# List of top-scoring protein chains for T0357.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2etlA 228 4.17e+00 2f1dA 207 4.46e+00 2g74A 183 6.99e+00 1x83A 189 7.07e+00 1giqA 413 7.29e+00 d.166.1.1,d.166.1.1 76224,76225 1i9aA 182 7.62e+00 1i9aA d.113.1.2 62082 1ppvA 183 7.63e+00 d.113.1.2 104282 1x84A 189 7.72e+00 1hztA 190 7.77e+00 1i9aA d.113.1.2 61459 1q54A 183 8.22e+00 d.113.1.2 95860 1hx3A 190 8.38e+00 1i9aA d.113.1.2 61351 1neu 124 1.10e+01 1neu b.1.1.1 19704 1r67A 190 1.13e+01 d.113.1.2 97147 2bukA 196 1.23e+01 1qdlB 195 1.26e+01 1qdlB c.23.16.1 31437 2aa4A 289 1.32e+01 1dkuA 317 1.35e+01 1dkuA c.61.1.2,c.61.1.2 34118,34119 1sxjB 323 1.64e+01 a.80.1.1,c.37.1.20 106083,106084 1wviA 257 1.66e+01 1ojjA 402 2.12e+01 b.29.1.10 93130 1f1eA 154 2.28e+01 a.22.1.2 64927 1cjcA 460 2.34e+01 1cjcA c.3.1.1,c.4.1.1 30319,30604 1zunB 434 2.34e+01 1vi4A 174 2.38e+01 c.8.7.1 100731 1bxoA 323 3.42e+01 2er7E b.50.1.2 26805 1v7lA 163 3.50e+01 1c9mA 269 3.64e+01 1gci c.41.1.1 32506 1jm1A 204 3.64e+01 b.33.1.1 71745 1q5pA 269 3.64e+01 c.41.1.1 95903 1zxoA 291 4.02e+01 1nxuA 333 4.33e+01 c.122.1.1 86389 2fsjA 346 4.34e+01 1s20A 340 4.38e+01 c.122.1.1 98356 1v4xA 144 4.43e+01 a.1.1.2 108363 1st3 269 4.55e+01 1gci c.41.1.1 32504 1jhcA 137 4.90e+01 b.87.1.1 63054 1a81A 254 4.97e+01 1a81A d.93.1.1,d.93.1.1 40507,40508 1nm1A 375 5.19e+01 c.55.1.1,c.55.1.1 80651,80652 2cpxA 115 5.21e+01 1y9wA 140 5.23e+01 1egjH 220 5.23e+01 1igtB b.1.1.1,b.1.1.2 20501,21457 1jhhA 202 5.86e+01 a.4.5.2,b.87.1.1 63060,63061 1dymA 402 5.88e+01 1celA b.29.1.10 24304 1q5xA 161 5.94e+01 c.8.7.1 95947 1uwgH 225 6.01e+01 b.1.1.1,b.1.1.2 100115,100116 2evaA 307 6.05e+01 1ofdA 1520 6.15e+01 b.80.4.1,c.1.4.1,d.153.1.1 86935,86936,86937 1j0aA 325 6.19e+01 c.79.1.1 83871 1gp1A 198 6.24e+01 1gp1A c.47.1.10 33059 2bujA 317 6.28e+01 1tr9A 341 6.34e+01 1y65A 342 6.37e+01 1qdmA 478 6.51e+01 1smrA a.64.1.2,b.50.1.2 18141,26838 1outA 143 7.00e+01 1abwA a.1.1.2 15400 1cg1A 431 7.14e+01 1adeA c.37.1.10 32223 1cg3A 431 7.21e+01 1adeA c.37.1.10 32219 1qf5A 431 7.22e+01 1adeA c.37.1.10 32212 1d4xA 375 7.24e+01 1yagA c.55.1.1,c.55.1.1 59107,59108 1cg4A 431 7.25e+01 1adeA c.37.1.10 32228 1kkbA 432 7.25e+01 c.37.1.10 72643 1gci 269 7.62e+01 1gci c.41.1.1 32503 3tmkA 216 7.69e+01 3tmkA c.37.1.1 31920 1wsdA 269 7.69e+01 1t9hA 307 7.90e+01 2gdm 153 7.97e+01 2gdm a.1.1.2 15212 1dvfD 120 8.07e+01 1mfa b.1.1.1 20107 1wyuB 474 8.28e+01 1oroA 213 8.32e+01 1opr c.61.1.1 34093 1yrrA 382 8.55e+01 1q1jL 215 8.65e+01 b.1.1.1,b.1.1.2 95585,95586 1c0fA 368 8.69e+01 1yagA c.55.1.1,c.55.1.1 33447,33448 1yshE 84 8.77e+01 1lyqA 104 8.81e+01 b.1.18.17 78302 1wzdA 215 8.93e+01