# List of top-scoring protein chains for t2k-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1v7lA 163 3.15e-01 1qdlB 195 1.36e+00 1qdlB c.23.16.1 31437 1qmeA 702 2.56e+00 1pmd d.11.1.1,d.11.1.1,d.175.1.1,e.3.1.1 37487,37488,42560,42769 1v3fA 120 3.54e+00 a.4.5.31 100289 1rxyA 253 4.07e+00 c.56.2.1 98065 1lx7A 253 4.08e+00 c.56.2.1 74329 1vbkA 307 4.37e+00 1tg6A 277 7.40e+00 1k3fA 253 7.94e+00 c.56.2.1 68105 1d2gA 292 9.19e+00 1xvaA c.66.1.5 34187 1bhjA 292 1.06e+01 1xvaA c.66.1.5 34189 1pmd 675 1.13e+01 1pmd d.11.1.1,d.11.1.1,d.175.1.1,e.3.1.1 37491,37492,42562,42771 1xvaA 292 1.28e+01 1xvaA c.66.1.5 34183 1a4sA 503 1.31e+01 1bpwA c.82.1.1 35361 1q0rA 298 1.37e+01 c.69.1.28 95508 3tmkA 216 1.46e+01 3tmkA c.37.1.1 31920 2evaA 307 1.54e+01 2tmkA 216 1.54e+01 3tmkA c.37.1.1 31928 1o04A 500 1.67e+01 c.82.1.1 86508 1efaA 333 1.69e+01 1tlfA a.35.1.5,c.93.1.1 17106,35691 1cs1A 386 1.71e+01 1ibjA c.67.1.3 34399 1tlfA 301 1.75e+01 1tlfA c.93.1.1 35687 1cs1C 386 1.82e+01 1ibjA c.67.1.3 34401 1h6zA 913 1.85e+01 c.1.12.2,c.8.1.1,d.142.1.5 70906,70907,70908 1m22A 503 1.86e+01 c.117.1.1 78464 1vhsA 175 1.98e+01 d.108.1.1 100698 1zbmA 280 2.01e+01 2ganA 190 2.11e+01 1mrzA 293 2.12e+01 b.43.5.1,c.26.1.3 91452,91453 1kzhA 555 2.13e+01 c.89.1.1 73361 1ab3 88 2.14e+01 1a32 a.16.1.2 16395 1pysB 785 2.19e+01 1pysB a.6.1.1,a.6.1.1,b.40.4.4,d.58.13.1,d.104.1.1,d.138.1.1 16299,16300,25311,39310,40779,41455 1eiyB 785 2.23e+01 1pysB a.6.1.1,a.6.1.1,b.40.4.4,d.58.13.1,d.104.1.1,d.138.1.1 16305,16306,25314,39313,40782,41458 1vi4A 174 2.26e+01 c.8.7.1 100731 1fjhA 257 2.37e+01 1fjhB c.2.1.2 29870 1cjcA 460 2.39e+01 1cjcA c.3.1.1,c.4.1.1 30319,30604 1lrwA 600 2.39e+01 b.70.1.1 91111 1bpwA 503 2.47e+01 1bpwA c.82.1.1 35365 1uxtA 501 2.49e+01 c.82.1.1 108125 1ag8A 499 2.51e+01 1bpwA c.82.1.1 35341 1jyeA 349 2.53e+01 c.93.1.1 67455 1z85A 234 2.61e+01 1mrp 309 2.62e+01 1mrp c.94.1.1 35796 1d2pA 373 2.69e+01 1d2oA b.3.5.1,b.3.5.1,b.3.5.1,b.3.5.1 22629,22630,22631,22632 1fjhB 257 2.71e+01 1fjhB c.2.1.2 29871 2coeA 120 2.72e+01 1b7yB 785 2.73e+01 1pysB a.6.1.1,a.6.1.1,b.40.4.4,d.58.13.1,d.104.1.1,d.138.1.1 16301,16302,25312,39311,40780,41456 2aa4A 289 2.82e+01 2c46A 241 2.83e+01 1j8mF 297 2.86e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 1nnfA 309 2.89e+01 c.94.1.1 85903 1mx3A 347 2.91e+01 c.2.1.4,c.23.12.1 79638,79639 1nbwB 117 2.93e+01 c.51.3.2 80396 1z5vA 474 2.93e+01 1c3gA 170 3.08e+01 1c3gA b.4.1.1,b.4.1.1 22831,22832 1fc6A 388 3.09e+01 1fc6A b.36.1.3,c.14.1.2 64738,64739 1zemA 262 3.21e+01 1fnsA 196 3.22e+01 1auq c.62.1.1 34136 1l3yA 41 3.24e+01 g.3.11.6 73558 1r0wA 286 3.32e+01 c.37.1.12 96754 1jbkA 195 3.38e+01 c.37.1.20 71631 1uarA 285 3.40e+01 c.46.1.2,c.46.1.2 107762,107763 1oakA 196 3.50e+01 1auq c.62.1.1 34138 1m1nB 522 3.56e+01 c.92.2.3 78418 1gheA 177 3.61e+01 d.108.1.1 76222 1z1dA 103 3.66e+01 1q40B 219 3.68e+01 d.17.4.2 95771 1ijbA 202 3.69e+01 c.62.1.1 71229 1x84A 189 3.71e+01 2g76A 335 3.77e+01 1auq 208 3.77e+01 1auq c.62.1.1 34137 1neu 124 3.79e+01 1neu