iakA 199 3.46e+01 1iakA b.1.1.2,d.19.1.1 21625,38199 1m9sA 605 3.55e+01 b.1.18.15,b.34.11.1,b.34.11.1,b.34.11.1,c.10.2.1 78874,78875,78876,78877,78878 1dcjA 81 3.55e+01 1dcjA d.68.3.3 59115 1v30A 124 3.56e+01 1gt1A 159 3.61e+01 b.60.1.1 90515 1v4eA 299 3.70e+01 a.128.1.1 100296 1obpA 159 3.73e+01 1obpA b.60.1.1 27092 1ur1A 378 3.75e+01 c.1.8.3 99804 1i7pA 274 3.78e+01 b.43.4.2,c.25.1.1 66048,66049 1qg7A 67 3.80e+01 1a15A d.9.1.1 37449 1dvoA 152 3.83e+01 1dvoA a.136.1.1 19623 1h6hA 143 3.87e+01 d.189.1.1 65681 2a4hA 126 3.95e+01 1hxrA 115 3.98e+01 1fwqA b.88.1.1 28392 1dk8A 147 4.05e+01 1agrE a.91.1.1 18548 1i3dA 146 4.08e+01 a.1.1.2 61587 1x3sA 195 4.22e+01 1zosA 230 4.27e+01 1hw7A 255 4.31e+01 1i7fA d.193.1.1 61297 1cjbA 231 4.32e+01 1qk3A c.61.1.1 34079 1t3nA 388 4.32e+01 d.240.1.1,e.8.1.7 106363,106364 2fa8A 105 4.41e+01 1rwsA 77 4.57e+01 d.15.3.2 97991 1zbfA 142 4.59e+01 1khbA 625 4.61e+01 c.91.1.1,c.109.1.1 68606,68607 2bdeA 470 4.72e+01 1b24A 188 4.74e+01 1b24A d.95.2.1,d.95.2.1 40573,40574 1fnd 314 4.76e+01 1fnc b.43.4.2,c.25.1.1 25626,31516 2cfuA 658 4.89e+01 1w4xA 542 4.94e+01 c.3.1.5,c.3.1.5 109171,109172 1vns 609 4.95e+01 1vns a.111.1.3 19061 2apoB 60 5.02e+01 1zr6A 503 5.10e+01 1n82A 331 5.15e+01 c.1.8.3 91703 1fnc 314 5.29e+01 1fnc b.43.4.2,c.25.1.1 25627,31517 2ciaA 102 5.31e+01 1miwA 404 5.55e+01 a.173.1.1,d.218.1.4 79162,79163 1bquA 215 5.63e+01 1bquA b.1.2.1,b.1.2.1 22066,22067 1zetA 388 5.69e+01 1g8kA 825 5.69e+01 1g8jA b.52.2.2,c.81.1.1 26920,35328 1bt3A 345 5.70e+01 1bt3A a.86.1.2 18507 1xewY 172 5.89e+01 2alzA 390 5.91e+01 2gw6A 123 5.92e+01 1bx1A 314 6.08e+01 1fnc b.43.4.2,c.25.1.1 25629,31519 2bjbA 462 6.14e+01 2b59B 172 6.16e+01 1ddmA 135 6.25e+01 2nmbA b.55.1.2 26993 2aq6A 147 6.40e+01 1m93C 41 6.44e+01 1y88A 199 6.71e+01 1mhnA 59 6.76e+01 b.34.9.1 84964 1pylA 97 6.77e+01 d.1.1.2 104391 1u0tA 307 6.98e+01 e.52.1.1 107567 2dpiA 420 7.03e+01 1j71A 334 7.05e+01 1eagA b.50.1.2 62669 1vq2A 193 7.11e+01 1xxoA 147 7.12e+01 1rxqA 178 7.19e+01 a.213.1.1 105118 1pvmA 184 7.20e+01 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 1rw2A 152 7.20e+01 a.118.19.1 97961 1z5sD 83 7.27e+01 1cdq 77 7.29e+01 1cds g.7.1.3 44459 2c7xA 436 7.35e+01 1ztcA 221 7.37e+01 1t5yA 190 7.39e+01 b.122.1.1,d.17.6.3 106495,106496 1pk6B 132 7.40e+01 b.22.1.1 94802 1ndh 272 7.45e+01 1ndh b.43.4.2,c.25.1.1 25662,31552 1txkA 498 7.51e+01 b.1.18.2,b.30.5.9 107425,107426 1d4oA 184 7.53e+01 1d4oA c.31.1.4 31748 1xkiA 162 7.78e+01 2d1uA 104 7.86e+01 1yx1A 264 7.93e+01 1jb7B 260 7.94e+01 1otcB b.40.4.3 62839 1zy9A 564 7.98e+01 1w9aA 147 7.99e+01 2fbmA 291 8.10e+01 1ne8A 117 8.22e+01 b.34.6.2 80424 1o5xA 248 8.27e+01 c.1.1.1 92528 1nvpB 57 8.30e+01 a.32.1.1 92211 1bkrA 109 8.32e+01 1bkrA a.40.1.1 17394 1dekA 241 8.55e+01 1dekA c.37.1.1 31842 1o7fA 469 8.56e+01 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 1twfK 120 8.56e+01 1m0wA 491 8.75e+01 c.30.1.4,d.142.1.6 78363,78364 1v0jA 399 8.81e+01 1lmeA 176 8.81e+01 d.167.1.1 84629 1ve2A 235 8.83e+01 1mmvB 419 8.84e+01 d.174.1.1 91318 2cw8A 537 8.85e+01 1j9bA 141 8.86e+01 c.47.1.12 66459 1i50K 120 8.92e+01 d.74.3.2 61765