b.1.1.1 19704 2minB 522 3.91e+01 1qguB c.92.2.3 35610 3minB 522 3.97e+01 1qguB c.92.2.3 35606 1g3kA 174 4.05e+01 1nedA d.153.1.4 41989 1dvfD 120 4.13e+01 1mfa b.1.1.1 20107 2stv 195 4.14e+01 2stv b.121.7.1 23287 2bukA 196 4.15e+01 1ik6A 369 4.16e+01 c.36.1.7,c.48.1.2 66174,66175 1mit 69 4.17e+01 1hymA d.40.1.1 38582 1i9aA 182 4.24e+01 1i9aA d.113.1.2 62082 1rl6A 177 4.25e+01 1rl6A d.141.1.1,d.141.1.1 41473,41474 2fhi 147 4.30e+01 1fit d.13.1.1 37505 1dpuA 99 4.35e+01 1dpuA a.4.5.16 16150 1gcoA 261 4.39e+01 1ybvA c.2.1.2 29884 1w15A 153 4.42e+01 b.7.1.2 109041 1geeA 261 4.44e+01 c.2.1.2 90509 1gz6A 319 4.73e+01 c.2.1.2 76410 1aquA 297 4.89e+01 1aquA c.37.1.5 31942 1tin 69 4.94e+01 2sniI d.40.1.1 38580 1hztA 190 4.97e+01 1i9aA d.113.1.2 61459 1nbwA 607 5.12e+01 c.8.6.1,c.55.1.6,c.55.1.6 80393,80394,80395 1dleA 298 5.14e+01 1dleA b.47.1.2 26312 1uf2A 1019 5.15e+01 e.28.1.2 99289 1xcbA 211 5.21e+01 a.4.5.38,c.2.1.12 109552,109553 1ag4 103 5.30e+01 1ag4 b.11.1.1 23629 2beiA 170 5.32e+01 1cjbA 231 5.34e+01 1qk3A c.61.1.1 34079 1pdkB 157 5.52e+01 1pdkB b.2.3.2 22427 1a04A 215 5.60e+01 1a04A a.4.6.2,c.23.1.1 16234,31089 2atrA 138 5.62e+01 1g3qA 237 5.68e+01 1hyqA c.37.1.10 60237 1hf2A 210 5.71e+01 1hf2A b.80.3.1,c.102.1.1 60992,60993 1i1hA 219 5.85e+01 1f2vA c.23.17.1 61530 1rfa 79 5.92e+01 1c1yB d.15.1.5 37620 1i9sA 210 5.93e+01 1i9sA c.45.1.1 62099 1k3bB 164 5.95e+01 d.3.1.1 72015 1wviA 257 6.11e+01 1q1gA 276 6.13e+01 c.56.2.1 95574 1rypL 212 6.14e+01 d.153.1.4 41880 1g65K 211 6.15e+01 d.153.1.4 41907 1vddA 228 6.15e+01 e.49.1.1 108519 1g57A 217 6.21e+01 1g57A d.115.1.2 60253 1rliA 184 6.22e+01 c.23.5.6 97647 2fr1A 486 6.26e+01 1gp1A 198 6.37e+01 1gp1A c.47.1.10 33059 2d1yA 256 6.55e+01 1bg6 359 6.55e+01 1bg6 a.100.1.5,c.2.1.6 18810,30214 1nznA 126 6.58e+01 a.118.8.1 92382 1npdA 288 6.60e+01 c.2.1.7,c.58.1.5 80681,80682 1gnwA 211 6.65e+01 1gnwA a.45.1.1,c.47.1.5 17727,33021 1ja9A 274 6.75e+01 c.2.1.2 62817 1iygA 133 6.89e+01 a.118.8.1 76947 1ockA 412 6.92e+01 c.117.1.1 86802 1v95A 130 6.97e+01 c.51.1.1 108435 1sheA 103 7.02e+01 d.274.1.1 105551 1qo7A 394 7.07e+01 1qo7A c.69.1.11 34697 1ldnA 316 7.07e+01 1hyhA c.2.1.5,d.162.1.1 30166,42133 1d2oA 187 7.11e+01 1d2oA b.3.5.1,b.3.5.1 22625,22626 1gggA 226 7.31e+01 1lst c.94.1.1 35817 1jc4A 148 7.38e+01 1jc4A d.32.1.4 62863 1rznA 205 7.39e+01 2a9kA 187 7.40e+01 1or7C 90 7.49e+01 a.180.1.1 87336 1lfwA 470 7.53e+01 c.56.5.4,d.58.19.1 77942,77943 1qi6A 475 7.72e+01 1euhA c.82.1.1 35373 1tksA 204 7.79e+01 d.115.1.2 107114 1ooeA 236 7.81e+01 c.2.1.2 87196 1nedA 183 7.86e+01 1nedA d.153.1.4 41974 1uhwA 109 8.02e+01 a.4.5.31 99410 1d4fA 431 8.02e+01 1b3rA c.2.1.4,c.23.12.3 30110,31370 1so7A 382 8.08e+01 1zk4A 251 8.09e+01 1nxqA 251 8.09e+01 c.2.1.2 86388 2gn4A 344 8.21e+01 1ej6D 418 8.23e+01 i.7.1.1 45970 2gujA 155 8.34e+01 1g8lA 411 8.49e+01 1g8lA b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 1owxA 121 8.51e+01 d.58.7.1 87494 1ri5A 298 8.57e+01 c.66.1.34 97502 1zymA 258 8.97e+01 1zymA a.60.10.1,c.8.1.2 18110,30705